Female colour polymorphism covaries with reproductive strategies in the tawny owl Strix aluco

Variation in coloration with a strong underlying genetic basis is frequently found in birds, insects, anurans, molluscs and plants. Although such a variation can be large, little is known about its functional value. Correlative data, however, can help suggest testable hypotheses about potential covariation between reproductive parameters and a colour polymorphism displayed by individuals belonging to a single population. In this context, we studied two Swiss populations of tawny owls Strix aluco , a polymorphic species that varies in coloration from reddish-brown to grey. Observations in the first population showed that although greyer females had shorter tarsi, they produced heavier offspring in two of three years. Pairing with respect to plumage coloration was not significantly disassortative, indicating that these correlations were probably not inflated by plumage coloration of the mate. In the second population, where breeding females had been monitored for 14 years, the proportion of all breeding females that were reddish-brown was greater in years when the breeding density was lower. Capture-recapture analyses show that the latter result is explained by the fact that greyish females bred less often than reddish-brown females, although their survival probability was similar. The number of greyer breeding females was greater when spring/summer temperatures were lower. When combined, the results from the two populations lend support to the hypothesis that grey females do not breed every year, but produce offspring of higher quality. Whatever the mechanism underlying the correlations reported in this study, colour polymorphism in female tawny owls appears to reflect some components of individual quality.     

Behavioral and electrophysiological patterns of wakefulness-sleep states in a lizard.

Four individuals of the lizard Ctenosaura pectinata were chronically implanted for electroencephalographic (EEG), electromyographic (EMG) and electro-oculographic (EOG) recordings. Four different vigilance states were observed throughout the nyctohemeral cycle. These states were: Active wakefulness (Aw), quiet wakefulness (Qw), quiet sleep (Qs) and active sleep (As). Each state displayed its own behavioral and electrophysiological characteristics. EEG waves were similar during Aw and Qw but they diminished in amplitude and frequency when passing from these states to Qs, and both parameters increased during As. Muscular activity was intense in Aw, it decreased during Qw and almost disappeared during Qs. This activity reappeared in a phasic way during As, coinciding with generalized motor manifestations. Ocular activity was intense during Aw but minimal during Qw, it disappeared in Qs and was present intermittently in As. Aw, Qw, Qs and As occupied 5.9%, 25.7%, 67.7% and 0.6% of the 24 hr period, respectively. The frequency and duration of As episodes showed great inter-animal variability and the mean duration was of 12.9 sec. Stimuli reaction threshold was highest during sleep. In conclusion, the lizard Ctenosaura pectinata exhibit two sleep phases (Qs and As) that may be assimilated to slow wave sleep (SWS) and paradoxical sleep (PS) of birds and mammals.     

On itinerant water molecules and detectability of protein-protein interfaces through comparative analysis of homologues

We discuss the question of which residues are sufficiently important for protein-protein interaction to be under notable evolutionary pressure. Its interest stems from the applicability of this knowledge in the reverse direction, to detect a protein-protein interface on a single protomer, starting from the rate of mutation of participating residues. Using the analysis of trajectories produced by the molecular dynamics simulations, we suggest that, in the case of water soluble proteins, a large fraction of evolutionarily privileged residues can be found by considering the dynamic behavior of the protein interface and by looking for residues which exchange water molecules with the bulk of the solvent outstandingly slowly (tentatively termed "dry residues"). We show that the dry interface residues are better conserved across homologues than the generic "geometric footprint" and can be quite reliably detected through comparative analysis of protein homologues, without strong dependence on the choice of method. Furthermore, we show that dry residues distinguish themselves through a set of biophysical properties consistent with the known mechanisms of protein oligomerization: their compositional shift toward nonpolar, overlap, and co-location with residues exhibiting low mobility, their two- to threefold increased propensity over the rest of the geometric footprint to form hydrogen bonds, and four- to almost tenfold increased likelihood to participate in formation of salt bridges. These properties, consistently, help understand the observed increase in the evolutionary pressure that dry residues experience.     

Prediction of mean adult survival rates of southern African birds from demographic and ecological covariates

Estimates of annual survival rates of birds are valuable in a wide range of studies of population ecology and conservation. These include modelling studies to assess the impacts of climatic change or anthropogenic mortality for many species for which no reliable direct estimates of survival are available. We evaluate the performance of regression models in predicting adult survival rates of birds from values of demographic and ecological covariates available from textbooks and databases. We estimated adult survival for 67 species using dead recoveries of birds ringed in southern Africa and fitted regression models using five covariates: mean clutch size, mean body mass, mean age at first breeding, diet and migratory tendency. Models including these explanatory variables performed well in predicting adult survival in this set of species, both when phylogenetic relatedness of the species was taken into account using phylogenetic generalized least squares (51% of variation in logit survival explained) and when it was not (48%). Two independent validation tests also indicated good predictive power, as indicated by high correlations of observed with expected values in a leave‐one‐out cross validation test performed using data from the 67 species (35% of variation in logit survival explained), and when annual survival rates from independent mark–recapture studies of 38 southern African species were predicted from covariates and the regression using dead recoveries (48%). Clutch size and body mass were the most influential covariates, both with and without the inclusion of phylogenetic effects, and a regression model including only these two variables performed well in both of the validation tests (39 and 48% of variation in logit survival explained). Our regression models, including the version with only clutch size and body mass, are likely to perform well in predicting adult survival rate for southern African species for which direct survival estimates are not available.     

Antibodies against recombinant heat shock protein 65 of Tropheryma whipplei in patients with and without Whipple's disease.

Tropheryma whipplei is the causative agent of Whipple's disease (WD), a chronic, life-threatening infection. Laboratory diagnosis is mainly based on PCR and histopathological analysis in duodenal biopsies and other specimens requiring invasive procedures. We have examined the presence of antibodies to recombinant heat shock protein (Hsp65) of T. whipplei in patients with Whipple's disease as well as in control subjects by Western blot and enzyme-linked immunosorbent assay (ELISA). A recombinant plasmid carrying the entire T. whipplei hsp65 gene was constructed, and the expression yielded a 65-kDa histidine-tagged protein. Among four patients with Whipple's disease, two showed an IgG- and one an IgA-response, respectively, when analyzed by Western blotting, whereas from 10 patients without Whipple's disease, only two patients showed a positive IgG-response. The differences between the sera from patients and controls were thus not significant. Successful purification of the protein was achieved by Ni-NTA affinity chromatography. Quantitative analysis of serum antibodies by ELISA demonstrated that antibody levels in the sera of 14 patients were not significantly higher than in those of 89 control subjects. The established ELISA test is not useful to clinical diagnostics.     

BIODIVERSITY RESEARCH: Soil moisture limits foraging: a possible mechanism for the range dynamics of the hadeda ibis in southern Africa

Aim Climate limits the ranges of many animals, but the mechanism whereby it does so remains poorly understood. One explanation is that climate (e.g. temperature or rainfall) affects energy expenditure, eventually limiting where a species can occur. We propose that climate can also affect energy uptake through its effect on foraging efficiency. We examined this idea for the case of the hadeda ibis (Bostrychia hagedash) which has considerably expanded its range in southern Africa over the past 80 years. Hadedas forage mainly by extracting earthworms and other invertebrates from soft soil. Soil moisture, in the absence of irrigation largely determined by climate and soil composition, may therefore be a factor limiting feeding efficiency in hadedas. Location We tested this hypothesis by observing foraging hadedas in Cape Town, South Africa. Results We found that soil moisture limited the rate at which hadedas caught prey items, with an optimum on relatively moist ground. We further measured the energy content of the hadedas’ main prey, earthworms. Using published physiological relationships, we estimated that hadedas need to forage for about 6.3 h to meet their daily energy requirements under optimal soil moisture conditions. On dry soils, they need to forage for >12 h, thus showing that soil moisture has the potential to limit the range of this species. Main conclusions Hadedas originally only occurred in the wettest parts of South Africa, but gradually colonized drier areas, and are now absent only from the driest parts of the country. Our results support the view that climate (determining soil moisture) originally limited the hadedas range and that irrigation has been an important factor facilitating their range expansion. The hadeda is an example for a species whose range expansion is driven by interactions between climate and land‐use change.     

Application of ribotyping for differentiating aeromonads isolated from clinical and environmental sources.

We have investigated the usefulness of ribotyping for the differentiation of aeromonads isolated from five patients with gastroenteritis and from the source water, treatment plant, and distribution system of a small public water supply. Aeromonas hydrophila and Aeromonas caviae were isolated from fecal specimens preserved in Cary-Blair transport medium by using blood ampicillin agar or alkaline peptone water (pH 8.4) subcultured to blood ampicillin agar plates. A. hydrophila, Aeromonas sobria, and A. caviae were isolated from duplicate 100-ml water samples by the membrane filter technique by using ampicillin dextrin agar for quantitative determination of growth and alkaline peptone water enrichment for detection of the presence or absence of aeromonads below the detection limit of the membrane filter method. In addition, free chlorine residuals and pH values were determined for all water samples and heterotrophic plate counts and total and fecal coliform analyses were performed on them. Ribotyping patterns of aeromonads recovered from well 1, detention basin, sand filter, softener, and distribution samples were compared with those of the five clinical isolates. All patient strains were unique; however, identical ribotypes of A. hydrophila and A. sobria isolated from multiple sites in the water system indicated colonization of a well, sand filters, and the softener, with the potential for sporadic contamination of distribution water. Plant operational deficiencies were noted and corrected. Ribotyping can effectively differentiate otherwise indistinguishable strains of bacteria, thus providing a powerful tool for investigation of waterborne diseases and bacteriological problems within water treatment plants and distribution systems.     

Character and evolution of protein-protein interfaces

Protein-protein interactions create the macromolecular assemblies and sequential signaling pathways essential for cell function. Their number far exceeds the number of proteins themselves and their experimental characterization, while improving, remains relatively slow. For these reasons, novel computational methods have important roles to play in understanding the physical basis of protein interactions, and in constraining the molecular basis of their specificity. This paper discusses methods based on multiple sequence alignments of protein homologues and phylogenetic trees.