FrzS acts as a polar beacon to recruit SgmX,a central activator of type IV pili during Myxococcus xanthus motility

In rod‐shaped bacteria, type IV pili (Tfp) promote twitching motility by assembling and retracting at the cell pole. In Myxococcus xanthus, a bacterium that moves in highly coordinated cell groups, Tfp are activated by a polar activator protein, SgmX. However, while it is known that the Ras‐like protein MglA is required for unipolar targeting, how SgmX accesses the cell pole to activate Tfp is unknown. Here, we demonstrate that a polar beacon protein, FrzS, recruits SgmX at the cell pole. We identified two main functional domains, including a Tfp‐activating domain and a polar‐binding domain. Within the latter, we show that the direct binding of MglA‐GTP unveils a hidden motif that binds directly to the FrzS N‐terminal response regulator (CheY). Structural analyses reveal that this binding occurs through a novel binding interface for response regulator domains. In conclusion, the findings unveil the protein interaction network leading to the spatial activation of Tfp at the cell pole. This tripartite system is at the root of complex collective behaviours in this predatory bacterium.     

Butyrate inhibits IL-1β-induced inflammatory gene expression by suppression of NF-κB activity in pancreatic beta cells

Cytokine-induced beta cell dysfunction is a hallmark of type 2 diabetes (T2D). Chronic exposure of beta cells to inflammatory cytokines affects gene expression and impairs insulin secretion. Thus, identification of anti-inflammatory factors that preserve beta cell function represents an opportunity to prevent or treat T2D. Butyrate is a gut microbial metabolite with anti-inflammatory properties for which we recently showed a role in preventing interleukin-1β (IL-1β)-induced beta cell dysfunction, but how prevention is accomplished is unclear. Here, we investigated the mechanisms by which butyrate exerts anti-inflammatory activity in beta cells. We exposed mouse islets and INS-1E cells to a low dose of IL-1β and/or butyrate and measured expression of inflammatory genes and nitric oxide (NO) production. Additionally, we explored the molecular mechanisms underlying butyrate activity by dissecting the activation of the nuclear factor-κB (NF-κB) pathway. We found that butyrate suppressed IL-1β-induced expression of inflammatory genes, such as Nos2, Cxcl1, and Ptgs2, and reduced NO production. Butyrate did not inhibit IκBα degradation nor NF-κB p65 nuclear translocation. Furthermore, butyrate did not affect binding of NF-κB p65 to target sequences in synthetic DNA but inhibited NF-κB p65 binding and RNA polymerase II recruitment to inflammatory gene promoters in the context of native DNA. We found this was concurrent with increased acetylation of NF-κB p65 and histone H4, suggesting butyrate affects NF-κB activity via inhibition of histone deacetylases. Together, our results show butyrate inhibits IL-1β-induced inflammatory gene expression and NO production through suppression of NF-κB activation and thereby possibly preserves beta cell function.     

What Is the Most Realistic Single-Compartment Model of Spike Initiation?

A large variety of neuron models are used in theoretical and computational neuroscience, and among these, single-compartment models are a popular kind. These models do not explicitly include the dendrites or the axon, and range from the Hodgkin-Huxley (HH) model to various flavors of integrate-and-fire (IF) models. The main classes of models differ in the way spikes are initiated. Which one is the most realistic? Starting with some general epistemological considerations, I show that the notion of realism comes in two dimensions: empirical content (the sort of predictions that a model can produce) and empirical accuracy (whether these predictions are correct). I then examine the realism of the main classes of single-compartment models along these two dimensions, in light of recent experimental evidence.     

Indirect Costs of Parasitism are Shaped by Variation in the Type of Immune Challenge and Food Availability

Parasites can inflict indirect fitness costs to their hosts by eliciting costly immune responses. These costs depend on the type and amount of immunostimulants presented to the host immune system but also on the amount of resources available to fuel host immune responses. Here, we investigated how the relative costs of two different types of immune challenge are modulated by variation in food availability. We injected nestling tawny owls (Strix aluco) with either 10 μg of phytohaemagglutinin (PHA) or 20 μg of lipopolysaccharide (LPS), and subsequently raised them under two different food regimes (food-restricted vs. ad libitum). After controlling for food consumption, we found that LPS-injected nestlings lost more body mass than PHA-injected ones only when food-restricted. We also found that body mass gain of owlets fed ad libitum decreased with the intensity of the skin swelling response against LPS, but not PHA. These experimental and correlative results suggest that nestling tawny owls suffered greater immune costs when treated with LPS than PHA, and that variation in the costs of two different types of immune challenge can be exacerbated under conditions of low food availability. Our study highlights the importance of taking into consideration the interplay between host immunity and nutrition in the study of indirect costs of parasitism.     

Is artificial habitat diversity a key to restoring nurseries for juvenile coastal fish? Ex situ experiments on habitat selection and survival of juvenile seabreams

Man‐made infrastructures have become ubiquitous components of coastal landscapes, leading to habitat modification that affects the abundance and diversity of marine organisms. Marine coastal fish have a complex life cycle requiring different essential habitats. One of these habitats is known as a nursery, a place where juveniles can settle in large numbers, survive, and grow to contribute to the adult population. Nurseries are mainly found in shallow, sheltered zones and are thus particularly impacted by urbanization, notably by harbors. The vertical featureless structure of docks is very unlikely to be used by juveniles, which need complex habitats to find food and shelter from predators. Recent attempts to rehabilitate the nursery function in such environments by using artificial habitats have proven efficient in increasing juvenile densities. However, nothing is known about the survival of juveniles in these habitats, preventing any conclusions on the effectiveness of this means of restoration from being drawn. Here, we set up tank experiments to test the relationship between habitat preferences and the survival rate of two species of seabream when facing stalk‐attacking combers. Habitat choice was consistent with survival results, indicating that artificial habitats might not represent unintended ecological traps for juveniles. However, the artificial habitats' effect on survival was variable between species. Therefore, our results suggest that habitat diversity might be of prime importance to sustain juveniles of different species and stress the need for the development of diverse artificial habitats to counteract the effects of seascape homogenization.     

Phylogeny and diversification of the cloud forest Morpho sulkowskyi group (Lepidoptera,Nymphalidae) in the evolving Andes

The monophyletic Morpho sulkowskyi butterfly group, endemic of Andean cloud forests, was studied to test the respective contributions of Mio‐Pliocene intense uplift period and Pleistocene glacial cycles on Andean biodiversity. We sampled nine taxa covering the whole geographical range of the group. Two mitochondrial and two nuclear genes were analysed using a Bayesian method. We established a dated phylogeny of the group using a relaxed clock method and a wide‐outgroup approach. To discriminate between two hypotheses, we used a biogeographical probabilistic method. Results suggest that the ancestor of the M. sulkowskyi group originated during the Middle–Late Miocene uplift of the Eastern Cordillera in northern Peru. Biogeographical inference suggests that the M. sulkowskyi and Morpho lympharis clades diverged in the northern Peruvian Andes. The subsequent divergences, from the Late Miocene to the Late Pliocene, should have resulted from a dispersal towards the Northern Andes (M. sulkowskyi clade), after the closure of the West Andean Portal separating the Central and Northern Andes, and a southwards dispersal along the Peruvian and Bolivian Eastern Cordilleras (M. lympharis clade). Only a few divergences occurred at the very end of the Pliocene or during the Pleistocene, a period when the more recent uplifts interfered with Pleistocene glacial cycles.     

Filling the gap: Micro-C accesses the nucleosomal fiber at 100–1000 bp resolution

The fine three-dimensional structure of the nucleosomal fiber has remained elusive to genome-wide chromosome conformation capture (3C) approaches. A new study mapping contacts at the single nucleosome level (Micro-C) reveals topological interacting domains along budding yeast chromosomes. These domains encompass one to five consecutive genes and are delimited by highly active promoters.     

A baited underwater video technique to assess shallow-water Mediterranean fish assemblages: Methodological evaluation

A baited underwater video (BUV) system for the study of reef-associated fish populations on shallow (10-20 m) rocky habitats in the western Mediterranean was assessed at four locations in Spain and two in France. We describe the apparatus and optimal deployment times for video sampling. Different species had different response times to the bait, with four response groups identified. Examination of species accumulation curves and fish abundance estimates over time revealed that a period of approximately 20 min deployment was sufficient to capture most species on video. The technique sampled a wide variety of species, with 51 species belonging to 33 families recorded. Nine species of fish appeared regularly at the bait in relatively high numbers, and consist of six carnivores (Serranus cabrilla, Serranus scriba, Coris julis, Diplodus annularis, Diplodus vulgaris, Thalassoma pavo), two planktivores (Chromis chromis, Boops boops) and one omnivore (Oblada melanura). However, abundance estimates for other species were generally very low (mean < 1 per location). Comparison of results from BUV with those obtained by Underwater Visual Census (UVC) at the same locations suggests that although BUV estimates species richness reliably, UVC is the more suitable technique for estimating the abundance of shallow-water reef fish in the Mediterranean. BUV improvements are suggested to optimise its use in deeper waters where UVC using scuba is inoperable.