The role of environmental factors for the composition of microbial communities of saline lakes in the Novosibirsk region (Russia)

Background

Nothing is currently known about microbial composition of saline lakes of the Novosibirsk region and its dependence on physical-chemical parameters of waters. We studied the structure of microbial communities of saline lakes of the Novosibirsk region and the effect of physical-chemical parameters of waters on microbial communities of these lakes.

Results

According to the ion content, the lakes were classified either as chloride or chloride-sulfate types. Water salinity ranges from 4.3 to 290 g L⁻¹. Many diverse microbial communities were found. Filamentous and colonial Cyanobacteria of the genera Scytonema, Aphanocapsa, and/or filamentous Algae dominated in littoral communities. Spatial and temporal organization of planktonic microbial communities and the quantities of Archaea and Bacteria were investigated using fluorescent in situ hybridization. We have found that the dominant planktonic component is represented by Archaea, or, less frequently, by Bacteria. Various phylogenetic groups (Bacteria, Archaea, Algae, and Cyanobacteria) are nonuniformly distributed. The principal component analysis was used to detect environmental factors that affect microorganism abundance. We found the principal components responsible for 71.1 % of the observed variation. It was demonstrated that two-block partial least squares was a better method than principal component analysis for analysis of the data. We observed general relationships between microbial abundance and water salinity.

Conclusions

We have performed the first-ever study of the structure of the microbial communities of eleven saline lakes in the Novosibirsk region along with their physical-chemical parameters of waters. Our study demonstrates that saline lakes in the Novosibirsk region contain a unique microbial communities that may become a prolific source of microorganisms for fundamental and applied studies in various fields of ecology, microbiology, geochemistry, and biotechnology, and deserve further metagenomic investigation.

     

Effect of hydroxychloroquine and characterization of autophagy in a mouse model of endometriosis

In endometriosis, the increased survival potential of shed endometrial cells (which normally undergo anoikis) is suggested to promote lesion development. One mechanism that may alter anoikis is autophagy. Using an autophagic flux inhibitor hydroxychloroquine (HCQ), we identified that it reduces the in vitro survival capacity of human endometriotic and endometrial T-HESC cells. We also identified that HCQ could decrease lesion numbers and disrupt lesion histopathology, as well as increase the levels of peritoneal macrophages and the IP-10 (10 kDa interferon-γ-induced protein) chemokine in a mouse model of endometriosis. We noted that RNA levels of a subset of autophagic markers were reduced in lesions relative to uterine horns from endometriosis-induced (untreated) mice. In addition, the RNA levels of autophagic markers were decreased in uterine horns of endometriosis-induced mice compared with those from controls. However, we noted that protein expression of LC3B (microtubule-associated protein 1 light-chain 3β; an autophagic marker) was increased in uterine horns of endometriosis-induced mice compared with uterine horns of controls. By immunohistochemical staining of a human endometriosis-focused tissue microarray, we observed LC3B expression predominantly in epithelial relative to stromal cells in both eutopic and ectopic endometria. Via transmission electron microscopy, cells from eutopic endometria of endometriosis-induced mice contained more lipid droplets (rather than autophagosomes) compared with uterine horns from controls. Collectively, our findings indicate that the autophagic pathway is dysregulated in both ectopic and eutopic endometrium in a murine model of endometriosis and that HCQ has potential as a therapeutic agent for women afflicted with endometriosis.Endometriosis is a chronic, painful, and debilitating disease in which endometrium-like glandular and stromal cells grow outside the uterine cavity.^{1, 2} It is an inflammatory and estrogen-dependent disease that affects 6–10% of women during their reproductive years and up to 50% of women receiving fertility treatments.³ Sampson''s hypothesis (the most accepted theory) states that shed endometrial tissue during menses reaches the peritoneal cavity by exiting the uterus through the fallopian tubes by retrograde menstruation.^{4, 5, 6} These shed endometrial cells survive, implant, and grow at ectopic locations, developing into endometriotic lesions.^{5, 7}Epithelial cells normally undergo anoikis, a mechanism of programmed cell death, upon detachment from the extracellular matrix.⁸ One mechanism that we propose could potentially alter the anoikis response in endometrial cells is autophagy. This cellular pathway needs to be carefully regulated to maintain cellular homeostasis.^{9, 10} Under conditions of stress, changes in autophagic flux can lead to altered cellular survival.^{9, 10} Autophagy is a complex process that begins with the formation of double-membrane vesicles, termed autophagosomes, which engulf cytoplasmic components. For a comprehensive review of the autophagic pathway, refer to Feng et al.¹⁰ Briefly, autophagosomes fuse with lysosomes to degrade and recycle their cargo comprised of oxidized proteins, lipids, and damaged organelles. Presently, there is limited evidence that autophagy contributes to the development and progression of endometriosis. In a surgical induction model of murine endometriosis, increased expression of ATG9A, an autophagic mediator that is involved in vesicle formation,¹¹ was detected in the eutopic endometria from endometriosis-induced mice.¹² In human endometriomas (ovarian endometriosis), there was a reduction of LC3-II (the conjugated form of LC3) protein compared with control eutopic endometrial tissue.¹³ In contrast, an independent study reported that the protein expression of LC3-II was elevated, while p62 (which binds ubiquitinated cargo for degradation) was decreased in ovarian endometriomas compared with eutopic endometria of disease-free participants.¹⁴Herein, our main aim was to provide further evidence for a role of autophagy in endometriosis development. Specifically, we sought to determine the therapeutic effects of a lysosomotropic agent and known autophagic flux inhibitor, hydroxychloroquine (HCQ),^{15, 16, 17} on human endometriotic cells and in an established mouse model of endometriosis. The results presented herein are of high clinical translational value, as we identify a potential new non-hormonal treatment for this still incurable and common disease.     

Comparative evaluation of fibrinogen and fibrin hydrolysis with plasmin

A high-sensitive method is developed for determining the degree of plasmin-catalyzed fibrinogen hydrolysis by the released amino groups stained with trinitrobenzene sulphoacid. The method permits determining 0.02-0.08 casein units of plasmin. The method made it possible to establish that after streptokinase activation plasmin hydrolyzes equally fibrinogen and fibrin in solution and as gel. When a tissue activator is used, fibrin intensifies significantly the plasminogen activation. Inhibition of plasmin by an inhibitor produced from soya is considerably slowed down in fibrin gel.     

Crossed and uncrossed afferent inputs of mesocerebral neurons of the mollusk Planorbis corneus

Experiments on the isolated ganglionic ring of the freshwater molluskPlanorbis corneus showed that more neurons (30%) in the ipsilateral mesocerebrum respond to stimulation of the left cerebral nerves than to stimulation of the opposite nerves (13%). A similar picture is observed for neurons of the right mesocerebrum, except that 11% of neurons respond to activation of the left cerebral nerves compared with 39% to stimulation of the ipsilateral right cerebral nerves. Ipsilateral connections of nerve of the visceral complex of ganglia are more clearly defined, as is exemplified by the left pallial nerve, during stimulation of which 68% of neurons in the ipsilateral mesocerebrum were activated, compared with 8% in the contralateral right mesocerebrum. Afferent fibers running in the visceral nerves cross at the level of the abdominal ganglion and not of the cerebral commissure, as might be expected from the structure of the ganglionic ring. The mesocerebral neurons themselves do not form synaptic connections between the mesocerebra, and excitation reaching one of them does not therefore induce any effects in the other.A. A. Bogomolets Institute of Physiology, Academy of Sciences of the Ukrainian SSR, Kiev. Translated from Neirofiziologiya, Vol. 5, No. 6, pp. 571–575, November–December, 1973.     

Reaction of glycine with acetoacetate and various properties of the catalyzing enzyme from the rat liver

The enzymic interaction between acetoacetate and glycine which are added outside is established to occur in the tissue homogenates of the liver, kidneys and spleen of rats. The interaction leads to a decrease of the both components in the equivalent quantities. Homogeneous crystalline preparations of the enzyme catalyzing the above mentioned reaction are isolated from the liver tissues and purified. Certain properties of the enzyme are studied.     

Substrate specificity of T5 bacteriophage deoxyribonucleoside monophosphate kinase and its application for the synthesis of [α-<Superscript>32</Superscript>P]d/rNTP

Bacteriophage T5 deoxynucleoside monophosphate kinase (dNMP kinase, EC 2.7.4.13) is shown to catalyze the phosphorylation of both d₂CMP and ribonucleotides AMP, GMP, and CMP, but does not phosphorylate UMP. For natural acceptors of the phosphoryl group, k _m and k _cat were found. The applicability of T5 dNMP kinase as a universal enzyme capable of the phosphorylation of labelled r/dNMP was shown for the synthesis of [α-³²P]rNTP and [α-³²P]dNTP.     

Enzymatic transglycosylation of natural and modified nucleosides by immobilized thermostable nucleoside phosphorylases from Geobacillus stearothermophilus

Natural and modified purine nucleosides have been synthesized using the recombinant thermostable enzymes purine nucleoside phosphorylase II (E. C. 2.4.2.1) and pyrimidine nucleoside phosphorylase (E. C. 2.4.2.2) from Geobacillus stearothermophilus B-2194. The enzymes were produced in recombinant E. coli strains and covalently immobilized on aminopropylsilochrom AP-CPG-170 after heating the cell lysates and the removal of coagulated thermolabile proteins. The resulting preparations of thermostable nucleoside phosphorylases retained a high activity after 20 reuses in nucleoside transglycosylation reactions at 70–75°C with a yield of the target products as high as 96%. Owing to the high catalytic activity, thermal stability, the ease of application, and the possibility of repeated use, the immobilized preparations of thermostable nucleoside phosphorylases are suitable for the production of pharmacologically important natural and modified nucleosides.