Trophic interactions and the diet composition of sympatric finfish predators in the tropical demersal ecosystem in the Bay of Bengal

The dietary composition, foraging strategies, and interspecific trophic interactions were identified for four major demersal carnivorous finfishes, namely, croaker Otolithes ruber, hairtail Trichiurus lepturus, threadfin bream Nemipterus japonicus, and lizardfish Saurida undosquamis, along the north-western part of Bay of Bengal from 2014 to 2016. Two species, Trichiurus lepturus and Saurida undosquamis, were identified as finfish feeders due to the high number of teleost (clupeids and engraulids) prey. One species, Nemipterus japonicus, had a significantly different diet of metapenaeids and charybdids, and was identified as a shellfish feeder. The final species, Otolithes ruber, preyed equally on crustaceans and teleosts, and was identified as a shellfish-finfish feeder. The feeding activity of all four species was lower during peak spawning periods and tended to increase with maturity. Feeding preferences varied with seasons. The trophic level ranged from 3.49 to 4.01, classifying the four species as medium-carnivores or meso-predators. Niche breadth ranged from 0.170 to 0.421, with seasonal and ontogenetic variations. Individual or subgroup specialization was observed on dominant prey, but intraspecific diet variations indicated all four species to be opportunistic predators. There was substantial prey overlap for Saurida undosquamis with Otolithes ruber and Trichiurus lepturus, which increased ontogenetically and coincided with their peak spawning. Sharing of abundant prey resources together with temporal and ontogenetic resource partitioning at intra- and interspecific levels possibly lowered dietary competition, thereby facilitating the coexistence of these demersal predators. This study provides new information on feeding interactions from a tropical demersal ecosystem that can be applied for the ecosystem-based management of trawl fisheries.     

Complete intra-annual cycle of leaf area index in a Platanus orientalis L. stand

Leaf area index (LAI) analysis of deciduous forest trees is usually restricted to seasonal monitoring involving the assessment of distinct leaf phenological stages within definite time intervals of the year. However, continuous LAI monitoring that includes entire leaf periods is necessary to define the ecophysiological characteristics of deciduous trees. Therefore, this study investigated the intra-annual cycle of the LAI for a Platanus orientalis L. stand in the Bart?n watershed of Turkey. A complete cycle involves three periods: foliation, stable, and defoliation. The foliation period comprises budburst, leaf emergence and flushing sessions, whereas the defoliation period consists of leaf senescence and leaf fall sessions. The stable period is in between these two periods when LAI values are at a climax around maximum. Eight points were determined in the field for the analysis of LAI by a hemispherical photography technique. Over a relatively frequent schedule, photographs were taken almost weekly during the foliation period. Both weekly and approximate monthly photographs were applied during the stable period. Finally, near-monthly photographs were taken for the defoliation period. The foliation period lasted for about 1.5 months from mid-April to May with the mean LAI reaching from 0.16 up to 2.38. Mean LAI was between 2.38 and 2.47 for a stable period over 2 months (June and July). For the defoliation period, mean LAI dropped from 2.42 down to 0.35 over 5 months from August to December. The total foliated period was more than 8 months, which is relatively long for a temperate forest. In addition, correlations between mean LAI and maximum, mean and minimum temperatures were highly significant (P < 0.01) with coefficients (r) of 0.79, 0.90 and 0.93, respectively. By describing the intra-annual LAI pattern, this study fills a gap in the literature on the phenology of Platanus orientalis L.     

Diversity and functional traits of culturable microbiome members,including cyanobacteria in the rice phyllosphere

The diversity and abundance of culturable microbiome members of the rice phyllosphere was investigated using cv. Pusa Punjab Basmati 1509. Both diversity and species richness of bacteria were significantly higher in plants in pots in a semi‐controlled environment than those in fields. Application of fertilisers reduced both diversity and species richness in field‐grown plants under a conventional flooded system of rice intensification (SRI) and in dry‐seeded rice (DSR) modes. Sequence analyses of 16S rDNA of culturable bacteria, those selected after amplified ribosomal DNA restriction analysis (ARDRA), showed the dominance of α‐proteobacteria (35%) and actinobacteria (38%); Pantoea, Exiguobacterium and Bacillus were common among the culturable phyllospheric bacteria. About 34% of 83 culturable bacterial isolates had higher potential (>2 μg·ml^?1) for indole acetic acid production in the absence of tryptophan. Interestingly, the phyllosphere bacterial isolates from the pot experiment had significantly higher potential for nitrogen fixation than isolates from the field experiment. Enrichment for cyanobacteria showed both unicellular forms and non‐heterocystous filaments under aerobic as well as anaerobic conditions. PCR‐DGGE analysis of these showed that aerobic and anaerobic conditions as well as the three modes of cultivation of rice in the field strongly influenced the number and abundance of phylotypes. The adaptability and functional traits of these culturable microbiome members suggest enormous diversity in the phyllosphere, including potential for plant growth promotion, which was also significantly influenced by the different methods of growing rice.     

Effect of Co-transfection of Anti-myostatin shRNA Constructs in Caprine Fetal Fibroblast Cells

Knockdown of myostatin gene (MSTN), transforming growth factor-β superfamily, and a negative regulator of the skeletal muscle growth, by RNA interference (RNAi), has been reported to increase muscle mass in mammals. The current study was aimed to cotransfect two anti-MSTN short hairpin RNA (shRNA) constructs in caprine fetal fibroblast cells for transient silencing of MSTN gene. In the present investigation, approximately 89% MSTN silencing was achieved in transiently transfected caprine fetal fibroblast cells by cotransfection of two best out of four anti-MSTN shRNA constructs. Simultaneously, we also monitored the induction of IFN responsive genes (IFN), pro-apoptotic gene (caspase3) and anti-apoptotic gene (MCL-1) due to cotransfection of different anti-MSTN shRNA constructs. We observed induction of 0.66-19.12, 1.04-4.14, 0.50-3.43, and 0.42-1.98 for folds IFN-β, OAS1, caspase3, and MCL-1 genes, respectively (p < 0.05). This RNAi based cotransfection method could provide an alternative strategy of gene knockout and develop stable caprine fetal fibroblast cells. Furthermore, these stable cells can be used as a cell donor for the development of transgenic cloned embryos by somatic cell nuclear transfer (SCNT) technique.     

Glycosylation of the laminin receptor (α3β1) regulates its association with tetraspanin CD151: Impact on cell spreading,motility, degradation and invasion of basement membrane by tumor cells

Invasion is the key requirement for cancer metastasis. Expression of β1,6 branched N-oligosaccharides associated with invasiveness, has been shown to promote adhesion to most Extra Cellular Matrix (ECM) and basement membrane (BM) components and haptotactic motility on ECM (fibronectin) but attenuate it on BM (laminin/matrigel) components. To explore the mechanism and to evaluate the significance of these observations in terms of invasion, highly invasive B16BL6 cells were compared with the parent (B16F10) cells or B16BL6 cells in which glycosylation was inhibited. We demonstrate that increased adhesion to matrix components induced secretion of MMP-9, important for invasion. Further, both the subunits of integrin receptors for fibronectin (α5β1) and laminin (α3β1) on B16BL6 cells were shown to carry these oligosaccharides. Although, glycosylation of receptors had no effect on their surface expression, it had same differential effect on cell spreading as haptotactic motility. Absence of correlation between invasiveness and expression of most tetraspanins (major regulators of integrin function) hints at an alternate mechanism. Here we show that glycosylation on α3β1 impedes its association with CD151 and modulates spreading and motility of cells apparently to reach an optimum required for invasion of BM. These studies demonstrate the complex mechanisms used by cancer cells to be invasive.     

A sphingolipid rich lipid fraction isolated from attenuated Leishmania donovani promastigote induces apoptosis in mouse and human melanoma cells in vitro

Lipids, especially sphingolipids, are emerging as inducer of apoptosis in a wide range of immortal cells, potentiating their therapeutic application in cancer. In the present study, a sphingolipid rich lipid fraction (denoted here as ALL), isolated from an attenuated strain of Leishmania donovani promastigote, was tested for its tumoricidal activity taking melanoma, the dreaded form of skin cancer cells, as model. ALL was found to induce chromatin condensation, internucleosomal DNA fragmentation and phosphatidylserine externalization with enhanced cell population in sub-G1 region in both mouse and human melanoma systems, namely B16F10 and A375 respectively. These are the hallmarks of cells undergoing apoptosis. Further analysis demonstrated that ALL treated melanoma cells showed significant increase in ROS generation, mitochondrial membrane potential depolarization, release of cytochrome c, and caspase-3 activation, which are the events closely involved in apoptosis. These findings indicate that one or more bioactive sphingolipid(s)/ceramide(s) present in ALL could be the causative agent(s) for the induction of apoptosis in melanoma cells. Further studies are thus necessary to identify these specific bioactive sphingolipid(s)/ceramide(s) and to establish their mechanism of action, in order to explore their use as anticancer agents.