Investigating Models of Protein Function and Allostery With a Widespread Mutational Analysis of a Light-Activated Protein

To investigate the relationship between a protein’s sequence and its biophysical properties, we studied the effects of more than 100 mutations in Avena sativa light-oxygen-voltage domain 2, a model protein of the Per-Arnt-Sim family. The A. sativa light–oxygen–voltage domain 2 undergoes a photocycle with a conformational change involving the unfolding of the terminal helices. Whereas selection studies typically search for winners in a large population and fail to characterize many sites, we characterized the biophysical consequences of mutations throughout the protein using NMR, circular dichroism, and ultraviolet/visible spectroscopy. Despite our intention to introduce highly disruptive substitutions, most had modest or no effect on function, and many could even be considered to be more photoactive. Substitutions at evolutionarily conserved sites can have minimal effect, whereas those at nonconserved positions can have large effects, contrary to the view that the effects of mutations, especially at conserved positions, are predictable. Using predictive models, we found that the effects of mutations on biophysical function and allostery reflect a complex mixture of multiple characteristics including location, character, electrostatics, and chemistry.     

Larva and pupa of Cyphopisthes descarpentriesi Paulian (Coleoptera: Scarabaeoidea: Ceratocanthidae) and their phylogenetic implications

Abstract Pupae and mature larvae of the Australian ceratocanthid beetle, Cyphopisthes descarpentriesi Paulian 1977, are described and extensively illustrated. This is the sixth species of the family for which immature stages are known and the first from the Australian region. Unlike other ceratocanthid larvae described before, those of Cyphopisthes Gestro lack stridulatory teeth on the middle and hind legs and any trace of a frontoclypeal suture on the cranium. Reduced one-segmented labial palpi in Cyphopisthes are unique in Scarabaeoidea. Monophyly of the family is not corroborated by larval characters. Absence of spiracular closing apparatus in larvae is reported in the family for the first time. Like pupae of Ceratocanthus White and Germarostes Paulian, those of Cyphopisthes have thoracic projections, but their shape and location are different. Spiracles are found on abdominal segments 2−4 of pupa; that on segment 2 differs in colour and location from the others.     

Interspecific dominance and the foraging behaviour of juncos

We observed mixed groups of dark-eyed juncos (Junco hyemalis) and grey-headed juncos (Junco caniceps) at baited sites in northern Arizona during the non-breeding season. In interspecific and inter-racial conflicts, J. caniceps dorsalis was dominant to J. caniceps caniceps and to two races of dark-eyed juncos. Junco caniceps dorsalis also fed significantly faster than any of the other juncos. For both species, feeding rates were approximately the same in large and small mixed-species groups, though in larger groups, individual grey-headed juncos won conflicts at a higher rate and individual dark-eyed juncos lost conflicts at a higher rate. Also, dark-eyed juncos fed at a significantly lower rate in groups comprised mostly of grey-headed juncos than in groups of similar size but composed mostly of conspecifics. Residency times and recapture probabilities were similar for the two species, suggesting little difference in over-winter survival.     

Termite Prey Specialization in the Pitcher Plant Nepenthes albomarginata--Evidence from Stable Isotope Analysis

Old World pitcher plants (Nepenthes spp., Nepenthaceae) trapand digest invertebrate prey to derive nutrients, primarilynitrogen (N). In the majority of lowland Nepenthes species studiedto date, ants (Hymenoptera, Formicidae) are numerically thedominant prey taxon. Nepenthes albomarginata is unusual in showingan apparent bias towards the capture of termites (Isoptera).We tested the hypothesis that N. albomarginata derives N fromtermite capture, by comparison of foliar stable N isotope abundance(