Elimination of basic gaps at high pH values in 2‐DE

The appearance of gaps, vertical lanes lacking protein spots at the cathodic end of 2‐D maps generated with wide range IPG‐strips exceeding a pH value of 9, is shown to depend on the electro‐osmotic transport of water into the IPG‐strip. Substitution of urea solution with water is demonstrated to increase the hydrolysis rate of polyacrylamide in IPG‐strips explaining the gap formation. The use of 8 M urea or thiourea/urea solutions in the electrode wick enables overnight focusing without the appearance of gaps.     

Diel Vertical Migration of zooplankton in a eutrophic bay of Lake Victoria

We studied the Diel Vertical Migration (DVM) of several zooplankton taxa and an important zooplanktivore Rastrineobola argentea in a eutrophic bay of Lake Victoria for a total of 3 months during wet and dry seasons. Zooplankton were sampled twice a month at full moon and new moon. The zooplankton community of this lake was numerically dominated by cyclopoid copepods (>80%) of which 80% were juveniles. The composition of zooplankton was not significantly different (P > 0.05) for the different sampling months (November 2000, March 2001 and July 2001), but total zooplankton abundance was significantly lower (P < 0.05) in July (dry season) than during March or November (wet seasons). DVM behaviour was observed in some of the zooplankton groups including Tropocyclops spp., Thermocyclops spp., Thermodiaptomus galeboides and Diaphanosoma excisum. In these groups, we also observed that they were significantly (P < 0.05) more abundant at full moon than at new moon in some months, a pattern not seen in non-DVM groups. The amplitude of migration tended to be higher at new moon than full moon for all DVM zooplankton but not significantly so (P > 0.05). The zooplanktivore R. argentea exhibits typical DVM behaviour, perhaps to avoid visual predation itself, but it also increases the predation pressure on zooplankton in deeper waters. Feeding times for R. argentea peak just after dusk and dawn. For the copepod calanoid T. galeboides, there was a strong relationship (P < 0.05) between the amplitude of migration and midday (12:00) water transparency, suggesting that these zooplankton may have descended deeper on days with higher water transparency. In the absence of temperature and food gradients but with predation pressure from a migrating zooplanktivore, the depth of descent of zooplankton may be well associated with water transparency.     

Thermal growth performance of juvenile brown trout Salmo trutta: no support for thermal adaptation hypotheses

Using thermal growth data from eight populations of anadromous and lake-feeding brown trout Salmo trutta , hypotheses of adaptation to local optima and countergradient variation in growth were tested. The adaptation to local optima hypothesis suggests that natural selection can shift optimal performance temperatures to match the prevailing temperature in a new or changed thermal niche. In contradiction, the countergradient variation hypothesis suggests that populations from hostile environments perform better than conspecifics from benign environments at all temperatures. In this study, growth capacity varied between populations but there was no significant correlation between any of the estimated thermal performance parameters ( e.g. lower and upper thermal growth limits, optimal temperature for growth and maximum growth capacity) and natural climatic conditions among populations. Hence, S. trutta growth response to temperature lends no support for either of the two suggested thermal adaptation hypotheses. Instead, growth capacity among populations tended to correlate positively with female size at maturity.     

Synaptic and extrasynaptic GABA transporters as targets for anti-epileptic drugs

Inhibition of the GABA transporter subtype GAT1 by the clinically available anti-epileptic drug tiagabine has proven to be an effective strategy for the treatment of some patients with partial seizures. In 2005, the investigational drug EF1502 was described as possessing activity at both GAT1 and BGT-1. When combined with the GAT1 selective inhibitor tiagabine, EF1502 was found to possess a synergistic anti-convulsant action in the Frings audiogenic seizure-susceptible mouse model of reflex epilepsy. This effect was subsequently attributed to inhibition of BGT-1. In this study, the anti-convulsant effect of the GAT2/3 inhibitor SNAP-5114 was assessed in the Frings audiogenic seizure-susceptible mouse alone, and in combination with tiagabine and EF1502. The results showed that SNAP-5114 produced a synergistic anti-convulsant effect in combination with EF1502 but not when used in combination with tiagabine. These findings support anatomical evidence that GAT2/3 are most likely located at the synapse in close proximity to GAT1; whereas BGT-1 is located some distance away from the synapse and GAT1 and GAT2/3. Lastly, EF1502 and tiagabine were evaluated alone, and in combination, in the corneal kindled mouse model of partial epilepsy. The results of this evaluation provide further evidence in support of a role for BGT-1 in the control of seizure activity. In addition, they suggest that the combined inhibition of GAT1 and BGT-1 may afford some advantage over inhibiting either transporter alone.     

The neutrophil recombinatorial TCR-like immune receptor is expressed across the entire human life span but repertoire diversity declines in old age

Recent evidence has revealed the existence of T cell receptor (TCR) αβ-based recombinatorial immune receptors in phagocytes. Here, we performed a systematic survey of the variable β-chain repertoires of the neutrophil TCR-like αβ immunoreceptor (referred to as TCRL(n)αβ) in defined cohorts of young and old individuals. Peripheral blood CD15(+) neutrophils from young adults (age 30 ± 7 years, n=12) expressed an average number of 13 ± 6 distinct TCRL(n) Vβ-chains from the total pool of 25 human Vβ-chains. Neutrophils from aged subjects (age 76 ± 6 years, n=12) also consitutively express the TCRL(n), however, only a small number of Vβ-chains is used (4 ± 2). Consistent with this, the average number of expressed CDR3 Vβ length variants was fourfold higher in young individuals than in aged subjects (33 ± 24 vs. 8 ± 3). Young adults showed broad usage of all TCRL(n) Vβ-chains. In contrast, >70years individuals displayed a striking repertoire polarization towards the TCRL(n) Vβ1 and Vβ5b chains and a high degree of Vβ5b clonotype sharing. Our study reveals broad TCRL(n) repertoire diversity in young adults and demonstrates that the neutrophil variable immune receptor is expressed throughout the entire human life span. The marked decline in TCRL(n) repertoire diversity in old age identifies a novel mechanism of immunosenescence in neutrophils.     

Spatial insulin signalling in isolated skeletal muscle preparations

During in vitro incubation in the absence or presence of insulin, glycogen depletion occurs in the inner core of the muscle specimen, concomitant with increased staining of hypoxia‐induced‐factor‐1‐alpha and caspase‐3, markers of hypoxia and apoptosis, respectively. The aim of this study was to determine whether insulin is able to diffuse across the entire muscle specimen in sufficient amounts to activate signalling cascades to promote glucose uptake and glycogenesis within isolated mouse skeletal muscle. Phosphoprotein multiplex assay on lysates from muscle preparation was performed to detect phosphorylation of insulin‐receptor on Tyr¹¹⁴⁶, Akt on Ser⁴⁷³ and glycogen‐synthases‐kinase‐3 on Ser²¹/Ser⁹. To address the spatial resolution of insulin signalling, immunohistochemistry studies on cryosections were performed. Our results provide evidence to suggest that during the in vitro incubation, insulin sufficiently diffuses into the centre of tubular mouse muscles to promote phosphorylation of these signalling events. Interestingly, increased insulin signalling was observed in the core of the incubated muscle specimens, correlating with the location of oxidative fibres. In conclusion, insulin action was not restricted due to insufficient diffusion of the hormone during in vitro incubation in either extensor digitorum longus or soleus muscles from mouse under the specific experimental settings employed in this study. Hence, we suggest that the glycogen depleted core as earlier observed is not due to insufficient insulin action. J. Cell. Biochem. 109: 943–949, 2010. © 2010 Wiley‐Liss, Inc.     

Assessing the phylogenetic utility of sequence heterochrony: evolution of avian ossification sequences as a case study

The evolution of developmental sequences, or sequence heterochrony, is an emerging field of study that addresses the temporal interplay between evolution and development. Some phylogenetic signal has been found in developmental sequence data, but sampling has generally been limited to small numbers of taxa and few developmental events. Here we present the largest ossification sequence dataset to date. The sequences are composed of ossification events throughout the avian skeleton, and are used to address the evolutionary signal of ossification sequence data within this clade. The results indicate that ossification sequences are conserved in birds, and show a stronger phylogenetic signal than previous studies, perhaps due to the volume of data. Phylogenetic signal is not strong enough, however, to consider ossification sequence data to be any better at resolving phylogenetic hypotheses than other morphological data and just as prone to evolutionary convergence. There is no one-to-one correlation between ossification sequence and developmental stage. We discuss some methodological implications of our findings, as well as commonalities in avian ossification sequences such as early ossification of the long bones relative to the dermatocranium, and of the hindlimb over the forelimb.