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141.
Twenty-seven Gram-positive strains were characterized physiologically and numerically and classified them into four groups according to their specific activities for utilization of linear alkyl ethers (AEs), cyclic AEs, monoalkoxybenzenes and 1,4-diethoxybenzene. The comparative analysis of the 16S ribosomal RNA gene and 16S-23S intergenic spacer region showed that they belonged to the genera Rhodococcus and Gordonia. Alkyl ether-utilizing rhodococci appeared to involve various and diverse cytochromes P450 of the families CYP116 (25 positive strains from 27), CYP153 (5/27), CYP249 (1/27) and a new family P450RR1 (27/27). The presence of P450RR1 was strongly related to the specific activity for utilization of 2-methoxyphenol and 2-ethoxyphenol. In addition, 26 of 27 strains contained multiple alkB genes coding for probable non-haem iron containing alkane monooxygenases and hydroxylases. Similar DNA fragments coding for a tetrahydrofuran monooxygenase A subunit (ThmA) were found in all cyclic AE-utilizing strains and nearly identical DNA fragments coding for likely orthologues of a propane monooxygenase A subunit (PrmA) in all linear AE-utilizing strains. The substrate availability in the degradation of aryl AEs, cyclic AEs and linear AEs agreed with the molecular probing of the respective genes encoding cytochrome P450RR1, ThmA and PrmA. 相似文献
142.
Louisy Sanches dos Santos Camila Azevedo Antunes Cintia Silva dos Santos José Augusto Adler Pereira Priscila Soares Sabbadini Maria das Gra?as de Luna Vasco Azevedo Raphael Hirata Júnior Andreas Burkovski Lídia Maria Buarque de Oliveira Asad Ana Luíza Mattos-Guaraldi 《Memórias do Instituto Oswaldo Cruz》2015,110(5):662-668
Corynebacterium diphtheriae, the aetiologic agent of diphtheria,
also represents a global medical challenge because of the existence of invasive
strains as causative agents of systemic infections. Although tellurite
(TeO32-) is toxic to most microorganisms, TeO32--resistant
bacteria, including C. diphtheriae, exist in
nature. The presence of TeO32--resistance (TeR)
determinants in pathogenic bacteria might provide selective advantages in the natural
environment. In the present study, we investigated the role of the putative
TeR determinant (CDCE8392_813gene) in the virulence
attributes of diphtheria bacilli. The disruption of CDCE8392_0813 gene expression in
the LDCIC-L1 mutant increased susceptibility to TeO32- and reactive oxygen
species (hydrogen peroxide), but not to other antimicrobial agents. The LDCIC-L1
mutant also showed a decrease in both the lethality of Caenorhabditis elegans
and the survival inside of human epithelial cells compared to wild-type
strain. Conversely, the haemagglutinating activity and adherence to and formation of
biofilms on different abiotic surfaces were not regulated through the CDCE8392_0813
gene. In conclusion, the CDCE8392_813 gene contributes to the TeR and
pathogenic potential of C. diphtheriae. 相似文献
143.
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145.
Luís Eduardo Fernandes Rodrigues da Conceição Margarete Alice Fontes Saraiva Raphael Hermano Santos Diniz Juliana Oliveira Gustavo Dimas Barbosa Florencia Alvarez Lygia Fátima da Mata Correa Hygor Mezadri Mauricio Xavier Coutrim Robson José de Cássia Franco Afonso Candida Lucas Ieso Miranda Castro Rogelio Lopes Brandão 《Journal of industrial microbiology & biotechnology》2015,42(2):237-246
146.
Non-allelic homologous recombination (NAHR) is a common mechanism for generating genome rearrangements and is implicated in numerous genetic disorders, but its detection in high-throughput sequencing data poses a serious challenge. We present a probabilistic model of NAHR and demonstrate its ability to find NAHR in low-coverage sequencing data from 44 individuals. We identify NAHR-mediated deletions or duplications in 109 of 324 potential NAHR loci in at least one of the individuals. These calls segregate by ancestry, are more common in closely spaced repeats, often result in duplicated genes or pseudogenes, and affect highly studied genes such as GBA and CYP2E1.
Electronic supplementary material
The online version of this article (doi:10.1186/s13059-015-0633-1) contains supplementary material, which is available to authorized users. 相似文献147.
Nishikaku AS Molina RF Albe BP Cunha Cda S Scavone R Pizzo CR de Camargo ZP Burger E 《FEMS immunology and medical microbiology》2011,63(2):281-288
The important role of interferon-gamma (IFN-γ) in protective immunity in mycosis is well established, except for its participation in fungal granulomas. Herein, we employ immunohistochemical reactions to describe the in situ localization of IFN-γ in granulomas of susceptible (B10.A) and resistant (A/J) mice to infection with Paracoccidioides brasiliensis (Pb). After infection with the highly virulent Pb18, IFN-γ-positive lymphomononuclear cells were localized mainly at the periphery of granulomas in both mouse strains. The numbers of positive cells found in compact granulomas of A/J mice increased significantly from 15 to 120 days postinfection. At this time, significantly more positive cells were detected in the compact granulomas of resistant mice than in the loose, multifocal lesions of the susceptible ones. In infection with the slightly virulent Pb265, the same pattern of IFN-γ localization was found as in Pb18 infection, but there was decreased staining at 120 days due to the presence of only residual lesions in both mouse strains. The marked IFN-γ staining observed in the granulomas of resistant mice at the later stage of Pb infection confirms its importance in fungal dissemination control, and suggests a contribution to the development of paracoccidioidal granuloma. 相似文献
148.
Coffee pulp is the main solid residue from the wet processing of coffee berries. Due to presence of anti-physiological and
anti-nutritional factors, coffee pulp is not considered as adequate substrate for bioconversion process by coffee farmers.
Recent stringent measures by Pollution Control authorities, made it mandatory to treat all the solid and liquid waste emanating
from the coffee farms. A study was conducted to evaluate the efficiency of an exotic (Eudrilus eugeniae) and a native earthworm (Perionyx ceylanesis) from coffee farm for decomposition of coffee pulp into valuable vermicompost. Exotic earthworms were found to degrade the
coffee pulp faster (112 days) as compared to the native worms (165 days) and the vermicomposting efficiency (77.9%) and vermicompost
yield (389 kg) were found to significantly higher with native worms. The multiplication rate of earthworms (280%) and worm
yield (3.78 kg) recorded significantly higher with the exotic earthworms. The percentage of nitrogen, phosphorous, potassium,
calcium and magnesium in vermicompost was found to increase while C:N ratio, pH and total organic carbon declined as a function
of the vermicomposting. The plant nutrients, nitrogen (80.6%), phosphorus (292%) and potassium (550%) content found to increase
significantly in the vermicompost produced using native earthworms as compared to the initial values, while the calcium (85.7%)
and magnesium (210%) content found to increase significantly in compost produced utilizing exotic worms. Vermicompost and
vermicasts from native earthworms recorded significantly higher functional microbial group’s population as compared to the
exotic worms. The study reveals that coffee pulp can be very well used as substrate for vermicomposting using exotic (Eudrilus eugeniae) and native earthworm (Perionyx ceylanesis). 相似文献
149.
150.
Abderamane B Tih AE Ghogomu RT Blond A Bodo B 《Zeitschrift für Naturforschung. C, Journal of biosciences》2011,66(3-4):87-92
Six isoflavonoid derivatives among which three are new have been isolated from the stem heartwood of Lophira alata. The structures were elucidated from spectroscopic and chemical evidences. Two have unusual carbon skeletons, possibly resulting from a variant of isoflavonoid biogenesis. The two compounds form the first members of a new subclass of flavonoid compounds which we call "isobiflavonoids". The presence of these isoflavonoid compounds in this plant of the Ochnaceae family has important chemotaxonomic implications since it modifies the botanic distribution of isoflavonoid compounds in non-leguminous plants. 相似文献