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排序方式: 共有492条查询结果,搜索用时 31 毫秒
31.
Kathryn?D. Mouzakis Elizabeth?A. Dethoff Marco Tonelli Hashim Al-Hashimi Samuel?E. Butcher 《Biophysical journal》2015,108(3):644-654
The HIV-1 frameshift site (FS) plays a critical role in viral replication. During translation, the HIV-1 FS transitions from a 3-helix to a 2-helix junction RNA secondary structure. The 2-helix junction structure contains a GGA bulge, and purine-rich bulges are common motifs in RNA secondary structure. Here, we investigate the dynamics of the HIV-1 FS 2-helix junction RNA. Interhelical motions were studied under different ionic conditions using NMR order tensor analysis of residual dipolar couplings. In 150 mM potassium, the RNA adopts a 43°(±4°) interhelical bend angle (β) and displays large amplitude, anisotropic interhelical motions characterized by a 0.52(±0.04) internal generalized degree of order (GDOint) and distinct order tensor asymmetries for its two helices (η = 0.26(±0.04) and 0.5(±0.1)). These motions are effectively quenched by addition of 2 mM magnesium (GDOint = 0.87(±0.06)), which promotes a near-coaxial conformation (β = 15°(±6°)) of the two helices. Base stacking in the bulge was investigated using the fluorescent purine analog 2-aminopurine. These results indicate that magnesium stabilizes extrahelical conformations of the bulge nucleotides, thereby promoting coaxial stacking of helices. These results are highly similar to previous studies of the HIV transactivation response RNA, despite a complete lack of sequence similarity between the two RNAs. Thus, the conformational space of these RNAs is largely determined by the topology of their interhelical junctions. 相似文献
32.
Raba’atun Adawiyah S. Shuhaimi M. Mohd Yazid A. M. Abdul Manaf A. Rosli N. Sreeramanan S. 《World journal of microbiology & biotechnology》2011,27(9):2173-2185
Selected endophytic fungi have been report to be inulin degraders to produce fructose or other oligosaccharides. In this study,
the Aspergillus sp. producing inulinase were isolated from selected plant species at Serdang area in Malaysia. Fungal isolates were screened
solely based on inulin degrading enzymes production and two isolates named Asf1 and Onf1 were selected as the best inulinase
enzyme producers. Genomic DNA of these two isolates were extracted and amplified by polymerase chain reaction (PCR). A 1,341 bp
DNA fragment containing inulinase gene was successfully amplified from Asf1 fungal isolate and was named as inu2 gene in this study. Based on the morphological characteristics, rDNA and neighbour-joining phylogenetic analysis, Asf1 fungal
isolate could display closely-related to the genus of Aspergillus. The complete sequence designated Asf1 Inu2 gene was successfully obtained via rapid-amplification of cDNA ends-polymerase chain reaction (RACE-PCR). A 2.3 kb DNA fragment
encoding endoinulinase, inu2, from Asf1 fungal isolate includes an open reading frame of 1,552 bp with calculated molecular weight of 55,954.1 Da and
signal peptide sequence of 23 amino acids. The deduced amino acid sequence of the Asf1 inu2 displayed 97, 96, 69 and 22% identities
to that of A. ficuum inu2, A. niger inuB, P. purpurogenum and K. marxianus, respectively. Phylogenetic analysis showed that fungal endo- and exo-inulinases have indepently evolved with the respective
hydrolytic activities toward terminal and internal β-(2 → 1)-fructofuranosidic linkages in inulin. 相似文献
33.
Hayyan A Mjalli FS Hashim MA Hayyan M AlNashef IM Al-Zahrani SM Al-Saadi MA 《Bioresource technology》2011,102(20):9564-9570
An industrial grade acidic crude palm oil (ACPO) pre-treatment process was carried out using ethanesulfonic acid (ESA) as a catalyst in the esterification reaction. ESA was used in different dosages to reduce free fatty acid (FFA) to a minimum level for the second stage of biodiesel production via alkaline transesterification reaction. Different process operating conditions were optimized such as ESA dosage (0.25-3.5% wt/wt), methanol to ACPO molar ratio (1:1-20:1), reaction temperature (40-70 °C), and reaction time (3-150 min). This study revealed the potential use of abundant quantities of ACPO from oil palm mills for biodiesel production. The lab scale results showed the effectiveness of the pre-treatment process using ESA catalyst. Three consecutive catalyst recycling runs were achieved without significant degradation in its performance. Second and third reuse runs needed more reaction time to achieve the target level of FFA content. Esterification and transesterification using ESA and KOH respectively is proposed for biodiesel industrial scale production. The produced biodiesel meets the international standards specifications for biodiesel fuel (EN 14214 and ASTM D6751). 相似文献
34.
Hashim A Wang L Juneja K Ye Y Zhao Y Ming LJ 《Bioorganic & medicinal chemistry letters》2011,21(21):6430-6432
Cu(II) complexes of Alzheimer's disease-related β-amyloid (Aβ) peptides exhibit metal-centered oxidation chemistry. The metallo-Aβ complexes are the hallmark of the disease and have been attributed to the generation of reactive oxygen species (ROS), causing oxidative stress. In this communication, the inhibitions of the oxidative activity of Cu(II)-Aβ by vitamin B6 compounds pyridoxamine (PM), pyridoxine (PN), pyridoxal (PL), and pyridoxal-5'-phosphate (PLP) are presented. These B6's are competitive inhibitors toward dopamine oxidation by Cu(II)-Aβ(1-20), with K(i) values of 1.4, 8.3, 1.2, and 0.2mM, respectively. The phospho-moiety in PLP seems to exhibit cooperative inhibition, affording a clue for future design of inhibitors. 相似文献
35.
Nanyan?Noreen Wei?Yeng?Hooi Ali?Baradaran Mohamad?Rosfarizan Chin?Chin?Sieo Md?Illias?Rosli Khatijah?Yusoff Abdul?Rahim?RahaEmail author 《Microbial cell factories》2011,10(1):28
Background
Many plasmid-harbouring strains of Lactococcus lactis have been isolated from milk and other sources. Plasmids of Lactococcus have been shown to harbour antibiotic resistance genes and those that express some important proteins. The generally regarded as safe (GRAS) status of L. lactis also makes it an attractive host for the production of proteins that are beneficial in numerous applications such as the production of biopharmaceutical and nutraceutical. In the present work, strains of L. lactis were isolated from cow's milk, plasmids were isolated and characterised and one of the strains was identified as a potential new lactococcal host for the expression of heterologous proteins. 相似文献36.
Stelzer AC Frank AT Kratz JD Swanson MD Gonzalez-Hernandez MJ Lee J Andricioaei I Markovitz DM Al-Hashimi HM 《Nature chemical biology》2011,7(8):553-559
Current approaches used to identify protein-binding small molecules are not suited for identifying small molecules that can bind emerging RNA drug targets. By docking small molecules onto an RNA dynamic ensemble constructed by combining NMR spectroscopy and computational molecular dynamics, we virtually screened small molecules that target the entire structure landscape of the transactivation response element (TAR) from HIV type 1 (HIV-1). We quantitatively predict binding energies for small molecules that bind different RNA conformations and report the de novo discovery of six compounds that bind TAR with high affinity and inhibit its interaction with a Tat peptide in vitro (K(i) values of 710 nM-169 μM). One compound binds HIV-1 TAR with marked selectivity and inhibits Tat-mediated activation of the HIV-1 long terminal repeat by 81% in T-cell lines and HIV replication in an HIV-1 indicator cell line (IC(50) ~23.1 μM). 相似文献
37.
38.
Abstract. Workers of Crematogaster inflata possess the largest metapleural glands (relative to body size) known among ants, with reservoirs extending anteriorly up to the junction between the pro‐ and the mesothorax, and with over 1400 secretory cells on both sides together. This large secretory capacity is related to the gland's defensive function, which, in members of this species, is directed against larger arthropod and vertebrate enemies, and apparently not against microorganisms, in contrast to other ants, where the gland produces antibiotics. The gland is not equipped with any direct musculature. Secretion release is probably caused by contraction of the oblique longitudinal thorax muscles or by passive expulsion caused by external pressure. 相似文献
39.
Low KO Mahadi NM Rahim RA Rabu A Abu Bakar FD Murad AM Illias RM 《Journal of industrial microbiology & biotechnology》2011,38(9):1587-1597
Direct transport of recombinant protein from cytosol to extracellular medium offers great advantages, such as high specific
activity and a simple purification step. This work presents an investigation on the potential of an ABC (ATP-binding cassette)
transporter system, the hemolysin transport system, for efficient protein secretion in Escherichia coli (E. coli). A higher secretory production of recombinant cyclodextrin glucanotransferase (CGTase) was achieved by a new plasmid design
and subsequently by optimization of culture conditions via central composite design. An improvement of at least fourfold extracellular
recombinant CGTase was obtained using the new plasmid design. The optimization process consisted of 20 experiments involving
six star points and six replicates at the central point. The predicted optimum culture conditions for maximum recombinant
CGTase secretion were found to be 25.76 μM IPTG, 1.0% (w/v) arabinose and 34.7°C post-induction temperature, with a predicted
extracellular CGTase activity of 68.76 U/ml. Validation of the model gave an extracellular CGTase activity of 69.15 ± 0.71 U/ml,
resulting in a 3.45-fold increase compared to the initial conditions. This corresponded to an extracellular CGTase yield of
about 0.58 mg/l. We showed that a synergistic balance of transported protein and secretory pathway is important for efficient
protein transport. In addition, we also demonstrated the first successful removal of the C-terminal secretion signal from the transported fusion protein by thrombin proteolytic cleavage. 相似文献
40.
Beck CR McKenzie BC Hashim AB Harris RC Zanuzdana A Agboado G Orton E Béchard-Evans L Morgan G Stevenson C Weston R Mukaigawara M Enstone J Augustine G Butt M Kim S Puleston R Dabke G Howard R O'Boyle J O'Brien M Ahyow L Denness H Farmer S Figureroa J Fisher P Greaves F Haroon M Haroon S Hird C Isba R Ishola DA Kerac M Parish V Roberts J Rosser J Theaker S Wallace D Wigglesworth N Lingard L Vinogradova Y Horiuchi H Peñalver J Nguyen-Van-Tam JS 《PloS one》2011,6(12):e29249