Evaluating Hydroperiod Response in Restored Carolina Bay Wetlands Using Soil Physicochemical Properties

Carolina bays are shallow depression wetlands found in the southeastern United States that have been severely altered by human activity. The need to restore these complex and diverse systems is well established, but our limited understanding of wetland hydrologic processes in these systems hinders our ability to assess the effectiveness of bay restoration efforts. Carolina bays exhibit a wide range of moisture regimes from seasonally saturated to semipermanently inundated. Differing physicochemical properties of soils within bay interiors may control bay hydrology. However, previous efforts to establish relationships between soil characteristics and bay hydrology have been inconclusive. An assessment of soil and hydroperiod was initiated in 16 bays designated to be restored and 6 bays that were not restored (reference). Soil morphology was described, and permanent monitoring wells were installed at each site. Multiple regression analysis was used to determine relationships between the soil physicochemical characteristics and the bay hydroperiod for restored and reference bays in both pre‐ and postrestoration periods. A significant relationship (r²= 0.75, p= 0.02) between prerestoration hydroperiod and clay content in the argillic horizon (Bt) of the reference bays was observed. This relationship was then used to evaluate hydroperiod change in the restored bays from the postrestoration period. The relationship accurately identified sites that exhibited high prerestoration hydroperiods and did not need hydrologic restoration (n= 4) and effectively showed sites that exhibited substantial increases in hydroperiod due to the restoration activities (n= 7).     

Skin structure in six dragonet species (Gobiesociformes; Callionymidae): interspecific differences in glandular cell types and mucus secretion

A comparative histological and histochemical study on the skin structure of six dragonet species, Synchiropus splendidus , Synchiropus picturatus, Synchiropus ocellatus , Repomucenus richardsonii , Callionymus decoratus and Callionymus risso showed that the epidermis of all species was rich in mucous cells (globlet cells), varying in distribution and elaboration among species. A second, distinctive, cell type, the sacciform cell, was also found in S. splendidus and S. picturatus . The secretions of these two cell types probably serve several functions, including those related to predation and the close contact that these species have with the substratum. The differences in type, elaboration and distribution of the cells suggested a pattern among the six callionymid species, in relation to habitat and body colouration differences.     

ALLOZYME VARIATION,GENECOLOGY, AND PHYTOGEOGRAPHY OF ANTENNARIA ARCUATA (ASTERACEAE), A RARE SPECIES FROM THE GREAT BASIN AND RED DESERT WITH SMALL DISJUNCT POPULATIONS

Antennaria arcuata (Asteraceae: Inuleae) is a rare sexual diploid species that occurs in three disjunct regions of Idaho, Nevada, and Wyoming. Isozyme diversity in six populations of the species from the three regions utilized 26 putative loci to provide clues to its population genetic structure. Results show that, in general, the amount of genetic diversity in A. arcuata is very low in comparison to other sexual species of Antennaria. The values of several genetic statistics such as mean number of alleles per locus, proportion of loci polymorphic, and observed heterozygosity, are significantly lower than populations of any of 17 other sexual species of Antennaria that have been studied previously. It is likely that the unusual disjunct and restricted distribution of A. arcuata is partially the result of its unusual ecology, as it occurs in moist basins having high concentrations of salts that are frequently disturbed by large grazing animals. Canonical correspondence analysis shows strong relationships between several edaphic, environmental, and geographic features and the genetic variation in the populations. The migration of A. arcuata to other regions since the end of the Wisconsinan might have been inhibited by the fact that suitable habitats occur as small isolated islands in a sea of inhospitable terrain, the dry sagebrush steppe.     

Nucleotide-dependent substrate recognition by the AAA+ HslUV protease

ATP-dependent protein degradation is controlled principally by substrate recognition. The AAA+ HslU ATPase is thought to bind protein substrates, denature them, and translocate the unfolded polypeptide into the HslV peptidase. The lack of well-behaved high-affinity substrates for HslUV (ClpYQ) has hampered understanding of the rules and mechanism of substrate engagement. We show that HslUV efficiently degrades Arc repressor, especially at heat-shock temperatures. Degradation depends on sequences near the N terminus of Arc. Fusion protein and peptide-binding experiments demonstrate that this sequence is a degradation tag that binds directly to HslU. Strong binding of this tag to the enzyme requires ATP and Mg(2+). Furthermore, fusion of this sequence to a protein with marked mechanical stability leads to complete degradation. Thus, these experiments demonstrate that HslUV is a powerful protein unfoldase and that initial substrate engagement by the HslU ATPase must occur after ATP binding.     

Enhanced intracellular stability of sFv-Fc fusion intrabodies

The ability of intracellular antibodies (intrabodies) to block the function of a target protein can be dependent on the stability of the single-chain antibody (sFv) when expressed in the intracellular environment. Low-affinity sFvs capable of reaching high steady-state levels can be more effective modulators of target proteins than high-affinity, unstable sFvs. In an effort to enhance the intracellular stability of sFvs when expressed as intrabodies, we have generated novel sFv-Fc fusion intrabodies. Fusion of the native sFv sequence with the entire heavy chain constant region fragment of IgG results in decreased turnover of the intrabody and enhanced steady-state accumulation of sFv-Fc protein, while maintaining the ability to target intrabody expression to sub-cellular compartments. Here, we describe the rationale and design for this strategy using two anti-cyclin E sFvs constructed for use as intrabodies.     

In vitro murine posterior frontal suture fate is age-dependent: implications for cranial suture biology

In CD-1 mice, the posterior frontal suture (analogous to the human metopic suture) fuses while all other cranial sutures remain patent. In an in vitro organ culture model, the authors previously demonstrated that posterior frontal sutures explanted immediately before the onset of suture fusion (at 25 days old) mimic in vivo physiologic fusion. In the first portion of this study, the authors defined how early in development the posterior frontal suture fuses in their tension-free, serum-free organ culture system by serially analyzing posterior frontal suture fusion from calvariae explanted at different stages of postnatal development. Their results revealed a divergence of suture fate leading to abnormal patency or physiologic fusion between the first and second weeks of life, respectively, despite viability and continued growth of the calvarial explants in vitro. From these data, the authors postulated that the gene expression patterns present in the suture complex at the time of explant may determine whether the posterior frontal suture fuses or remains patent in organ culture. Therefore, to elucidate potentially important differences in gene expression within this "window of opportunity," they performed a cDNA microarray analysis on 5-day-old and 15-day-old posterior frontal and sagittal whole suture complexes corresponding to the age ranges for unsuccessful (1 to 7 days old) and successful (14 to 21 days old) in vitro posterior frontal suture fusion. Overall, their microarray results reveal interesting differential expression patterns of candidate genes in different categories, including angiogenic cytokines and mechanosensitive genes potentially important in cranial suture biology.     

Reciprocal inhibition of umbilical uptake within groups of amino acids

Eight pregnant sheep were infused with two amino acid mixtures of different composition: essential amino acids only and the essentials plus some of the nonessentials. Uterine and umbilical uptakes of amino acids were measured before and during infusion. For most of the amino acids, the infusion increased both maternal plasma concentration and umbilical uptake. However, depending on the infusate composition, the increase in maternal concentration of some amino acids was associated with no change or a significant reduction in umbilical uptake. Data were pooled from this and other, similar studies to test the hypothesis that umbilical uptake of several amino acids can be inhibited by coinfused amino acids. The test consisted of fitting the data, by means of multiple regression analysis, to the linear transformation of a saturation kinetics equation in which uptake is assumed to depend on maternal arterial concentrations. The analysis showed significant inhibitory effects within the neutral essential amino acids group and within the lysine-arginine group, with no demonstrable interaction between the two groups. Uterine uptakes did not show clear evidence of saturability and inhibitory interactions, suggesting a large transport capacity and low transporter affinity on the maternal surface of the trophoblast. We conclude that the transport of any given amino acid from placenta to fetus is a function of both its own maternal concentration and the maternal concentration of inhibitory amino acids.     

Integument pattern formation involves genetic and epigenetic controls: feather arrays simulated by digital hormone models

Pattern formation is a fundamental morphogenetic process. Models based on genetic and epigenetic control have been proposed but remain controversial. Here we use feather morphogenesis for further evaluation. Adhesion molecules and/or signaling molecules were first expressed homogenously in feather tracts (restrictive mode, appear earlier) or directly in bud or inter-bud regions ( de novo mode, appear later). They either activate or inhibit bud formation, but paradoxically colocalize in the bud. Using feather bud reconstitution, we showed that completely dissociated cells can reform periodic patterns without reference to previous positional codes. The patterning process has the characteristics of being self-organizing, dynamic and plastic. The final pattern is an equilibrium state reached by competition, and the number and size of buds can be altered based on cell number and activator/inhibitor ratio, respectively. We developed a Digital Hormone Model which consists of (1) competent cells without identity that move randomly in a space, (2) extracellular signaling hormones which diffuse by a reaction-diffusion mechanism and activate or inhibit cell adhesion, and (3) cells which respond with topological stochastic actions manifested as changes in cell adhesion. Based on probability, the results are cell clusters arranged in dots or stripes. Thus genetic control provides combinational molecular information which defines the properties of the cells but not the final pattern. Epigenetic control governs interactions among cells and their environment based on physical-chemical rules (such as those described in the Digital Hormone Model). Complex integument patterning is the sum of these two components of control and that is why integument patterns are usually similar but non-identical. These principles may be shared by other pattern formation processes such as barb ridge formation, fingerprints, pigmentation patterning, etc. The Digital Hormone Model can also be applied to swarming robot navigation, reaching intelligent automata and representing a self-re-configurable type of control rather than a follow-the-instruction type of control.