Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

Despite their importance to host health and development, the communities of microorganisms associated with humans and other animals are characterized by a large degree of unexplained variation across individual hosts. The processes that drive such inter-individual variation are not well understood. To address this, we surveyed the microbial communities associated with the intestine of the zebrafish, Danio rerio, over developmental time. We compared our observations of community composition and distribution across hosts with that predicted by a neutral assembly model, which assumes that community assembly is driven solely by chance and dispersal. We found that as hosts develop from larvae to adults, the fit of the model to observed microbial distributions decreases, suggesting that the relative importance of non-neutral processes, such as microbe-microbe interactions, active dispersal, or selection by the host, increases as hosts mature. We also observed that taxa which depart in their distributions from the neutral prediction form ecologically distinct sub-groups, which are phylogenetically clustered with respect to the full metacommunity. These results demonstrate that neutral processes are sufficient to generate substantial variation in microbiota composition across individual hosts, and suggest that potentially unique or important taxa may be identified by their divergence from neutral distributions.     

Developing indices of relative abundance for monitoring cave and ground wētā (Orthoptera) in southern beech forest,New Zealand

We sampled populations of forest-floor dwelling cave and ground wētā using footprint tracking tunnels and spotlight transect counts in southern beech forest, New Zealand. Samples were compared to estimates of wētā density based on mark–recapture estimates from 25?m² enclosures. Both activity indices captured variability in cave wētā in time and space, were strongly correlated with each other, and have the potential for monitoring cave wētā activity levels. Comparisons between indices and cave wētā density estimates were equivocal, as recapture rates were too low to calculate high-resolution density estimates. We also found that cave wētā counts had a curved relationship increasing with temperature, and a negative relationship with increasing shrub and woody debris cover. Based on these preliminary results, tracking tunnels could be a viable method of monitoring cave wētā as they appear more efficient than transect counts and are relatively inexpensive. However, further calibration trials are needed to determine if indices mirror robust population density estimates.     

Seasonal variation of particulate organic carbon, dissolved organic carbon and the contribution of microbial communities to the live particulate organic carbon in a shallow near-bottom ecosystem at the Northwestern Mediterranean Sea

Microbial planktonic communities (i.e. bacteria and protozoa), phytoplankton, dissolved organic carbon (DOC) and particulate organic carbon (POC) were seasonally examined at Medes Islands (Northwestern Mediterranean) to assess their variation in abundance and composition throughout the year in a near-bottom littoral ecosystem. From October 1995 to November 1996, samples were collected between two and six times per month at 0.5 m above the bottom. Mean DOC and POC values throughout the year were 2560 180 (SE) and 387 ± 35 g C l^-1, respectively. All year, detrital organic carbon (detrital=total POC - live carbon) represented the main POC fraction, and mean live carbon was 24 ± 9 g C l^-1. Winter and spring had maximum values of POC, and spring and summer had maximum values of DOC. Heterotrophic bacteria, with a mean abundance of 5.16 ± 0.08 x 10⁵ cells ml^-1, were the main contributor to live carbon (26 ± 7%). During winter, heterotrophic bacterial biomass decreased 40% due to a decrease in mean biovolume per cell. Synechococcus sp. and Prochlorococcus sp. abundance were 2.24 ± 0.09 x 10⁴ and 1.05 ± 0.07 x 10⁴ cells ml^-1, respectively. However, while Synechococcus sp. were present all year, Prochlorococcus sp. were not observed from April to July. Mean phytoplankton (i.e. diatoms and dinoflagellates) abundance was 2.06 ± 0.40 x 10⁴ cells l^-1 with biomass at a maximum during the winter months, the period with the lowest temperature and the highest nutrient concentration. The size composition of live carbon showed two clearly distinct periods: from December to March, live carbon was dominated in biomass by microplankton, while from April to November, pico- and nanoplankton cells were dominant. Overall, the dynamics of the near-bottom planktonic communities was characterized by a low biomass of heterotrophic and autotrophic bacteria, phytoplankton and ciliates in contrast to previous water column studies. This pattern and the high temporal heterogeneity of the different planktonic communities are discussed in relation to the physical and chemical characteristics of the environment, as well as to the potential role that benthic communities may be exerting in the control of the near-bottom planktonic communities.      

Evidence for coral range expansion accompanied by reduced diversity of Symbiodinium genotypes

Coral Reefs - Zooxanthellate corals are threatened by climate change but may be able to escape increasing temperatures by colonizing higher latitudes. To determine the effect of host range...     

Genetic analysis of the two zebrafish patched homologues identifies novel roles for the hedgehog signaling pathway

Background  

Aberrant activation of the Hedgehog (Hh) signaling pathway in different organisms has shown the importance of this family of morphogens during development. Genetic screens in zebrafish have assigned specific roles for Hh in proliferation, differentiation and patterning, but mainly as a result of a loss of its activity. We attempted to fully activate the Hh pathway by removing both receptors for the Hh proteins, called Patched1 and 2, which are functioning as negative regulators in this pathway.     

High activity of human butyrylcholinesterase at low pH in the presence of excess butyrylthiocholine.

Butyrylcholinesterase is a serine esterase, closely related to acetylcholinesterase. Both enzymes employ a catalytic triad mechanism for catalysis, similar to that used by serine proteases such as alpha-chymotrypsin. Enzymes of this type are generally considered to be inactive at pH values below 5, because the histidine member of the catalytic triad becomes protonated. We have found that butyrylcholinesterase retains activity at pH 相似文献