The N-Terminal Sequence of Prion Protein Consists an Epitope Specific to the Abnormal Isoform of Prion Protein (PrPSc)

The conformation of abnormal prion protein (PrP^Sc) differs from that of cellular prion protein (PrP^C), but the precise characteristics of PrP^Sc remain to be elucidated. To clarify the properties of native PrP^Sc, we attempted to generate novel PrP^Sc-specific monoclonal antibodies (mAbs) by immunizing PrP-deficient mice with intact PrP^Sc purified from bovine spongiform encephalopathy (BSE)-affected mice. The generated mAbs 6A12 and 8D5 selectivity precipitated PrP^Sc from the brains of prion-affected mice, sheep, and cattle, but did not precipitate PrP^C from the brains of healthy animals. In histopathological analysis, mAbs 6A12 and 8D5 strongly reacted with prion-affected mouse brains but not with unaffected mouse brains without antigen retrieval. Epitope analysis revealed that mAbs 8D5 and 6A12 recognized the PrP subregions between amino acids 31–39 and 41–47, respectively. This indicates that a PrP^Sc-specific epitope exists in the N-terminal region of PrP^Sc, and mAbs 6A12 and 8D5 are powerful tools with which to detect native and intact PrP^Sc. We found that the ratio of proteinase K (PK)-sensitive PrP^Sc to PK-resistant PrP^Sc was constant throughout the disease time course.     

Enhanced eicosapentaenoic acid production by Navicula saprophila

Changes in the eicosapentaenoic acid (EPA) content of Navicula saprophila grown photoautotrophically and mixotrophically with the addition of acetate were examined in terms of their growth progress. Among four conditions, mixotrophic conditions in CO₂-enriched (about 2%) atmosphere gave a maximum EPA content. As sodium acetate was added to the growth medium, the EPA content increased and reached a maximum value of 34.6 mg EPA g^-1 biomass in the early stationary growth phase. In contrast, under photoautotrophic conditions in CO₂ enriched atmosphere, the EPA content decreased during this phase. EPA was localized as the fatty acid esters of monogalactosyl diacylglycerol, phosphatidylethanolamine and phosphatidylcholine, and the addition of acetate strongly enhanced production of the PC ester of EPA. This revised version was published online in June 2006 with corrections to the Cover Date.     

Gene expression regulation and domain function of hematopoietic GATA factors

The hierarchical gene regulatory network in hematopoiesis is highly complex, making elucidation of the processes of specification and differentiation of hematopoietic cells a challenging task. Recent discoveries have divulged the GATA factors as central to the genetic control of hematopoiesis. In particular, hematopoietic development is subject to extensive and precise regulation of GATA-1 and GATA-2 at the molecular level. We wish to emphasize the regulatory relationships between GATA-1 and GATA-2 implicated in cell development. An advanced experimental genetic approach has provided evidence that abnormalities in this network may result in a variety of blood disorders. The most striking new finding is the novel pathogenesis arising from GATA-1 dysfunction that leads to leukemia.     

Random sequencing of cDNA libraries reveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)

Large scale sequencing of randomly selected cDNA clones was carried out to investigate the feasibility of this method for isolating plant genes. cDNA libraries were made using mRNA prepared from suspension-cultured cells of rice (Oryza sativa L.). Partial nucleotide sequences of 830 individual cDNA clones have been determined and compared with the GenBank database. Approximately 8% of the cDNA clones could be identified as particular genes. This method provides the opportunity to isolate large numbers of plant genes.     

Phytochrome elicits the cryptic red-light signal which results in amplification of anthocyanin biosynthesis in sorghum

Anthocyanin synthesis in Sorghum bicolor Moench induced by a low-fluence response of phytochrome (phy) is multiplicatively amplified by a cryptic red-light signal (CRS) produced by red light (R). The photoreceptor for CRS and its features in CRS production were studied. (i) An action spectrum determined with a 200-s light pulse of wavelengths from 347 to 693 nm had peaks at 657 and 378 nm. (ii) The CRS-producing effect of R, even as short a pulse as 20 s, was neither suppressed by an immediately subsequent far-red light (FR) pulse nor increased by placing a dark interval of 180 s between R and FR; simultaneous FR, however, suppressed the R action in accordance with the resulting ratios of the FR-absorbing form (Pfr) to total phy. (iii) The effect of R increased with increasing fluence rate to plateau at the same fluence rate regardless of the pulse length, but the level of this plateau depended on the pulse length. (iv) The effect of R increased with increasing pulse length when compared at the same fluence, whether saturating or unsaturating; thus, no reciprocity law holds. These results indicate that the photoreceptor for CRS production is a phy, Pfr being active, which presumably shows very fast dark reversion to the R-absorbing form without absorbing FR. The possible CRS-production mechanism of the phy and its significance in the so-called R high-irradiance response of phy are discussed. Received: 26 June 1998 / Accepted: 27 July 1998     

Characterization of the intramolecular transfer state of marine carotenoid fucoxanthin by femtosecond pump–probe spectroscopy

Fucoxanthin, containing a carbonyl group in conjugation with its polyene backbone, is a naturally occurring pigment in marine organisms and is essential to the photosynthetic light-harvesting function in brown alga and diatom. Fucoxanthin exhibits optical characteristics attributed to an intramolecular charge transfer (ICT) state that arises in polar environments due to the presence of the carbonyl group. In this study, we report the spectroscopic properties of fucoxanthin in methanol (polar and protic solvent) observed by femtosecond pump–probe measurements in the near-infrared region, where transient absorption associated with the optically allowed S₂ (1¹B _u ⁺ ) state and stimulated emission from the strongly coupled S₁/ICT state were observed following one-photon excitation to the S₂ state. The results showed that the amplitude of the stimulated emission of the S₁/ICT state increased with decreasing excitation energy, demonstrating that the fucoxanthin form associated with the lower energy of the steady-state absorption exhibits stronger ICT character.     

Localization of Proteins to Different Layers and Regions of Bacillus subtilis Spore Coats

Bacterial spores are encased in a multilayered proteinaceous shell known as the coat. In Bacillus subtilis, over 50 proteins are involved in spore coat assembly but the locations of these proteins in the spore coat are poorly understood. Here, we describe methods to estimate the positions of protein fusions to fluorescent proteins in the spore coat by using fluorescence microscopy. Our investigation suggested that CotD, CotF, CotT, GerQ, YaaH, YeeK, YmaG, YsnD, and YxeE are present in the inner coat and that CotA, CotB, CotC, and YtxO reside in the outer coat. In addition, CotZ and CgeA appeared in the outermost layer of the spore coat and were more abundant at the mother cell proximal pole of the forespore, whereas CotA and CotC were more abundant at the mother cell distal pole of the forespore. These polar localizations were observed both in sporangia prior to the release of the forespore from the mother cell and in mature spores after release. Moreover, CotB was observed at the middle of the spore as a ring- or spiral-like structure. Formation of this structure required cotG expression. Thus, we conclude not only that the spore coat is a multilayered assembly but also that it exhibits uneven spatial distribution of particular proteins.Proper localization and assembly of proteins in cells and subcellular structures are essential features of living organisms. Complex protein assemblies, including ribosomes, flagella, and the cytokinetic machinery, play important roles in bacteria (26, 27, 40). Studying how these complex structures are formed is a fundamental theme in molecular biology. In this work, we developed a method to analyze one of the most complex bacterial protein assemblies: the spore coat of Bacillus subtilis.Sporulation of B. subtilis is initiated in response to nutrient limitation, and it involves a highly ordered program of gene expression and morphological change (33, 42). The first morphological change of sporulation is the appearance of an asymmetrically positioned septum that divides the cell into a larger mother cell and a smaller forespore. Next, the mother cell membrane migrates around the forespore membrane during a phagocytosis-like process called engulfment. The completion of engulfment involves fusion of the mother cell membrane to pinch off the forespore within the mother cell. Compartment-specific gene expression brings about maturation of the spore and its release upon lysis of the mother cell (reviewed in reference 19). Mature spores remain viable during long periods of starvation and are resistant to heat, toxic chemicals, lytic enzymes, and other factors capable of damaging vegetative cells (30). Spores germinate and resume growth when nutrients become available (32).The outer portions of Bacillus spores consist of a cortex, a spore coat layer, and in some cases, an exosporium. The cortex, a thick layer of peptidoglycan, is deposited between the inner and the outer membranes of the forespore, and it is responsible for maintaining the highly dehydrated state of the core, thereby contributing to the extreme dormancy and heat resistance of spores. Spore coat assembly involves the deposition of at least 50 protein species (12, 21, 24) into two major layers: an electron-dense outer layer, called the outer coat, and a less electron-dense inner layer with a lamellar appearance, called the inner coat (50). These layers provide a protective barrier against bactericidal enzymes and chemicals, such as lysozyme and organic solvents (30). Although disruption of any one gene encoding a spore coat protein typically has little or no effect on spore resistance, morphology, or germination, a few proteins, referred to as morphogenetic proteins, play central roles in the assembly of the spore coat (7, 10, 13). One of the morphogenetic proteins, CotE, is located between the inner and outer coats and directs the assembly of most or all of the outer coat proteins and also a few of the inner coat proteins (2, 9, 17, 25, 52). The locations of CotE, CotS, and SpoIVA in the spore coat were determined previously by immunoelectron microscopy (9, 43). CotA, CotB, CotC, and CotG were shown to be externally exposed on the surface of the spore by single-molecule recognition force spectroscopy or antibody accessibility (15, 18, 45, 28). However, the positions of most of the spore coat proteins in the coat have not been determined experimentally, although provisional assignments were made based largely on the control of assembly into the coat by CotE (17). In this study, we developed methods to estimate the positions of proteins in the spore coat layers by using fluorescence microscopy analysis of coat protein-fluorescent protein fusions, with resolution that allowed us to distinguish between the inner and outer coats. In addition, we discovered an asymmetric spatial distribution of four spore coat proteins and a ring- or spiral-like structure of CotB. These observations suggest that spore coat assembly is more intricate than previously appreciated.     

Neurotrophic activity of honokiol on the cultures of fetal rat cortical neurons

Honokiol, a main biphenyl neolignan of the traditional crude medicine, Magnoliae cortex, was found to show neurotrophic activity on the cultures of rat cortical neurons at concentration from 0.1 to 10 microM. In the cortical neurons cultured in serum-free medium supplemented with B27, honokiol could promote neurite outgrowth. In addition, the survival and growth of neurons were significantly enhanced by adding honokiol to the primary cultures in serum-free medium supplemented with N2. Its neurotrophic activity was comparable to 40 ng mL(-1) of bFGF at concentration of 10 microM.     

Regulation by Light and Darkness of Melatonin Secretion from the Superfused Masu Salmon (Oncorhynchus masou) Pineal Organ

The pineal organ of masu salmon Oncorhynchus masou was maintained in a flow-through, whole-organ culture (superfusion) system and melatonin secretory profiles were determined at 15 °C under light-dark cycles of 12:12 h (LD 12:12) or the same in combination with constant darkness (DD) for 72 h. Under LD 12:12, superfused pineal organs showed a rhythmic melatonin secretion with high and low rates during the dark phase and the light phase, respectively. When the pineal organs maintained under LD 12:12 for 24 h were transferred to DD, melatonin secretion was consistently activated and no endogenous component was evident. When the pineal organs maintained under DD for 48 h were transferred to LD 12:12, melatonin secretion was reduced only during the light phase. These results indicate that melatonin secretion from the superfused pineal organ of masu salmon is regulated not by an intra-pineal circadian oscillator but by the environmental LD cycles, via local photoreceptors.