Evaluation of the fully automated Bactec MGIT 960 system for the susceptibility testing of Mycobacterium tuberculosis to first-line drugs: a multicenter study

The accuracy of the Bactec MGIT 960 system for susceptibility testing of 177 clinical isolates of Mycobacterium tuberculosis to first line drugs (isoniazid, rifampicin, ethambutol and streptomycin) was compared with the agar reference method. The sensitivity, the ability to detect resistance, of the MGIT system was 100%, while the specificity, the ability to detect susceptibility, ranged from 98.6% to 100% for all drugs tested.     

IAA production during germination of Orobanche spp. seeds

Broomrapes (Orobanche spp.) are parasitic plants, whose growth and development fully depend on the nutritional connection established between the parasite and the roots of the respective host plant. Phytohormones are known to play a role in establishing the specific Orobanche-host plant interaction. The first step in the interaction is seed germination triggered by a germination stimulant secreted by the host-plant roots. We quantified indole-3-acetic acid (IAA) and abscisic acid (ABA) during the seed germination of tobacco broomrape (Orobanche ramosa) and sunflower broomrape (O. cumana). IAA was mainly released from Orobanche seeds in host-parasite interactions as compared to non-host-parasite interactions. Moreover, germinating seeds of O. ramosa released IAA as early as 24 h after the seeds were exposed to the germination stimulant, even before development of the germ tube. ABA levels remained unchanged during the germination of the parasites' seeds. The results presented here show that IAA production is probably part of a mechanism triggering germination upon the induction by the host factor, thus resulting in seed germination.     

Detection of new Francisella-like tick endosymbionts in Hyalomma spp. and Rhipicephalus spp. (Acari: Ixodidae) from Bulgaria

We report on the identification of two new Francisella-like endosymbionts (FLEs) found in three different tick species from Bulgaria. The FLEs were characterized by 16S rRNA and tul4 gene sequencing and seem to lack the molecular marker RD1. These two new taxa seem to be facultative secondary endosymbionts of ticks.     

The three-dimensional solution structure of Ca(2+)-bound S100A1 as determined by NMR spectroscopy

S100A1 is an EF-hand-containing Ca(2+)-binding protein that undergoes a conformational change upon binding calcium as is necessary to interact with protein targets and initiate a biological response. To better understand how calcium influences the structure and function of S100A1, the three-dimensional structure of calcium-bound S100A1 was determined by multidimensional NMR spectroscopy and compared to the previously determined structure of apo. In total, 3354 nuclear Overhauser effect-derived distance constraints, 240 dihedral constraints, 160 hydrogen bond constraints, and 362 residual dipolar coupling restraints derived from a series of two-dimensional, three-dimensional, and four-dimensional NMR experiments were used in its structure determination (>21 constraints per residue). As with other dimeric S100 proteins, S100A1 is a symmetric homodimer with helices 1, 1', 4, and 4' associating into an X-type four-helix bundle at the dimer interface. Within each subunit there are four alpha-helices and a short antiparallel beta-sheet typical of two helix-loop-helix EF-hand calcium-binding domains. The addition of calcium did not change the interhelical angle of helices 1 and 2 in the pseudo EF-hand significantly; however, there was a large reorientation of helix 3 in the typical EF-hand. The large conformational change exposes a hydrophobic cleft, defined by residues in the hinge region, the C terminus, and regions of helix 3, which are important for the interaction between S100A1 and a peptide (TRTK-12) derived from the actin-capping protein CapZ.     

Measurement of long-range2 13C-1H coupling constants of 95% uniformly 13C-labeled polysaccharide from streptococcus mitis J22

The coaggregation of Streptococcus mitis strain J22 in the early stages of dental plaque formation has been shown to result from interaction of cell wall polysaccharides with lectins on the surface of other oral bacterial species. This bacterium was grown in a medium containing ¹³C as the sole carbon source. We have isolated the lectin receptor polysaccharide from this strain with full enrichment in ¹³C and have determined a number of two-bond and three-bond ¹³C-¹H coupling constants from measurements of the offsets in two-dimensional homonuclear nmr spectra [exclusive correlated spectroscopy (E-COSY) method]. A scheme for reliable extraction of these coupling constants from homonuclear Hartmann-Hahn and nuclear Overhauser effect spectroscopy spectra is tested in model compounds. We interpret the three-bond coupling across the glycosidic linkage in terms of dihedral angles in order to provide conformational information to supplement molecular modeling and nuclear Overhauser effect data. We show that the E-COSY method works well even for coupling constants smaller than the nmr line width and that a number of the ³J_CH across the glycosidic linkage are in the range of 1–2 Hz, which is much smaller than many previously reported values. © 1994 John Wiley & Sons, Inc.     

Unveiling Gymnosporangium corniforme, G. unicorne, and G. niitakayamense sp. nov. in Taiwan

Three rust fungi from high mountains and pear-producing areas in Taiwan were described using morphological and molecular data based on 34 specimens. Gymnosporangium corniforme was demonstrated to produce spermogonia and aecia on Sorbus randaiensis based on molecular analyses and inoculation experiments. The pear rust pathogen G. unicorne was discovered in Taiwan for the first time. Gymnosporangium niitakayamense sp. nov. was observed on the leaves of Photinia niitakayamensis. It was distinct from other species in peridial cell wall structures, i.e., smooth outer wall, rugose side wall, and coralloid projections on the inner wall, and in having echinulate aeciospores.     

Piperonylic Acid, a Selective, Mechanism-Based Inactivator of the trans-Cinnamate 4-Hydroxylase: A New Tool to Control the Flux of Metabolites in the Phenylpropanoid Pathway

Piperonylic acid (PA) is a natural molecule bearing a methylenedioxy function that closely mimics the structure of trans-cinnamic acid. The CYP73A subfamily of plant P450s catalyzes trans-cinnamic acid 4-hydroxylation, the second step of the general phenylpropanoid pathway. We show that when incubated in vitro with yeast-expressed CYP73A1, PA behaves as a potent mechanism-based and quasi-irreversible inactivator of trans-cinnamate 4-hydroxylase. Inactivation requires NADPH, is time dependent and saturable (K_I = 17 μm, k_inact = 0.064 min⁻¹), and results from the formation of a stable metabolite-P450 complex absorbing at 427 nm. The formation of this complex is reversible with substrate or other strong ligands of the enzyme. In plant microsomes PA seems to selectively inactivate the CYP73A P450 subpopulation. It does not form detectable complexes with other recombinant plant P450 enzymes. In vivo PA induces a sharp decrease in 4-coumaric acid concomitant to cinnamic acid accumulation in an elicited tobacco (Nicotiana tabacum) cell suspension. It also strongly decreases the formation of scopoletin in tobacco leaves infected with tobacco mosaic virus.The phenylpropanoid metabolism is a plant-specific pathway leading to compounds of extremely diverse structure and function (Dixon and Paiva, 1995; Werck-Reichhart, 1995). It is involved in the formation of quantitatively major biopolymers such as lignin and suberin, but also in the biosynthesis of signaling molecules such as salicylic acid and isoflavonoids in flower pigments, UV protectants such as anthocyanins, flavonoids, and coumarins, and several classes of phytoalexins. The upstream part of the phenylpropanoid metabolism, which branches from the shikimate pathway at the level of l-Phe, consists of a core of three enzymatic steps leading to 4-coumaroyl CoA (Fig. ​(Fig.1).1). This set of three reactions, often called the general phenylpropanoid pathway, controls the flux of metabolites toward all families of compounds derived from the C6-C3 skeleton of Phe. Compounds with a C6-C1 structure are not strictly phenylpropanoids, but also derive from l-Phe. They originate from the core pathway intermediates cinnamic acid or 4-coumaric acid (Yalpani et al., 1993). Molecules with a C6-C1 backbone include benzoic and salicylic acids and economically important compounds such as vanillin. Figure 1Branching and inhibitors of the phenylpropanoid pathway. AOPP, α-Amino-β-phenylpropionic acid; MDCA, methylenedioxycinnamic acid.The second step in the core phenylpropanoid pathway is the hydroxylation of trans-cinnamic acid to 4-coumaric acid. The reaction is catalyzed by C4H, a member of the superfamily of Cyt P450 heme-thiolate proteins. P450s are monooxygenases that catalyze the oxidation of a remarkably broad range of endogenous and exogenous chemicals in all organisms. In plants they play important roles in biosynthetic pathways, including those of sterols, isoprenoids, alkaloids, oxygenated fatty acids, and phenylpropanoids (Bolwell et al., 1994; Durst and O''Keefe, 1995; Schuler, 1996). They are also involved in the metabolism and sometimes in the activation of many herbicides, insecticides, and other xenobiotics. CYP73A1 is a C4H from Jerusalem artichoke (Helianthus tuberosus). Its coding sequence was isolated from tuber tissues (Teutsch et al., 1993) and expressed in yeast (Urban et al., 1994). The yeast-expressed enzyme is catalytically active and capable of hydroxylating cinnamic acid with a very high efficiency (k_cat ranging from 100 to 400 min⁻¹).The high activity of the recombinant enzyme led us to investigate its activity toward other potential substrates, natural plant components, and xenobiotics. Several exogenous molecules were thus found to be substrates of CYP73A1 (Pierrel et al., 1994; Schalk et al., 1997). The efficiency of the metabolism of the xenobiotic molecules largely relied on their structural analogy to the natural substrate. A systematic structure-activity study recently led to the characterization of some good alternative substrates and high-affinity inhibitors of the enzyme, and of the structural requirements for an efficient binding into the active site of CYP73A1 (Schalk et al., 1997). The ideal ligand of C4H was thus defined as a rigid hydrophobic backbone of the size of a bicyclic aromatic structure (e.g. naphthalene), bearing one or several small negatively charged substituent(s) centered around carbon 2 of the naphthalene ring, the prototype alternative substrate being 2-naphthoic acid (Fig. ​(Fig.2). 2). Figure 2Structural analogy between substrates of CYP73A1.PA is a natural molecule extracted from the bark of the Paracoto tree that roughly fulfills all of these requirements. PA contains a MDP function at a position suitable for oxidative attack by CYP73A1. Many compounds with MDP function have been shown to inhibit mammalian or insect P450 enzymes both in vitro and in vivo (Franklin, 1977; Wilkinson et al., 1984; Ortiz de Montellano and Correia, 1995). They were shown to act as mechanism-based inactivators and to require P450-catalyzed metabolism to generate a MI forming a stable complex with the enzyme (Franklin, 1971). Available data suggest that the MI is likely a carbene that binds as the sixth coordinant to the heme iron (Mansuy et al., 1979).We have tested PA inhibition of recombinant CYP73A1 and show that it behaves as a very potent, mechanism-based inhibitor of C4H. It is effective in vitro on the recombinant enzyme, being far more efficient than other MDP compounds. It is apparently selective for C4H. Assays performed in vivo on tobacco (Nicotiana tabacum) leaves and cell cultures indicate that it can be used to inactivate C4H and to block the input of precursors into the main C6-C3 pathway. To our knowledge, it is the first selective and quasi-irreversible inhibitor of the C4H so far described.     

The <Emphasis Type="Italic">Vitis vinifera</Emphasis> sugar transporter gene family: phylogenetic overview and macroarray expression profiling

Background  

In higher plants, sugars are not only nutrients but also important signal molecules. They are distributed through the plant via sugar transporters, which are involved not only in sugar long-distance transport via the loading and the unloading of the conducting complex, but also in sugar allocation into source and sink cells. The availability of the recently released grapevine genome sequence offers the opportunity to identify sucrose and monosaccharide transporter gene families in a woody species and to compare them with those of the herbaceous Arabidopsis thaliana using a phylogenetic analysis.     

Comparative studies of different cryopreservation methods for mesenchymal stem cells derived from human fetal liver

Fetal stem cells possess some intriguing characteristics, which delineate them as promising cellular therapeutics. They are less immunogenic, at lower stage of differentiation and have higher potential for repopulation and migration. Furthermore, the fetal stem cells secrete a set of cytokines and growth factors, which stimulate the regeneration of the recipient tissue. The present study indicated that the adhesive fraction of human fetal liver cells possessed the morphological characteristics of mesenchymal stem cells, as well as potential to differentiate into adipocyte and osteoblast lineages. The immunophenotypic analysis showed that the cells expressed CD13, CD73, CD90 and CD105 (typical for mesenchymal stem cells) and lacked the haematopoietic lineage markers CD34 and CD45. Addressing the issue of the low‐temperature storage of the human fetal liver cells, four different methods for cryopreservation were assessed: conventional slow freezing, program freezing and two vitrification protocols. The obtained results demonstrated that the cells were cryotolerant and maintained their properties and differentiation potential after thawing. Program freezing showed to be the most efficient method for cryopreservation of the investigated cells.     

Multicenter evaluation of the fully automated Bactec MGIT 960 system for susceptibility testing of Mycobacterium tuberculosis to pyrazinamide: comparison with the radiometric Bactec 460TB system

One hundred and fifty clinical isolates of Mycobacterium tuberculosis were tested for susceptibility to pyrazinamide using the fully automated Bactec MGIT 960 system and the radiometric Bactec 460TB system. The overall concordance rate between MGIT 960 and radiometric system was 100% and the mean turnaround times to report the susceptibility test results were almost identical (6.37 and 6.8 days, respectively).