A trade-based method for modelling supply markets in consequential LCA exemplified with Portland cement and bananas

Purpose

This study proposes a method based on the analysis of trade networks over time for modelling the marginal supply of products in consequential life cycle assessment (LCA). It aims at increasing the geographical granularity of markets, accuracy of transport distances and modes and material losses during transit by creating country-specific markets, instead of region-based supply-origin markets as currently proposed by ecoinvent. It leads to a better consideration of the environmental weight of trade following a change in demand on a local market and may serve as an inspirational basis for future releases of consequential life cycle inventory (LCI) databases.

Methods

The method uses ecoinvent v.3.3 as a support LCI database and two distinct traded products: bananas and grey Portland cement. Each country involved in the trade of a said product has a corresponding market created in the LCI database. The behavior of market to a marginal change in internal demand is modelled after its marginal trading preferences: it can either affect local production, imports, exports or a mix of the first two. Markets are linked to one another based on the linear regression analysis of their historical trade relations. The inventories that follow an increase in demand of 1000 kg of bananas and grey Portland cement are calculated for each market involved in their trade and are environmentally characterized and compared to the generic region-based market datasets provided by ecoinvent to assess the gains in accuracy through a higher geographical granularity. Furthermore, the characterized inventories of the markets for bananas are compared to a parallel scenario where transport distances are kept to a minimum using the shortest path method. It isolates the environmental burden associated to the utility maximization of the demand.

Results and discussion

When comparing the characterized impacts of country-specific markets with the generic ecoinvent market datasets, disparities in results appear. They highlight the importance of transport induced by demand displacement and losses of material during transport, both being the consequences of the extent a given market decides to be supplied directly from producing markets at the margin. These are aspects that may go unaccounted for when using generic regional markets. Second, optimizing transport distances for each market decreases the environmental impacts for most categories by more than 70%.

Conclusions

This study shows there is a need for modelling and understanding market relations to more accurately define the role of trade, supply chain efficiency and import policies in LCA.

     

Diverse phenotypic and genetic responses to short‐term selection in evolving Escherichia coli populations

Beneficial mutations fuel adaptation by altering phenotypes that enhance the fit of organisms to their environment. However, the phenotypic effects of mutations often depend on ecological context, making the distribution of effects across multiple environments essential to understanding the true nature of beneficial mutations. Studies that address both the genetic basis and ecological consequences of adaptive mutations remain rare. Here, we characterize the direct and pleiotropic fitness effects of a collection of 21 first‐step beneficial mutants derived from naïve and adapted genotypes used in a long‐term experimental evolution of Escherichia coli. Whole‐genome sequencing was able to identify the majority of beneficial mutations. In contrast to previous studies, we find diverse fitness effects of mutations selected in a simple environment and few cases of genetic parallelism. The pleiotropic effects of these mutations were predominantly positive but some mutants were highly antagonistic in alternative environments. Further, the fitness effects of mutations derived from the adapted genotypes were dramatically reduced in nearly all environments. These findings suggest that many beneficial variants are accessible from a single point on the fitness landscape, and the fixation of alternative beneficial mutations may have dramatic consequences for niche breadth reduction via metabolic erosion.     

Identification of grapevine aquaporins and expression analysis in developing berries

Aquaporins are membrane water channels that play critical roles in controlling the water content of cells and tissues. In this work, nine full-length cDNAs encoding putative aquaporins were isolated from grape berry cDNA libraries. A phylogenetic analysis conducted with 28 aquaporin genes identified in the grapevine genome and previously characterized aquaporins from Arabidopsis indicates that three cDNAs encode putative tonoplast aquaporins (TIPs) whereas six cDNAs belong to the plasma membrane aquaporin subfamily (PIPs). Specific probes designed on the 3' untranslated regions of each cDNA were used for the preparation of cDNA macroarray filters and in situ hybridization experiments. Macroarray data indicate that expression levels of most TIP and PIP genes depend on grape berry developmental stages and point out to a global decrease of aquaporin gene expression during berry ripening. In young berries, high expression of aquaporin genes was preferentially observed in dividing and elongating cells and in cells involved in water and solutes transport. Taken together, the data provided in this paper indicate that aquaporins are implicated in various physiological aspects of grape berry development.     

Proteomic and phosphoproteomic analyses of yeast reveal the global cellular response to sphingolipid depletion

Sphingolipids are essential components of eukaryotic cells with important functions in membrane biology and cellular signaling. Their levels are tightly controlled and coordinated with the abundance of other membrane lipids. How sphingolipid homeostasis is achieved is not yet well understood. Studies performed primarily in yeast showed that the phosphorylation states of several enzymes and regulators of sphingolipid synthesis are important, although a global understanding for such regulation is lacking. Here, we used high‐resolution MS‐based proteomics and phosphoproteomics to analyze the cellular response to sphingolipid synthesis inhibition. Our dataset reveals that changes in protein phosphorylation, rather than protein abundance, dominate the response to blocking sphingolipid synthesis. We identified Ypk signaling as a pathway likely to be activated under these conditions, and we identified potential Ypk1 target proteins. Our data provide a rich resource for on‐going mechanistic studies of key elements of the cellular response to the depletion of sphingolipid levels and the maintenance of sphingolipid homeostasis. All MS data have been deposited in the ProteomeXchange with identifier PXD003854 ( http://proteomecentral.proteomexchange.org/dataset/PXD003854 ).     

Multilayered structure of tension wood cell walls in Salicaceae sensu lato and its taxonomic significance

Salicaceae have been enlarged to include a majority of the species formerly placed in the polyphyletic tropical Flacourtiaceae. Several studies have reported a peculiar and infrequently formed multilayered structure of tension wood in four of the tropical genera. Tension wood is a tissue produced by trees to restore their vertical orientation and most studies have focused on trees developing tension wood by means of cellulose‐rich, gelatinous fibres, as in Populus and Salix (Salicaceae s.s.). This study aims to determine if the multilayered structure of tension wood is an anatomical characteristic common in other Salicaceae and, if so, how its distribution correlates to phylogenetic relationships. Therefore, we studied the tension wood of 14 genera of Salicaceae and two genera of Achariaceae, one genus of Goupiaceae and one genus of Lacistemataceae, families closely related to Salicaceae or formerly placed in Flacourtiaceae. Opposite wood and tension wood were compared with light microscopy and three‐dimensional laser scanning confocal microscopy. The results indicate that a multilayered structure of tension wood is common in the family except in Salix, Populus and one of their closest relatives, Idesia polycarpa. We suggest that tension wood may be a useful anatomical character in understanding phylogenetic relationships in Salicaceae. Further investigation is still needed on the tension wood of several other putatively close relatives of Salix and Populus, in particular Bennettiodendron, Macrohasseltia and Itoa.     

Accounting for tree spatial distribution in a comparison of plot sizes and shapes in dense forest and woodland in Benin (West Africa)

The study examined simultaneously, the effect of tree spatial distribution, inventory plot size and shape on the estimation error of basal area in two contrasting environments. Twenty and fifteen square plots of 1 ha each (divided into 100 quadrats of 0.01 ha) were randomly set in dense forest and woodland, respectively. Thirteen subplots of various shapes and sizes were obtained from the association of adjacent quadrats. Estimation error was calculated using residual mean square of one‐way ANOVA, based on replications of subplot within 1 ha plots. Tree spatial distribution was measured using Green index. Weighted linear regression and mixed effect models were applied to Box & Cox transformed data. In general, the estimation error of basal area decreased with increase in subplot size. However, the effects of tree spatial distribution and plot shape varied with the vegetation type. Where trees tended to be aggregated, estimation error increased with degree of aggregation, and rectangular plots of 0.24 ha produced an acceptable precision. It was concluded that 0.24 ha rectangular plots can be used in tropical environments where the target parameters vary constantly according to one direction, while square plots of the same size are optimal for reliable analysis in case of randomness.     

The Brain Network of Naming: A Lesson from Primary Progressive Aphasia

Objective

Word finding depends on the processing of semantic and lexical information, and it involves an intermediate level for mapping semantic-to-lexical information which also subserves lexical-to-semantic mapping during word comprehension. However, the brain regions implementing these components are still controversial and have not been clarified via a comprehensive lesion model encompassing the whole range of language-related cortices. Primary progressive aphasia (PPA), for which anomia is thought to be the most common sign, provides such a model, but the exploration of cortical areas impacting naming in its three main variants and the underlying processing mechanisms is still lacking.

Methods

We addressed this double issue, related to language structure and PPA, with thirty patients (11 semantic, 12 logopenic, 7 agrammatic variant) using a picture-naming task and voxel-based morphometry for anatomo-functional correlation. First, we analyzed correlations for each of the three variants to identify the regions impacting naming in PPA and to disentangle the core regions of word finding. We then combined the three variants and correlation analyses for naming (semantic-to-lexical mapping) and single-word comprehension (lexical-to-semantic mapping), predicting an overlap zone corresponding to a bidirectional lexical-semantic hub.

Results and Conclusions

Our results showed that superior portions of the left temporal pole and left posterior temporal cortices impact semantic and lexical naming mechanisms in semantic and logopenic PPA, respectively. In agrammatic PPA naming deficits were rare, and did not correlate with any cortical region. Combined analyses revealed a cortical overlap zone in superior/middle mid-temporal cortices, distinct from the two former regions, impacting bidirectional binding of lexical and semantic information. Altogether, our findings indicate that lexical/semantic word processing depends on an anterior-posterior axis within lateral-temporal cortices, including an anatomically intermediate hub dedicated to lexical-semantic integration. Within this axis our data reveal the underpinnings of anomia in the PPA variants, which is of relevance for both diagnosis and future therapy strategies.     

Screening the low molecular weight fraction of human serum using ATR‐IR spectroscopy

Vibrational spectroscopic techniques can detect small variations in molecular content, linked with disease, showing promise for screening and early diagnosis. Biological fluids, particularly blood serum, are potentially valuable for diagnosis purposes. The so‐called Low Molecular Weight Fraction (LMWF) contains the associated peptidome and metabolome and has been identified as potentially the most relevant molecular population for disease‐associated biomarker research. Although vibrational spectroscopy can deliver a specific chemical fingerprint of the samples, the High Molecular Weight Fraction (HMWF), composed of the most abundant serum proteins, strongly dominates the response and ultimately makes the detection of minor spectral variations a challenging task. Spectroscopic detection of potential serum biomarkers present at relatively low concentrations can be improved using pre‐analytical depletion of the HMWF. In the present study, human serum fractionation by centrifugal filtration was used prior to analysis by Attenuated Total Reflection infrared spectroscopy. Using a model sample based on glycine spiked serum, it is demonstrated that the screening of the LMWF can be applied to quantify blinded concentrations up to 50 times lower. Moreover, the approach is easily transferable to different bodily fluids which would support the development of more efficient and suitable clinical protocols exploring vibrational spectroscopy based ex‐vivo diagnostic tools.

Revealing serum LMWF for spectral serological diagnostic applications.