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71.
72.
Tuomas Huovinen Hanna Sanmark Jani Ylä-Pelto Markus Vehniäinen Urpo Lamminmäki 《Molecular biotechnology》2010,44(3):221-231
Efficient display of antibody on filamentous phage M13 coat is crucial for successful biopanning selections. We applied a
directed evolution strategy to improve the oligovalent display of a poorly behaving Fab fragment fused to phage gene-3 for
minor coat protein (g3p). The Fab displaying clones were enriched from a randomly mutated Fab gene library with polyclonal
anti-mouse IgG antibodies. Contribution of each mutation to the improved phenotype of one selected mutant was studied. It
was found out that two point mutations had significant contribution to the display efficiency of Fab clones superinfected
with hyperphage. The most dramatic effect was connected to a start codon mutation, from AUG to GUG, of the PelB signal sequence
preceding the heavy chain. The clone carrying this mutation, FabMGUG, displayed Fab 19-fold better and yielded twofold higher phage titers than the original Fab. 相似文献
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Aim Aquatic–terrestrial ecotones are vulnerable to climate change, and degradation of the emergent aquatic macrophyte zone would have severe ecological consequences for freshwater, wetland and terrestrial ecosystems. Our aim was to uncover future changes in boreal emergent aquatic macrophyte zones by modelling the occurrence and percentage cover of emergent aquatic vegetation under different climate scenarios in Finland by the 2050s. Location Finland, northern Europe. Methods Data derived from different GIS sources were used to estimate future emergent aquatic macrophyte distributions in all catchments in Finland (848 in total). We used generalized additive models (GAM) with a full stepwise selection algorithm and Akaike information criterion to explore the main environmental determinates (climate and geomorphology) of emergent aquatic macrophyte distributions, which were derived from the national subclass of CORINE land‐cover classification. The accuracy of the distribution models (GAMs) was cross‐validated, using percentage of explained deviance and the area under the curve derived from the receiver‐operating characteristic plots. Results Our results indicated that emergent aquatic macrophytes will expand their distributions northwards from the current catchments and percentage cover will increase in all of the catchments in all climate scenarios. Growing degree‐days was the primary determinant affecting distributions of emergent aquatic macrophytes. Inclusion of geomorphological variables clearly improved model performance in both model exercises compared with pure climate variables. Main conclusions Emergent aquatic macrophyte distributions will expand due to climate change. Many emergent aquatic plant species have already expanded their distributions during the past decades, and this process will continue in the years 2051–80. Emergent aquatic macrophytes pose an increasing overgrowth risk for sensitive macrophyte species in boreal freshwater ecosystems, which should be acknowledged in management and conservation actions. We conclude that predictions based on GIS data can provide useful ‘first‐filter’ estimates of changes in aquatic–terrestrial ecotones. 相似文献
75.
Subtropical streams harbour higher genus richness and lower abundance of insects compared to boreal streams,but scale matters
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1. Ecogeographical rules refer to recurring patterns in nature, including the latitudinal diversity gradient (LDG), Rapoport's rule and Bergmann's rule, amongst others. In the present study, the existence of these rules was examined for diving beetles (Coleoptera: Dytiscidae), a family of aquatic predatory beetles. 2. Assemblage‐level data were analysed for diving beetles, focusing on species richness, local contribution to beta diversity (LCBD), mean range size and mean body size across the biogeographical provinces of Northern Europe. First, each of these variables was correlated with latitude, and then variation in each variable was modelled using actual environmental variables in boosted regression tree analysis. 3. Species richness was found to decrease with latitude, LCBD increased with latitude, mean range size did not show a significant relationship with latitude, and mean body size decreased with latitude. The latter finding was in contrast to Bergmann's rule. The actual environmental variables best predicting variation in these four response variables varied among the models, although they generally included temperature‐related and land use variables as the most influential ones. 4. The results obtained in the present study suggest that diving beetles conformed to the LDG, did not follow Rapoport's rule, and showed a reversed latitudinal gradient in the context of Bergmann's rule. In addition, species‐poor provinces harboured ecologically most unique faunas, suggesting that species richness and LCBD are complementary measures of biodiversity. 5. Even though general support was not found for most of the ecogeographical rules examined, the findings of the present study are interesting because they suggest that aquatic ectothermic invertebrates may show patterns different from those originally described for terrestrial endothermic vertebrates. 相似文献
78.
Mojca Lunder Miodrag Janić Miha Japelj Andrej Juretič Andrej Janež Mišo Šabovič 《Cardiovascular diabetology》2018,17(1):153
Background
Deteriorated arterial function and high incidence of cardiovascular events characterise diabetes mellitus. Metformin and recent antidiabetic drugs, SGLT2 inhibitors, reduce cardiovascular events. We explored the possible effects of empagliflozin’s effect on top of metformin treatment on endothelial function and arterial stiffness parameters in type 1 diabetes mellitus (T1DM) patients.Methods
Forty T1DM patients were randomised into three treatment groups: (1) empagliflozin (25 mg daily), (2) metformin (2000 mg daily) and (3) empagliflozin/metformin (25 mg daily and 2000 mg daily, respectively). The fourth group received placebo. Arterial function was assessed at inclusion and after 12 weeks treatment by: endothelial function [brachial artery flow-mediated dilation (FMD), reactive hyperaemia index (RHI)], arterial stiffness [pulse wave velocity (PWV) and common carotid artery stiffness (β-stiffness)]. For statistical analysis one-way analysis of variance with Bonferroni post-test was used.Results
Empagliflozin on top of metformin treatment significantly improved endothelial function as did metformin after 12 weeks of treatment: FMD [2.6-fold (P?<?0.001) vs. 1.8-fold (P?<?0.05)] and RHI [1.4-fold (P?<?0.01) vs. 1.3-fold (P?<?0.05)]. Empagliflozin on top of metformin treatment was superior to metformin in improving arterial stiffness parameters; it significantly improved PWV and β-stiffness compared to metformin [by 15.8% (P?<?0.01) and by 36.6% (P?<?0.05), respectively]. Metformin alone did not influence arterial stiffness.Conclusion
Empagliflozin on top of metformin treatment significantly improved arterial stiffness compared to metformin in T1DM patients. Endothelial function was similarly improved in all treatment groups. Empagliflozin seems to possess a specific capacity to decrease arterial stiffness, which could support its cardioprotective effects observed in large clinical studies.Trial registration Clinical trial registration: NCT0363954579.
Species‐poor and low‐lying sites are more ecologically unique in a hyperdiverse Amazon region: Evidence from multiple taxonomic groups
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Victor Lemes Landeiro Bárbarah Franz Jani Heino Tadeu Siqueira Luis Mauricio Bini 《Diversity & distributions》2018,24(7):966-977
Aim
We analysed beta‐diversity patterns of various biological groups simultaneously, from the perspective of site ecological uniqueness. We also investigated whether ecological uniqueness variation could be explained by variations in environmental conditions and spatial variables.Data
Central Amazonia.Methods
We estimated the total beta diversity and ecological uniqueness for 14 biological groups, including plants and animals, sampled at the same sites on a mesoscale in central Amazonia, Brazil. The uniqueness values for all biological groups were combined in a single matrix (multi‐taxa matrix of site uniqueness), which was then used as a response variable matrix in a partial redundancy analysis. We also investigated differences in the uniqueness patterns between plant and animal groups.Results
In general, plants showed higher total beta diversity than animals. For plants, uniqueness was explained mainly by environmental conditions, while for animals, uniqueness was also related to spatial variables. Although variation in uniqueness was mainly related to soil clay content, it is difficult to determine a single major environmental variable underlying the variation in uniqueness because the topographical gradient influences many of them, including soil clay content.Main Conclusion
The uniqueness values were higher in low‐lying areas, indicating that near‐stream sites were more ecologically unique. Despite the lower number of species in the lowlands, their unique biota contributed strongly to the maintenance of the total beta diversity of the area. This finding should be considered in conservation plans that aim to represent and preserve the regional biota. Our approach proved to be useful to analyse and compare the ecological uniqueness of multiple taxa.80.
Jani E. Lewis James K. Wahl III Kristin M. Sass Pamela J. Jensen Keith R. Johnson Margaret J. Wheelock 《The Journal of cell biology》1997,136(4):919-934
Squamous epithelial cells have both adherens junctions and desmosomes. The ability of these cells to organize the desmosomal proteins into a functional structure depends upon their ability first to organize an adherens junction. Since the adherens junction and the desmosome are separate structures with different molecular make up, it is not immediately obvious why formation of an adherens junction is a prerequisite for the formation of a desmosome. The adherens junction is composed of a transmembrane classical cadherin (E-cadherin and/or P-cadherin in squamous epithelial cells) linked to either β-catenin or plakoglobin, which is linked to α-catenin, which is linked to the actin cytoskeleton. The desmosome is composed of transmembrane proteins of the broad cadherin family (desmogleins and desmocollins) that are linked to the intermediate filament cytoskeleton, presumably through plakoglobin and desmoplakin. To begin to study the role of adherens junctions in the assembly of desmosomes, we produced an epithelial cell line that does not express classical cadherins and hence is unable to organize desmosomes, even though it retains the requisite desmosomal components. Transfection of E-cadherin and/or P-cadherin into this cell line did not restore the ability to organize desmosomes; however, overexpression of plakoglobin, along with E-cadherin, did permit desmosome organization. These data suggest that plakoglobin, which is the only known common component to both adherens junctions and desmosomes, must be linked to E-cadherin in the adherens junction before the cell can begin to assemble desmosomal components at regions of cell–cell contact. Although adherens junctions can form in the absence of plakoglobin, making use only of β-catenin, such junctions cannot support the formation of desmosomes. Thus, we speculate that plakoglobin plays a signaling role in desmosome organization.Squamous epithelial cells typically contain two prominent types of cell–cell junctions: the adherens junction and the desmosome. The adherens junction is an intercellular adhesion complex that is composed of a transmembrane protein (a classical cadherin) and numerous cytoplasmic proteins (α-catenin, β-catenin and plakoglobin, vinculin and α-actinin; for reviews see Takeichi, 1990; Geiger and Ayalon, 1992). The cadherins are directly responsible for adhesive interactions via a Ca2+-dependent, homotypic mechanism, i.e., in the presence of sufficient Ca2+, cadherin on one cell binds to an identical molecule on an adjacent cell. The desmosome, also an intercellular adhesion complex, is composed of at least two different transmembrane proteins (desmoglein and desmocollin) as well as several cytoplasmic proteins, including desmoplakins and plakoglobin (Koch and Franke, 1994). The transmembrane components of the desmosome are members of the broadly defined cadherin family and also require Ca2+ for adhesive activity. However, decisive experimental evidence for homophilic or heterophilic interactions between desmosomal cadherins via their extracellular domains has not yet been presented (Koch and Franke, 1994; Kowalczyk et al., 1996). While members of the cadherin family constitute the transmembrane portion of both adherens junctions and desmosomes, the different classes of cadherins are linked to different cytoskeletal elements by the cytoplasmic components of each junction. Specifically, the classical cadherins are linked to actin filaments and the desmosomal cadherins to intermediate filaments.The organization of the proteins within the adherens junction is well understood (for reviews see Kemler, 1993; Cowin, 1994; Wheelock et al., 1996). Specifically, the intracellular domain of cadherin interacts directly with either plakoglobin or β-catenin, which in turns binds to α-catenin (Jou et al., 1995; Sacco et al., 1995). α-Catenin interacts with α-actinin and actin filaments, thereby linking the cadherin/ catenin complex to the cytoskeleton (Knudsen et al., 1995; Rimm et al., 1995). Cadherin/catenin complexes include either plakoglobin or β-catenin but not both (Näthke et al., 1994). The importance of the classical cadherins to the formation of adherens junctions and desmosomes has been demonstrated. Keratinocytes maintained in medium with low Ca2+ (i.e., 30 μM) grow as a monolayer and do not exhibit adherens junctions or desmosomes; however, elevation of Ca2+ concentration induces the rapid formation of adherens junctions followed by the formation of desmosomes (Hennings et al., 1980; Tsao et al., 1982; Boyce and Ham, 1983; Hennings and Holbrook, 1983; O''Keefe et al., 1987; Wheelock and Jensen, 1992; Hodivala and Watt, 1994; Lewis et al., 1994). Simultaneous blocking with functionperturbing antibodies against the two classical cadherins (E- and P-cadherin) found in keratinocytes inhibits not only Ca2+-induced adherens junction formation but also severely limits desmosome formation (Lewis et al., 1994; Jensen et al., 1996). Consistent with these findings, expression of a dominant-negative cadherin by keratinocytes results in decreased E-cadherin expression and delayed assembly of desmosomes (Fujimori and Takeicki, 1993; Amagai, et al., 1995). These data suggest some form of cross-talk between the proteins of the adherens junction and those of the desmosome. One candidate protein that might mediate such cross-talk is plakoglobin, since it is the only known common component of both junctions.Plakoglobin is found to be associated with the cytoplasmic domains of both the classical cadherins and the desmosomal cadherins. Despite the high degree of identity between plakoglobin and β-catenin (65% at the amino acid level; Fouquet et al., 1992), β-catenin only associates with the classical cadherins and not with the desmosomal cadherins. In the adherens junction, plakoglobin and β-catenin have at least one common function, i.e., the linking of cadherin to α-catenin and thus to actin. However, there is emerging evidence that other functions of these two proteins are not identical. For example, in a study by Navarro et al. (1993), E-cadherin transfected into a spindle cell carcinoma was shown to associate with α- and β-catenin, but not with the low levels of endogenous plakoglobin. The transfected cells did not revert to a more epithelial morphology in spite of the presence of functional E-cadherin, and the authors suggested that the lack of plakoglobin may have prevented such morphological reversion.In the present study, we have tested the hypothesis that plakoglobin, through its interaction with E- or P-cadherin, serves as a regulatory molecule for desmosome organization. Even though plakoglobin is not an essential structural component of the adherens junction (Sacco et al., 1995), our data indicate that plakoglobin can function as a regulator of desmosome formation only when it is associated with a classical cadherin. Thus, we propose that plakoglobin has at least two functions: (a) as a structural component of the adherens junction and the desmosome and (b) as a signaling molecule that regulates communication between the adherens junction and the desmosome. 相似文献