Plant species loss from European semi‐natural grasslands following nutrient enrichment – is it nitrogen or is it phosphorus?

Aim Although many studies support the prevailing paradigm of nitrogen (N)‐driven biodiversity loss, some have argued that phosphorus (P) may be the main culprit. This questions the generality of the global threat through N enrichment. The major objective here was to quantify the relative importance of soil N and P in explaining patterns of plant species richness, under different levels of N and P limitation. Location North‐western Europe. Methods We collected soil, productivity and plant species data from 132 semi‐natural grasslands located along a gradient of nutrient availability and atmospheric N deposition. We used linear mixed models to investigate the relation between soil nutrients, acidity, limitation and productivity on one side, and indices for plant species richness on the other. Results Mixed models explained between 38 and 50% of the total variation in species numbers, forbs and endangered species. Soil P was significantly negatively related to total species number, forbs and endangered species. Soil N was only significantly negatively related to number of forbs and endangered species. Compared with soil P, the explained variation attributed to soil N was between five‐ and twenty‐fold lower. P‐limited grasslands exhibited higher species richness, numbers of forbs and endangered species. Species richness and number of forbs decreased with lower soil acidity. N deposition was negatively related to the number of forbs and endangered species, as well as to soil acidity. Productivity was weakly positively related to soil P and negatively to species and forb numbers. We found no interaction factors between the explanatory variables. Main conclusions P enrichment can present a greater threat to biodiversity than N enrichment in at least some terrestrial ecosystems. However, as N‐ and P‐driven species loss appeared independent, our results suggest that simultaneously reducing N and P inputs is a prerequisite for maintaining maximum plant diversity.     

Plastid phylogenomics and molecular evolution of Thismiaceae (Dioscoreales)

Premise

Species in Thismiaceae can no longer photosynthesize and instead obtain carbon from soil fungi. Here we infer Thismiaceae phylogeny using plastid genome data and characterize the molecular evolution of this genome.

Methods

We assembled five Thismiaceae plastid genomes from genome skimming data, adding to previously published data for phylogenomic inference. We investigated plastid-genome structural changes, considering locally colinear blocks (LCBs). We also characterized possible shifts in selection pressure in retained genes by considering changes in the ratio of nonsynonymous to synonymous changes (ω).

Results

Thismiaceae experienced two major pulses of gene loss around the early diversification of the family, with subsequent scattered gene losses across descendent lineages. In addition to massive size reduction, Thismiaceae plastid genomes experienced occasional inversions, and there were likely two independent losses of the plastid inverted repeat (IR) region. Retained plastid genes remain under generally strong purifying selection (ω << 1), with significant and sporadic weakening or strengthening in several instances. The bifunctional trnE-UUC gene of Thismia huangii may retain a secondary role in heme biosynthesis, despite a probable loss of functionality in protein translation. Several cis-spliced group IIA introns have been retained, despite the loss of the plastid intron maturase, matK.

Conclusions

We infer that most gene losses in Thismiaceae occurred early and rapidly, following the initial loss of photosynthesis in its stem lineage. As a species-rich, fully mycoheterotrophic lineage, Thismiaceae provide a model system for uncovering the unique and divergent ways in which plastid genomes evolve in heterotrophic plants.     

The dragonfly delusion: why it is essential to sample exuviae to avoid biased surveys

Odonate populations and species numbers are declining globally. Successful conservation requires sound assessments of both odonate distributions and habitat requirements. Odonates have aquatic (larval) and terrestrial (adult) stages, but most surveys that are used to inform conservation managers are undertaken of the adult stage. This study investigates whether this bias towards adult records in odonate recording is misinterpreting the environmental quality of sites. The habitat focus is farmland ponds, a key feature of agricultural landscapes. We tested whether or not, adult, larval and exuvial surveys lead to similar conclusions on species richness and hence on pond quality. Results showed that pond surveys based upon larvae and exuviae are equally suitable for the reliable assessment of presence/absence of odonates, but that adult surveys are not interchangeable with surveys of larvae/exuviae. Larvae were also found at ponds with no emerging individuals due to changes in habitat quality, therefore presence of exuviae remains the only proof of life-cycle completion at a site. Ovipositing females were recorded at all ponds where exuviae were totally absent hence adult surveys over-estimate pond quality and low-quality ponds are functioning as ecological traps. Highly mobile and generalist species were recorded at more locations than other species. Adult surveys also bias recording towards genera, species and populations with non-territorial mate-location strategies. Odonate biodiversity monitoring would benefit from applying the best survey method (exuviae) to avoid wasting valuable financial resources while providing unbiased data, necessary to achieve conservation objectives.