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31.
Michal Jarnik Jiang-Qing Tang Maria Korab-Laskowska Ewa Zie
tkiewicz Guy Cardinal Izabella Gorska-Flipot Daniel Sinnett Damian Labuda 《Genomics》1996,36(3):388
We studied two systems of multilocus markers revealed by PCR using primers directing amplification betweenAlurepeats in a tail-to-tail orientation. Genomic polymorphisms were detected as the presence or absence of the electrophoretic bands representing DNA fragments of a given length. A total of 104 such fragments segregating as Mendelian markers in a panel of eight CEPH families were analyzed by two-point linkage analysis. Fifty-one of these fragments were localized with respect to CEPH markers; they represented 33 loci, 7 of which were multiallelic. Locus-specific oligonucleotides were developed and used as hybridization probes to identify the mapped loci within a complex pattern of inter-AluPCR products. A great proportion of inter-AluPCR polymorphisms represented length variants within amplified DNA segments, while others were presumably due to mutations within the priming sites. To describe the expected number of informative loci per typing experiment we introduced a parameter called overall informativity (OI), which provides a single measure of the multiplex ratio and the informativity of markers contributing to a multilocus system (OIof a single locus is equivalent to its heterozygosity and cannot exceed 0.5 for a biallelic codominant marker). HighOIvalues (5.8 and 11.5) of the two presented systems of inter-AluPCR markers of random chromosomal distribution render them suitable for mapping genomic rearrangements such as genomic deletions in tumoral tissues. This was illustrated by the detection of loss of heterozygosity in the 9q22–qter region in sporadic colon cancer. 相似文献
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33.
In 1981–1992, the breeding fauna of 153 fishponds was studies in three fishpond regions in south Bohemia (Czechoslovakia). On each pond, all water and wetland birds were censused by the Two-check method, which consists of adult birds counts during each breeding season (the first in the second part of May, and the second in the second part of June). We assessed the numbers of all species living in water and wetland habitats in the breeding season.The decline in abundances (expressed as number of individuals) of ducks (Anatinae), grebes (Podicipediformes), Coot (Fulica atra), Moorhen (Galinulla chloropus), Black-headed Gull (Larus ridibundus) were the most marked changes recorded. Marked increase in abundances was found in Cormorant (Phalacrocorax carbo) and Mute Swan (Cygnus olor) during the whole decade, whereas in Graylag Goose (Anser anser) the increase was restricted to the first half of the period under study. Numbers of charadriform and passeriform birds fluctuated in the dependence of water level variation. 相似文献
34.
Evolution of secondary structure in the family of 7SL-like RNAs 总被引:8,自引:0,他引:8
Primate and rodent genomes are populated with hundreds of thousands copies of Alu and B1 elements dispersed by retroposition, i.e., by genomic reintegration of their reverse transcribed RNAs. These, as well as primate BC200 and rodent 4.5S RNAs, are ancestrally related to the terminal portions of 7SL RNA sequence. The secondary structure of 7SL RNA (an integral component of the signal recognition particle) is conserved from prokaryotes to distant eukaryotic species. Yet only in primates and rodents did this molecule give rise to retroposing Alu and B1 RNAs and to apparently functional BC200 and 4.5S RNAs. To understand this transition and the underlying molecular events, we examined, by comparative analysis, the evolution of RNA structure in this family of molecules derived from 7SL RNA.RNA sequences of different simian (mostly human) and prosimian Alu subfamilies as well as rodent B1 repeats were derived from their genomic consensus sequences taken from the literature and our unpublished results (prosimian and New World Monkey). RNA secondary structures were determined by enzymatic studies (new data on 4.5S RNA are presented) and/or energy minimization analyses followed by phylogenetic comparison. Although, with the exception of 4.5S RNA, all 7SL-derived RNA species maintain the cruciform structure of their progenitor, the details of 7SL RNA folding domains are modified to a different extent in various RNA groups. Novel motifs found in retropositionally active RNAs are conserved among Alu and B1 subfamilies in different genomes. In RNAs that do not proliferate by retroposition these motifs are modified further. This indicates structural adaptation of 7SL-like RNA molecules to novel functions, presumably mediated by specific interactions with proteins; these functions were either useful for the host or served the selfish propagation of RNA templates within the host genome.Abbreviations FAM
fossil Alu element
- FLAM
free left Alu monomer
- FRAM
free right Alu monomer
- L-Alu
left Alu subunit
- R-Alu
right Alu subunit
Correspondence to: D. LabudaDedicated to Dr. Robert Cedergren on the occasion of his 25th anniversary at the University of Montreal 相似文献
35.
A growth analysis was made of ultraviolet-B (UV-B)-sensitive (Poinsett) and insensitive (Ashley) cultivars of Cucuumis satives L. grown in growth chambers at 600 μmol m−2 s−1 of photosynthetic photon flux (PPF) provided by red- and far-red-deficient metal halide (MH) or blue- and UV-A-deficient high pressure sodium/deluxe f HPS/DX) lamps. Plants were irradiated 6 h daiiy with 0.2 f-UV-B) or 18.2 C+UV-B) kJ m−2 day−1 of biologically effective UV-B for 8 or 15 days from time of seeding. In general, plants given supplemental UV-B for 15 days showed lower leaf area ratio (LARs, and higher specific leaf mass (SLM) mean relative growth rate (MRGR) and net assimilation rate (NAR) than that of control plants, but they showed no difference in leaf mass ratio (LMR), Plants grown under HPS/DX lamps vs MH lamps showed higher SLM and NAR. lower LAR and LMR. hut no difference in MRGR. LMR was the only growth parameter affected by cultivar: at 15 days, it was slightly greater in Poinsett than in Ashley. There were no interactive effects of UV-B. PPF source or cultivar on any of the growth parameters determined, indicating that the choice of either HPS/DX or MH lamps should not affect growth response to UV-B radiation. This was true even though leaves of UV-B-irradiated plants grown under HPS/DX lamps have been shown to have greater chlorosis than those grown under MH lamps. 相似文献
36.
Angel G. Hernandez Ana Rascon Shirley Kutner Henry Roman Zulaika Campos 《Molecular biology reports》1993,18(3):189-195
A correlation between the ratio of the cell surface protease activity to phosphatase activity and the complexity of the pattern of cell surface exposed polypeptides ofLeishmania promastigotes was demonstrated for various strains grown under similar conditions. The ratio of the cell surface protease activity to acid phosphatase activity was high forL. major andL.b. panamensis and it correlates with the expression of a single polypeptide of 63 KDa on their cell surface. Intermediate and lower ratios of these enzymatic activites relate with more complex radio-iodinated patterns: two main bands inL.b. guyanensis (70 and 58 KDa) andL.b. braziliensis (72 and 60 KDa) and three main bands 65, 50, 27 KDa in allL.m. mexicana strains tested. Evidence is presented that the acid phosphatase located on theL.m. mexicana cell surface is not an artifact due to a secondary absorption of the secreted acid phosphatase from the culture medium. These results confirm theLeishmania antigen cell surface heterogeneity. The implications on the biology ofLeishmania and the clinical manifestation of leishmaniasis are discussed. 相似文献
37.
Marco Patacca Marcus Lindner Manuel Esteban Lucas-Borja Thomas Cordonnier Gal Fidej Barry Gardiner Ylva Hauf Gediminas Jasinevičius Sophie Labonne Edgaras Linkevičius Mats Mahnken Slobodan Milanovic Gert-Jan Nabuurs Thomas A. Nagel Laura Nikinmaa Momchil Panyatov Roman Bercak Rupert Seidl Masa Zorana Ostrogović Sever Jaroslaw Socha Dominik Thom Dijana Vuletic Sergey Zudin Mart-Jan Schelhaas 《Global Change Biology》2023,29(5):1359-1376
Over the last decades, the natural disturbance is increasingly putting pressure on European forests. Shifts in disturbance regimes may compromise forest functioning and the continuous provisioning of ecosystem services to society, including their climate change mitigation potential. Although forests are central to many European policies, we lack the long-term empirical data needed for thoroughly understanding disturbance dynamics, modeling them, and developing adaptive management strategies. Here, we present a unique database of >170,000 records of ground-based natural disturbance observations in European forests from 1950 to 2019. Reported data confirm a significant increase in forest disturbance in 34 European countries, causing on an average of 43.8 million m3 of disturbed timber volume per year over the 70-year study period. This value is likely a conservative estimate due to under-reporting, especially of small-scale disturbances. We used machine learning techniques for assessing the magnitude of unreported disturbances, which are estimated to be between 8.6 and 18.3 million m3/year. In the last 20 years, disturbances on average accounted for 16% of the mean annual harvest in Europe. Wind was the most important disturbance agent over the study period (46% of total damage), followed by fire (24%) and bark beetles (17%). Bark beetle disturbance doubled its share of the total damage in the last 20 years. Forest disturbances can profoundly impact ecosystem services (e.g., climate change mitigation), affect regional forest resource provisioning and consequently disrupt long-term management planning objectives and timber markets. We conclude that adaptation to changing disturbance regimes must be placed at the core of the European forest management and policy debate. Furthermore, a coherent and homogeneous monitoring system of natural disturbances is urgently needed in Europe, to better observe and respond to the ongoing changes in forest disturbance regimes. 相似文献
38.
This paper approaches the problem of oxygen mass transfer. This transfer is in antibiotic biosynthesis liquids produced by microorganisms belonging to the actinomycete and fungi classes, which exhibit a shear thinning non-Newtonian rheological behaviour. The volumetric oxygen mass transfer coefficients in these liquids (kL ab) change during biosynthesis processes. The change is mainly due to rheological parameter modifications, such as increasing the consistency index (K) and decreasing the flow behaviour index (n). The values of kL ab were 3.0–6.5 times lower than those recorded in water, and their decreasing depended on the kL a values obtained without biological liquid and on the nature of fermentation broths, as well. Starting from experimental data, two correlations were established between kL ab and P/V,υSG and P/V,υSG, N, respectively. These correlations contain a dimensionless factor (ηam/ηg), which takes into account the rheological properties of the liquid phase and offers the possibility for a fast and sufficiently accurate estimation of kL ab. The empirical correlations developed in the paper correspond reasonably well with the relatively wide variety of experimental data, as in the model proposed by PEREZ and SANDALL , and allow for the comparison of the fermentation batches of the same or different microorganisms; also, they may be applied to the workings of design, scale-up, control and monitoring of bioreactors. 相似文献
39.
David A. Flemer Roman S. Stanley Barbara F. Ruth Charles M. Bundrick Paul H. Moody James C. Moore 《Hydrobiologia》1995,308(2):85-101
Two six-week laboratory experiments were conducted to evaluate effects of pesticides and microcosm size on benthic estuarine
macroinvertebrate recolonization. Sediments fortified with the pesticides (fenvalerate: controls, 5 (low) and 50 μg g−1 wet sediment (high); endosulfan: controls, 1 (low) and 10 μg g−1 wet sediment (high)) were fine-grained, organically rich (approximately 3.5% organic carbon and 22% dry weight) material.
Relative dominance of the four most abundant taxa in both experiments was consistent among treatments with few exceptions.
The amphipod,Corophium acherusicum, dominated abundance in both experiments.
In the fenvalerate experiment, large trays (400 cm2) contained significantly (p<0.05) more total number of taxa (TNT) than small microcosms (144 cm2) but tray size was not significantly related to total number of organisms (TNO). When size was adjusted to a common unit
area, small trays contained significantly more TNO than large containers. Adjusted abundance of small trays was 2.5 times
that of large containers; a ratio close to that of microcosm sizes (i.e., 2.8). This result suggests that larval supply may have been inadequate to ‘aturate’ the available sediment in large containers.
Fenvalerate significantly reduced abundance in the high treatment compared to both controls and low treatment but low treatment
was not significantly different from controls. The amphipod,Corophium acherusicum, accounted for most of the decrease in abundance in response to fenvalerate. The holothruroid,Leptosynpta sp. and the polychaete,Mediomastus ambiseta, increased in abundance significantly with increased concentration of fenvalerate.
Combined effects of actual microcosm size and concentration of endosulfan were not significant for TNO or TNT. As in the fenvalerate
experiment, adjusted abundance of small microcosms was 2.6 times that of large trays which approximated the ratio of unit
area between microcosm sizes. Abundance of a few taxa responded significantly to adjusted and unadjusted unit area. Abundance
of the tunicate,Molgula manhattensis, increased significantly with increased concentration of endosulfan. Abundance was affected by sample location (e.g., interiorvs exterior cores) within microcosms. Abundance adjusted to unit area resulted in significantly greater TNO in externalvs internal cores. This has importance for sequential sub-sampling of microcosms to determine temporal dynamics.
Statistically significant effects were measured in benthic community structure associated with microcosm size; however, the
magnitude was relatively small. There appears to be no major biological reason to select one microcosm size over the other
for screening for contaminant effects. Where feasible, the small trays provide savings in sample preparation and analysis,
allow more replicates where laboratory space is limiting and generate less chemical waste. These benefits may be off-set by
less ‘artifacts’ associated with edge effects of larger microcosms and the need for a larger mass of sediment to accommodate
additional analytical requirements (e.g., thin vertical surficial samples to refine contaminant exposure at the sediment/water
interface). 相似文献
40.