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Ryan M. Summers Jennifer L. Seffernick Erik M. Quandt Chi Li Yu Jeffrey E. Barrick Mani V. Subramanian 《Journal of bacteriology》2013,195(17):3933-3939
Caffeine and other N-methylated xanthines are natural products found in many foods, beverages, and pharmaceuticals. Therefore, it is not surprising that bacteria have evolved to live on caffeine as a sole carbon and nitrogen source. The caffeine degradation pathway of Pseudomonas putida CBB5 utilizes an unprecedented glutathione-S-transferase-dependent Rieske oxygenase for demethylation of 7-methylxanthine to xanthine, the final step in caffeine N-demethylation. The gene coding this function is unusual, in that the iron-sulfur and non-heme iron domains that compose the normally functional Rieske oxygenase (RO) are encoded by separate proteins. The non-heme iron domain is located in the monooxygenase, ndmC, while the Rieske [2Fe-2S] domain is fused to the RO reductase gene, ndmD. This fusion, however, does not interfere with the interaction of the reductase with N1- and N3-demethylase RO oxygenases, which are involved in the initial reactions of caffeine degradation. We demonstrate that the N7-demethylation reaction absolutely requires a unique, tightly bound protein complex composed of NdmC, NdmD, and NdmE, a novel glutathione-S-transferase (GST). NdmE is proposed to function as a noncatalytic subunit that serves a structural role in the complexation of the oxygenase (NdmC) and Rieske domains (NdmD). Genome analyses found this gene organization of a split RO and GST gene cluster to occur more broadly, implying a larger function for RO-GST protein partners. 相似文献
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Zhang Guanshi Zhang Jialing DeHoog Rachel J. Pennathur Subramaniam Anderton Christopher R. Venkatachalam Manjeri A. Alexandrov Theodore Eberlin Livia S. Sharma Kumar 《Metabolomics : Official journal of the Metabolomic Society》2020,16(1):1-12
Metabolomics - Food and dietary ingredients have significant effects on metabolism and health. To evaluate whether and how different diets affected the serum lipidomic profile of dogs. Sixteen... 相似文献
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Manouchehrinejad Maryam Sahoo Kamalakanta Kaliyan Nalladurai Singh Hari Mani Sudhagar 《The International Journal of Life Cycle Assessment》2020,25(1):89-104
The International Journal of Life Cycle Assessment - Napier grass, one of the high yield perennial energy crops can be grown on marginal lands with minimal inputs, but with increased soil carbon... 相似文献
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Parab Ankita Rajendra Lynn Chew Bee Subramaniam Sreeramanan 《Molecular biology reports》2021,48(11):7223-7231
Molecular Biology Reports - Clonal propagation is one of the attributes of plant tissue culture. Therefore, analysis of genetic stability among the in vitro cultured plants is a crucial step. It... 相似文献
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Mandal Anup Mani Anjali Kottayil Lamech Ruban Anandajothi Elamaran Venkatachalam Shanmuga Arasu Dinakaran Gajendiran K. Quinitio Emilia T. Kandan Shanmuganathan 《Biochemical genetics》2021,59(4):856-869
Biochemical Genetics - Misleading identification and subsequent publications on biological, molecular, and aquaculture data of mangrove mud crab (genus Scylla de Hann 1833) is a major concern in... 相似文献
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Arunagiri Kuha Deva Magendhra Rao Vittal Rangan Arvinden Deepa Ramasamy Krishna Patel Balaiah Meenakumari Priya Ramanathan Shirley Sundersingh Velusami Sridevi Thangarajan Rajkumar Zdenko Herceg Harsha Gowda Samson Mani 《Journal of cellular and molecular medicine》2021,25(8):3912-3921
Breast cancer is a major cause of cancer-related death in women worldwide. Non-coding RNAs are a potential resource to be used as an early diagnostic biomarker for breast cancer. Circular RNAs are a recently identified group of non-coding RNA with a significant role in disease development with potential utility in diagnosis/prognosis in cancer. In this study, we identified 26 differentially expressed circular RNAs associated with early-stage breast cancer. RNA sequencing and two circRNA detection tools (find_circ and DCC) were used to understand the circRNA expression signature in breast cancer. We identified hsa_circ_0006743 (circJMJD1C) and hsa_circ_0002496 (circAPPBP1) to be significantly up-regulated in early-stage breast cancer tissues. Co-expression analysis identified four pairs of circRNA-miRNA (hsa_circ_0023990 : hsa-miR-548b-3p, hsa_circ_0016601 : hsa_miR-1246, hsa_circ_0001946 : hsa-miR-1299 and hsa_circ_0000117:hsa-miR-502-5p) having potential interaction. The miRNA target prediction and network analysis revealed mRNA possibly regulated by circRNAs. We have thus identified circRNAs of diagnostic implications in breast cancer and also observed circRNA-miRNA interaction which could be involved in breast cancer development. 相似文献
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