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排序方式: 共有71条查询结果,搜索用时 15 毫秒
41.
Daniel Klevebring M?rten Neiman Simon Sundling Louise Eriksson Eva Darai Ramqvist Fuat Celebioglu Kamila Czene Per Hall Lars Egevad Henrik Gr?nberg Johan Lindberg 《PloS one》2014,9(8)
Accurate estimation of systemic tumor load from the blood of cancer patients has enormous potential. One avenue is to measure the presence of cell-free circulating tumor DNA in plasma. Various approaches have been investigated, predominantly covering hotspot mutations or customized, patient-specific assays. Therefore, we investigated the utility of using exome sequencing to monitor circulating tumor DNA levels through the detection of single nucleotide variants in plasma. Two technologies, claiming to offer efficient library preparation from nanogram levels of DNA, were evaluated. This allowed us to estimate the proportion of starting molecules measurable by sequence capture (<5%). As cell-free DNA is highly fragmented, we designed and provide software for efficient identification of PCR duplicates in single-end libraries with a varying size distribution. On average, this improved sequence coverage by 38% in comparison to standard tools. By exploiting the redundant information in PCR-duplicates the background noise was reduced to ∼1/35000. By applying our optimized analysis pipeline to a simulation analysis, we determined the current sensitivity limit to ∼1/2400, starting with 30 ng of cell-free DNA. Subsequently, circulating tumor DNA levels were assessed in seven breast- and one prostate cancer patient. One patient carried detectable levels of circulating tumor DNA, as verified by break-point specific PCR. These results demonstrate exome sequencing on cell-free DNA to be a powerful tool for disease monitoring of metastatic cancers. To enable a broad implementation in the diagnostic settings, the efficiency limitations of sequence capture and the inherent noise levels of the Illumina sequencing technology must be further improved. 相似文献
42.
Ahmed AK Thabet Saeed H Al-Bahlooli Abdulhakeem Al-Kohlani Ahmed Shoja'a 《Virology journal》2010,7(1):1-3
To investigate West Nile virus (WNV) circulation in rural populations in Gabon, we undertook a large serological survey focusing on human rural populations, using two different ELISA assays. A sample was considered positive when it reacted in both tests. A total of 2320 villagers from 115 villages were interviewed and sampled. Surprisingly, the WNV-specific IgG prevalence was high overall (27.2%) and varied according to the ecosystem: 23.7% in forested regions, 21.8% in savanna, and 64.9% in the lakes region. The WNV-specific IgG prevalence rate was 30% in males and 24.6% in females, and increased with age. Although serological cross-reactions between flaviviruses are likely and may be frequent, these findings strongly suggest that WNV is widespread in Gabon. The difference in WNV prevalence among ecosystems suggests preferential circulation in the lakes region. The linear increase with age suggests continuous exposure of Gabonese populations to WNV. Further investigations are needed to determine the WNV cycle and transmission patterns in Gabon. 相似文献
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F A Peverali T Ramqvist R Saffrich R Pepperkok M V Barone L Philipson 《The EMBO journal》1994,13(18):4291-4301
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Plantago exhibit great deal of differences in the breeding system. The reproductive effort calculated on the basis of, (i) dry biomass
of foliar and floral parts and (ii) seed output-weight (mg) per unit leaf area (cm2), exhibits relation with breeding system. The predominantly inbreeding taxa invest higher reproductive effort compared to
their outbreeding allies. In terms of sex allocation strategies, the outbreeding species like P. lanceolata, P. lagopus invest more to the development of floral features and to male functions. On the contrary, inbreeding species such as P. patagonica, P. drummondii, and P. ovata invest greater resources to the female function.
Received 13 April 1998/ Accepted in revised form 6 November 1998 相似文献
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Adem BIC Ahmet AK 《Acta Botanica Sinica》2000,42(8):864-867
Thc pollen grains in the atmosphere of Burdur have been studied for a two-year period(1996through 1997)with a Durham sampler.A total of 11 881 pollen grains belongins to 39 taxa have been identi-fied 相似文献
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