The effect of nutrient addition on the phytoplankton community of an oligotrophic lake

This investigation was performed during a 5-yr period (1974–1978) in the oligotrophic Lake Langvatn, Central Norway. In 1975 and 1976 the lake was enriched with a commercial fertilizer, In 1975 increase in phytoplankton biomass was first recorded more than three weeks after the fertilization started, despite a near fivefold increase in the primary production after fertilizer application. The mean seasonal biomass increased from c. 3500 mg wet weight m⁻² in 1974 to 4400 mg in 1975. In 1976 the biomass increased to near 9600 mg ⁻² and the seasonal primary production to 49.0 g C m⁻² (22.2 g C in 1975), despite a reduction in the nutrients added. Chrysophytes constituted the largest share of the seasonal algal biomass in all years, but in fertilization periods cryptophytes dominated in 1975 and diatoms, chlorophytes and cryptophytes in 1976. The highest biomass turnover rate was recorded during a period of cryptophyte dominance. The different biomass and production development in the fertilization years may be explained by a change in the consumer level.     

Poor physical fitness is independently associated with mild cognitive impairment in elderly Koreans

The purpose of this study was to investigate the association between physical fitness and mild cognitive impairment (MCI) in elderly Koreans. This was a cross-sectional study that involved 134 men and 299 women aged 65 to 88 years. Six senior fitness tests were used as independent variables: 30 s chair stand for lower body strength, arm curl for upper body strength, chair-sit-and-reach for lower body flexibility, back scratch for upper body flexibility, 8-ft up-and-go for agility/dynamic balance, and 2-min walk for aerobic endurance. Global cognitive function was assessed using the Korean version of the Mini-Mental State Examination (MMSE). Potential covariates such as age, education levels, blood lipids, and insulin resistance (IR) markers were also assessed. Compared to individuals without MMSE-based MCI, individuals with MMSE-based MCI had poor physical fitness based on the senior fitness test (SFT). There were significant positive trends observed for education level (p=0.001) and MMSE score (p<0.001) across incremental levels of physical fitness in this study population. Individuals with moderate (OR=0.341, p=0.006) and high (OR=0.271, p=0.007) physical fitness based on a composite score of the SFT measures were less likely to have MMSE-based MCI than individuals with low physical fitness (referent, OR=1). The strength of the association between moderate (OR=0.377, p=0.038) or high (OR=0.282, p=0.050) physical fitness and MMSE-based MCI was somewhat attenuated but remained statistically significant even after adjustment for the measured compounding factors. We found that poor physical fitness was independently associated with MMSE-based MCI in elderly Koreans.     

Rex1/Zfp42 is dispensable for pluripotency in mouse ES cells

Background  

Rex1/Zfp42 has been extensively used as a marker for the undifferentiated state of pluripotent stem cells. However, its function in pluripotent stem cells including embryonic stem (ES) cells remained unclear although its involvement in visceral endoderm differentiation in F9 embryonal carcinoma (EC) cells was reported.     

Molecular dynamics study of the KcsA potassium channel

The structural, dynamical, and thermodynamic properties of a model potassium channel are studied using molecular dynamics simulations. We use the recently unveiled protein structure for the KcsA potassium channel from Streptomyces lividans. Total and free energy profiles of potassium and sodium ions reveal a considerable preference for the larger potassium ions. The selectivity of the channel arises from its ability to completely solvate the potassium ions, but not the smaller sodium ions. Self-diffusion of water within the narrow selectivity filter is found to be reduced by an order of magnitude from bulk levels, whereas the wider hydrophobic section of the pore maintains near-bulk self-diffusion. Simulations examining multiple ion configurations suggest a two-ion channel. Ion diffusion is found to be reduced to approximately (1)/(3) of bulk diffusion within the selectivity filter. The reduced ion mobility does not hinder the passage of ions, as permeation appears to be driven by Coulomb repulsion within this multiple ion channel.     

Topological analysis of a haloacid permease of a Burkholderia sp. bacterium with a PhoA-LacZ reporter

Background  

2-Haloacids can be found in the natural environment as degradative products of natural and synthetic halogenated compounds. They can also be generated by disinfection of water and have been shown to be mutagenic and to inhibit glyceraldehyde-3-phosphate dehydrogenase activity. We have recently identified a novel haloacid permease Deh4p from a bromoacetate-degrading bacterium Burkholderia sp. MBA4. Comparative analyses suggested that Deh4p is a member of the Major Facilitator Superfamily (MFS), which includes thousands of membrane transporter proteins. Members of the MFS usually possess twelve putative transmembrane segments (TMS). Deh4p was predicted to have twelve TMS. In this study we characterized the topology of Deh4p with a PhoA-LacZ dual reporters system.     

Role of chloride/bicarbonate antiport in the control of cytosolic pH. Cell-line differences in activity and regulation of antiport

Sodium-linked and sodium-independent HCO3-/Cl- antiport was measured under different conditions in a number of cell lines. Transport of HCO3- was estimated from its effect on intracellular pH (pHi) measured with the fluorescent probe 2',7'-bis(carboxyethyl)-5,6-carboxyfluorescein. The associated ion fluxes were estimated from the transport of 36Cl- and 22Na+. Na+-dependent and Na+-independent HCO3-/Cl- antiport were found in many, but not in all cell lines tested. The Na+-independent HCO3-/Cl- antiport was found to be highly pHi-dependent in a number of cell lines, whereas in others this was not the case. Some cell lines were found to have both Na+-dependent and Na+-independent HCO3-/Cl- antiport, whereas in others we could detect only one of these mechanisms. Na+/H+ antiport, which is quantitatively the most important H+-extruding mechanism, was found in all cell lines tested, but the activity varied strongly. Possible reasons for the qualitative and quantitative differences in antiport activity are discussed.     

Cardiovascular responses to thoracic skin cooling: comparison of incubating and non-incubating Bantam hens

Summary Body temperatures, metabolic rate, haemostatic parameters, and cardiovascular reactions to thoracic skin cooling were compared between incubating (broody) and non-broody Bantam hens. Under resting conditions, without thoracic skin cooling, cardiac output of broody hens was twice that of non-broody hens. However, their metabolic rate was increased by only one-third over that of non-broody hens, and the arteriovenous difference in oxygen concentration was smaller for broody birds. This indicates a higher rate of non-nutrient blood flow during incubation. A higher thoracic skin temperature (T _ths) for broody hens compared to non-broody hens suggests that brood patches are the probable site of this increased flow through arteriovenous anastomoses (AVAs). Thoracic skin cooling increased metabolic rate and significantly more in broody hens, but did not increase AVA blood flow. The relation between metabolic rate and total peripheral resistance indicated more intense vasodilation for broody hens at the relatively low metabolic rates during moderate cooling, and more intense vasoconstriction for the broody hens at the high metabolic rates during stronger cooling. This corresponds to T _ths measurements indicating dilation of brood patch AVAs with moderate cooling and AVA constriction with severe cooling. During moderate cooling, vasoconstriction in the feet and wattles of broody hens (but not of non-broody hens) freen non-nutrient blood flow for redistribution to the brood patches. Thus, the cardiovascular system of the hen seems to adjust to the special demands of incubation by a permanent increase of AVA flow in the brood patch, and by an additional capacity for brood patch vasodilation induced by cold stimuli in the range from 35 to 25°C. This corresponds well to the temperature range for development of galliform embryos.Abbreviations AVAs arteriovenous anastomoses - BP arterial blood pressure - CaO₂ and CvO₂ arterial and venous oxygen concentrations, respectively - HR heart rate - MAP mean arterial blood pressure - cardiac output - SV stroke volume - T _bs back skin temperature - T _c cofon temperature - T _f foot temperature - T _ths thoracic skin temperature - TPR total peripheral resistance - T _w wattle temperature - oxygen consumption     

Algorithms and software for support of gene identification experiments

MOTIVATION: Gene annotation is the final goal of gene prediction algorithms. However, these algorithms frequently make mistakes and therefore the use of gene predictions for sequence annotation is hardly possible. As a result, biologists are forced to conduct time-consuming gene identification experiments by designing appropriate PCR primers to test cDNA libraries or applying RT-PCR, exon trapping/amplification, or other techniques. This process frequently amounts to 'guessing' PCR primers on top of unreliable gene predictions and frequently leads to wasting of experimental efforts. RESULTS: The present paper proposes a simple and reliable algorithm for experimental gene identification which bypasses the unreliable gene prediction step. Studies of the performance of the algorithm on a sample of human genes indicate that an experimental protocol based on the algorithm's predictions achieves an accurate gene identification with relatively few PCR primers. Predictions of PCR primers may be used for exon amplification in preliminary mutation analysis during an attempt to identify a gene responsible for a disease. We propose a simple approach to find a short region from a genomic sequence that with high probability overlaps with some exon of the gene. The algorithm is enhanced to find one or more segments that are probably contained in the translated region of the gene and can be used as PCR primers to select appropriate clones in cDNA libraries by selective amplification. The algorithm is further extended to locate a set of PCR primers that uniformly cover all translated regions and can be used for RT-PCR and further sequencing of (unknown) mRNA.