Nematode Assemblages in Bauxite Residue with Different Restoration Histories

Bauxite residue disposal areas may be amended and re‐vegetated to facilitate the ecosystem restoration process. However, the development of the belowground system during restoration is frequently overlooked. In turn, although vegetation establishment on bauxite residue is well studied, virtually nothing is known about concurrent changes in the soil biota. In order to understand how different amendments and re‐vegetation influence the belowground community, we compared nematode assemblages from bauxite residues that differed in their treatment history (compost addition, gypsum addition, and time since re‐vegetation), and examined whether any differences were related to changes in soil properties. No nematodes were present in the unamended treatment, thus indicating a need for amelioration of substrate properties. However, there were differences in the nematode assemblage between the other amended treatments. The quantity of gypsum reduced nematode density, but had no effect on taxa richness or the Maturity Index in treatments amended in the same year. Nematode taxa richness and the Maturity Index were greatest in the treatment re‐vegetated earliest. Moreover, the Maturity Index was negatively correlated to soil pH and percentage Na. These findings indicate that sufficient amendment and re‐vegetation are crucial to address inhibitory characteristics of the residue and aid restoration of the belowground system in bauxite residues.     

Mid-Holocene coral community data as baselines for understanding contemporary reef ecological states

Land-use changes and associated deteriorations in water quality are cited as major drivers of marine ecosystem change, and can modify community abundance and diversity on coral reefs. This study uses palaeoecological data derived from a mid-Holocene age coral reef in the Wet Tropics region of Australia's Great Barrier Reef to develop a record of coral community composition and diversity, from a period that significantly pre-dates European settlement in the region. Major changes in catchment sediment and nutrient yields since European settlement have been documented, and thus the data presented provides a baseline against which to compare contemporary ecological datasets. Natural variations in coral assemblage composition, as preserved in core records, clearly occurred in this mid-Holocene reef and were associated with the reef shallowing to sea level as it accreted vertically. Comparisons between modern and mid-Holocene coral community data from equivalent water depths did not reveal marked shifts in coral community composition and diversity, suggesting the long-term persistence of a resilient coral assemblage over these time periods.     

A thermodynamically motivated model for stress-fiber reorganization

We present a model for stress-fiber reorganization and the associated contractility that includes both the kinetics of stress-fiber formation and dissociation as well as the kinetics of stress-fiber remodeling. These kinetics are motivated by considering the enthalpies of the actin/myosin functional units that constitute the stress fibers. The stress, strain and strain rate dependence of the stress-fiber dynamics are natural outcomes of the approach. The model is presented in a general 3D framework and includes the transport of the unbound stress-fiber proteins. Predictions of the model for a range of cyclic loadings are illustrated to rationalize hitherto apparently contrasting observations. These observations include: (1) For strain amplitudes around 10 % and cyclic frequencies of about 1 Hz, stress fibers align perpendicular to the straining direction in cells subjected to cyclic straining on a 2D substrate while the stress fibers align parallel with the straining direction in cells constrained in a 3D tissue. (2) At lower applied cyclic frequencies, stress fibers in cells on 2D substrates display no sensitivity to symmetric applied strain versus time waveforms but realign in response to applied loadings with a fast lengthening rate and slow shortening. (3) At very low applied cyclic frequencies (on the order of mHz) with symmetric strain versus time waveforms, cells on 2D substrates orient perpendicular to the direction of cyclic straining above a critical strain amplitude.     

Disruption of N-acyl-homoserine lactone-specific signalling and virulence in clinical pathogens by marine sponge bacteria

In recent years, the marine environment has been the subject of increasing attention from biotechnological and pharmaceutical industries. A combination of unique physicochemical properties and spatial niche-specific substrates, in wide-ranging and extreme habitats, underscores the potential of the marine environment to deliver on functionally novel bioactivities. One such area of ongoing research is the discovery of compounds that interfere with the cell–cell signalling process called quorum sensing (QS). Described as the next generation of antimicrobials, these compounds can target virulence and persistence of clinically relevant pathogens, independent of any growth-limiting effects. Marine sponges are a rich source of microbial diversity, with dynamic populations in a symbiotic relationship. In this study, we have harnessed the QS inhibition (QSI) potential of marine sponge microbiota and through culture-based discovery have uncovered small molecule signal mimics that neutralize virulence phenotypes in clinical pathogens. This study describes for the first time a marine sponge Psychrobacter sp. isolate B98C22 that blocks QS signalling, while also reporting dual QS/QSI activity in the Pseudoalteromonas sp. J10 and ParacoccusJM45. Isolation of novel QSI activities has significant potential for future therapeutic development, of particular relevance in the light of the pending perfect storm of antibiotic resistance meeting antibiotic drug discovery decline.     

Complex permittivity of representative biological solutions in the 2–67 GHz range

The main purpose of this study is to provide experimental data on the complex permittivity of some biological solutions in the 2–67 GHz range at room and human body temperatures. The permittivity measurements are performed using an open‐ended coaxial probe. Permittivity spectra of several representative monomolecular solutions of proteins, amino acids, nucleic acids, and carbohydrates are analyzed and compared. Furthermore, measurements have also been performed for complex biomolecular solutions, including bovine serum albumin (BSA)–DNA–glucose mixture, culture medium, and yeast extract solution. The results demonstrate that for concentrations below 1%, the permittivity spectra of the solutions do not substantially differ from that of distilled water. Measurements carried out for 4% and 20% BSA solutions show that the presence of proteins results in a decrease in permittivity. For highly concentrated RNA solutions (3%), a slight increase in the imaginary part of the permittivity is observed below 10 GHz. Experimental data show that free water permittivity can be used for modeling of the culture medium above 10 GHz. However, at lower frequencies a substantial increase in the imaginary part of the permittivity due to ionic conductivity should be carefully taken into account. A similar increase has also been observed for the yeast extract solution in the lower frequency region of the considered spectrum. Above 10 GHz, the high concentration of proteins and other low‐permittivity components of the yeast extract solution results in a decrease in the complex permittivity compared to that of water. Obtained data are of utmost importance for millimeter‐wave dosimetry studies. Bioelectromagnetics 33:346–355, 2012. © 2011 Wiley Periodicals, Inc.     

Can tooth differentiation help to understand species coexistence? The case of wood mice in China

Five wood mice Apodemus species occur across China, in allopatry but also in sympatry up to cases of syntopy. They all share a similar external appearance, similar habitats of grasslands and forests and a generalist feeding behaviour. This overall similarity raises questions about the mechanisms insuring competition avoidance and allowing the coexistence of the species. In this context, a morphometric analysis of two characters related to feeding (mandible and molar) addressed the following issues: (1) Were the species actually different in size and/or shape of these characters, supporting their role in resource partitioning? (2) Did this pattern of phenotypic divergence match the neutral genetic differentiation, suggesting that differentiation might have occurred in a former phase of allopatry as a result of stochastic processes? (3) Did the species provide evidence of character displacement when occurring in sympatry, supporting an ongoing role of competition in the interspecific divergence? Results evidenced first that different traits, here mandibles and molars, provided discrepant pictures of the evolution of the Apodemus group in China. Mandible shape appeared as prone to vary in response to local conditions, blurring any phylogenetic or ecological pattern, whereas molar shape evolution appeared to be primarily driven by the degree of genetic differentiation. Molar size and shape segregated the different species in the morphospace, suggesting that these features may be involved in a resource partitioning between Apodemus species. The morphological segregation of the species, likely achieved by processes of differentiation in isolation promoted by the complex landscape of China, could contribute to competition avoidance and hence explain why no evidence was found of character displacement.     

A study of D‐lactate and extracellular methylglyoxal production in lactate Re‐Utilizing CHO cultures

In large‐scale mammalian cell culture, the key toxic by‐products assessed and monitored are lactate and ammonia. Often no distinction between the two isoforms of lactate is made. Here, we present profiles of both D ‐ and L ‐lactate. D ‐Lactate is the end molecule of the methylglyoxal pathway. D ‐Lactate unlike L ‐lactate is not re‐utilized, and although during normal culture time frames it represents one‐tenth of total lactate, during lactate re‐use it represents nearly 35%. This indicates significant carbon flow through pathways not associated with primary metabolites. We have observed that the behavior of D ‐lactate is radically different from that of L ‐lactate with the level of one isoform changing, whilst the concentration of the other remains constant. This is an example of an alternate carbon flow pathway containing metabolic intermediates that may potentially have a detrimental effect on cells. The activity of the methylglyoxal pathway when measured as a proportion of glucose consumption in this study far exceeds any previously reported. This highlights the potential importance of “non‐primary” metabolisms to long lifespan mammalian fermentation practices. Biotechnol. Bioeng. 2010;107: 182–189. © 2010 Wiley Periodicals, Inc.