Strategies for evaluating the environment-public health interaction of long-term latency disease: the quandary of the inconclusive case-control study

Environmental links to disease are difficult to uncover because environmental exposures are variable in time and space, contaminants occur in complex mixtures, and many diseases have a long time delay between exposure and onset. Furthermore, individuals in a population have different activity patterns (e.g., hobbies, jobs, and interests), and different genetic susceptibilities to disease. As such, there are many potential confounding factors to obscure the reasons that one individual gets sick and another remains healthy. An important method for deducing environmental associations with disease outbreak is the retrospective case-control study wherein the affected and control subject cohorts are studied to see what is different about their previous exposure history. Despite success with infectious diseases (e.g., food poisoning, and flu), case-control studies of cancer clusters rarely have an unambiguous outcome. This is attributed to the complexity of disease progression and the long-term latency between exposure and disease onset. In this article, we consider strategies for investigating cancer clusters and make some observations for improving statistical power through broader non-parametric approaches wherein sub-populations (i.e., whole towns), rather than individuals, are treated as the cases and controls, and the associated cancer rates are treated as the dependent variable. We subsequently present some ecological data for tungsten and cobalt from studies by University of Arizona researchers who document elevated levels of tungsten and cobalt in Fallon, NV. These results serve as candidates for future hybrid ecologic case-control investigations of childhood leukemia clusters.     

The relative importance of allelopathy in interference: the effects of an invasive weed on a native bunchgrass

The relative importance of allelopathy and resource competition in plant-plant interactions has been vigorously debated but seldom tested. We used activated carbon to manipulate the effects of root exudates of Centaurea maculosa, a noxious weed in much of western North America, on root elongation rates and growth of the native bunchgrass Festuca idahoensis in order to investigate the relative importance of allelopathy in the total interference of Centaurea. In root observation chambers, Festuca root elongation rates decreased to ᅢ% of the control, beginning 4 days before contacting Centaurea roots in silica sand. However, when activated carbon, which has a high affinity for adsorbing to organic compounds, was added to the sand the effects of Centaurea roots on Festuca root elongation were reduced. In other experiments, Festuca plants were 50% smaller when grown with Centaurea than with conspecifics in pure silica sand. However, Festuca grown with Centaurea in mixtures of sand and activated carbon were 85% larger than Festuca grown with Centaurea in silica sand without carbon. These results suggest that allelopathy accounts for a substantial proportion of the total interference of Centaurea on Festuca, shifting the balance of competition in favor of Centaurea. However, Centaurea outperformed Festuca even in the presence of activated carbon, demonstrating the importance of the combined roles of resource competition and allelopathy.     

G6PD Deficiency at Sumba in Eastern Indonesia Is Prevalent,Diverse and Severe: Implications for Primaquine Therapy against Relapsing Vivax Malaria

Safe treatment of Plasmodium vivax requires diagnosis of both the infection and status of erythrocytic glucose-6-phosphate dehydrogenase (G6PD) activity because hypnozoitocidal therapy against relapse requires primaquine, which causes a mild to severe acute hemolytic anemia in G6PD deficient patients. Many national malaria control programs recommend primaquine therapy without G6PD screening but with monitoring due to a broad lack of G6PD deficiency screening capacity. The degree of risk in doing so hinges upon the level of residual G6PD activity among the variants present in any given area. We conducted studies on Sumba Island in eastern Indonesia in order to assess the potential threat posed by primaquine therapy without G6PD screening. We sampled 2,033 residents of three separate districts in western Sumba for quantitative G6PD activity and 104 (5.1%) were phenotypically deficient (<4.6U/gHb; median normal 10U/gHb). The villages were in two distinct ecosystems, coastal and inland. A positive correlation occurred between the prevalence of malaria and G6PD deficiency: 5.9% coastal versus inland 0.2% for malaria (P<0.001), and 6.7% and 3.1% for G6PD deficiency (P<0.001) at coastal and inland sites, respectively. The dominant genotypes of G6PD deficiency were Vanua Lava, Viangchan, and Chatham, accounting for 98.5% of the 70 samples genotyped. Subjects expressing the dominant genotypes all had less than 10% of normal enzyme activities and were thus considered severe variants. Blind administration of anti-relapse primaquine therapy at Sumba would likely impose risk of serious harm.     

CycleTrak: a novel system for the semi-automated analysis of cell cycle dynamics

Cell proliferation is crucial to tissue growth and form during embryogenesis, yet dynamic tracking of cell cycle progression and cell position presents a challenging roadblock. We have developed a fluorescent cell cycle indicator and single cell analysis method, called CycleTrak, which allows for better spatiotemporal resolution and quantification of cell cycle phase and cell position than current methods. Our method was developed on the basis of the existing Fucci method. CycleTrak uses a single lentiviral vector that integrates mKO2-hCdt1 (30/120), and a nuclear-localized eGFP reporter. The single vector and nuclear localized fluorescence signals simplify delivery into cells and allow for rapid, automated cell tracking and cell cycle phase readout in single and subpopulations of cells. We validated CycleTrak performance in metastatic melanoma cells and identified novel cell cycle dynamics in vitro and in vivo after transplantation and 3D confocal time-lapse imaging in a living chick embryo.     

Organ specificity and transcriptional control of metabolic routes revealed by expression QTL profiling of source-sink tissues in a segregating potato population

Background  

With the completion of genome sequences belonging to some of the major crop plants, new challenges arise to utilize this data for crop improvement and increased food security. The field of genetical genomics has the potential to identify genes displaying heritable differential expression associated to important phenotypic traits. Here we describe the identification of expression QTLs (eQTLs) in two different potato tissues of a segregating potato population and query the potato genome sequence to differentiate between cis- and trans-acting eQTLs in relation to gene subfunctionalization.     

Root herbivores,pathogenic fungi,and competition between Centaurea maculosa and Festuca idahoensis

We used a common garden experiment to evaluate the isolated and combined effects of a biocontrol agent, the insect (Agapeta zoegana, Lepidoptera), and a native North American fungal pathogen (Sclerotinia sclerotiorum) on competition between the noxious weed Centaurea maculosa and the native Festuca idahoensis. In 0.5-m² plots with 24 plants per plot, competition between Centaurea and Festuca was highly asymmetrical, with Centaurea strongly reducing the final biomass and reproduction of Festuca, and Festuca having no effect, or possibly a positive effect, on Centaurea. The direct effects of the biological control agents differed entirely. All Centaurea individuals died in plots receiving Sclerotinia, but Agapeta did not significantly reduce the growth of Centaurea, and apparently stimulated a compensatory reproductive response in the weed. Individual Centaurea plants that had been damaged by Agapeta produced more flowerheads, and the number of Centaurea plants with Agapeta root damage in a plot was positively correlated with total Centaurea biomass. These differences in the direct effects of the consumers were reflected in their indirect effects. In plots where Sclerotinia killed Centaurea (strong direct effects) Festuca growth and reproduction was equal to that in Festuca plots without Centaurea and the reproductive output of Festuca increased substantially (strong indirect effects). However, in the absence of Sclerotinia, the application of Agapeta did not significantly decrease Centaurea biomass (weak direct effects) and actually stimulated small, but significant decreases in Festuca reproduction and trends towards lower Festuca biomass (weak and opposite indirect effects –Agapeta does not eat Festuca). If the direct effects of biocontrol agents on Centaurea are weak, as suggested by our results, natives are unlikely to be released from the competitive effects of Centaurea, and natives may suffer from Centaurea's compensatory response to herbivory. This revised version was published online in August 2006 with corrections to the Cover Date.     

Electrophoresis of colloidal biological particles

Microscope electrophoresis was used to measure the electrophoretic mobility of polystyrene latex particles and bacterial, and mammalian tissue cells. The submicroscopic hydrophilic colloids (gelatin, serum albumin, and staphylococcal enterotoxin B) were adsorbed on latex carrier particles to determine their electrophoretic mobility and the effect of concentration, pH, electrolyte addition, and buffer ionic strength. Mobility curves as a function of pH were established for latex particles at 1 ppm concentration indicating an isoelectric point (IEP) at pH 3.6. The IEP for Escherichia coli B cells was measured at pH 2.8, Serratia marcescens at pH 2.6, Bacillus subtilis var. niger at pH 2.9, and L strain mouse fibroblast cells at pH 4.4. Using an adsorption technique, isoelectric points were measured for proteins: gelatin (acid form) at pH 9.4, serum albumin at pH 4.9, and staphylococcal enterotoxin B at pH 6.3. Procefures for examining electrophoretic characteristics of microscopic and submicroscopic biological particles are described in order to standardize procedures and to generate results applicable to an understanding of parameters influencing concentration and purification of colloidal biological particles.