Evidence of genetically diverse virulent mating types of <Emphasis Type="Italic">Phytophthora capsici</Emphasis> from <Emphasis Type="Italic">Capsicum annum</Emphasis> L.

Chili pepper (Capsicum annum L.) is an important economic crop that is severely destroyed by the filamentous oomycete Phytophthora capsici. Little is known about this pathogen in key chili pepper farms in Punjab province, Pakistan. We investigated the genetic diversity of P. capsici strains using standard taxonomic and molecular tools, and characterized their colony growth patterns as well as their disease severity on chili pepper plants under the greenhouse conditions. Phylogenetic analysis based on ribosomal DNA (rDNA), β-tubulin and translation elongation factor 1α loci revealed divergent evolution in the population structure of P. capsici isolates. The mean oospore diameter of mating type A1 isolates was greater than that of mating type A2 isolates. We provide first evidence of an uneven distribution of highly virulent mating type A1 and A2 of P. capsici that are insensitive to mefenoxam, pyrimorph, dimethomorph, and azoxystrobin fungicides, and represent a risk factor that could ease outpacing the current P. capsici management strategies.     

Synthesis,structure-activity relationship and molecular docking studies of 3-O-flavonol glycosides as cholinesterase inhibitors

The prime objective of this research work is to prepare readily soluble synthetic analogues of naturally occurring 3-O-flavonol glycosides and then investigate the influence of various substituents on biological properties of synthetic compounds. In this context, a series of varyingly substituted 3-O-flavonol glycosides have been designed, synthesized and characterized efficiently. The structures of synthetic molecules were unambiguously corroborated by IR, ¹H, ¹³C NMR and ESI-MS spectroscopic techniques. The structure of compound 22 was also analyzed by X-ray diffraction analysis. All the synthetic compounds (21–30) were evaluated for in vitro inhibitory potential against cholinesterase enzymes. The results displayed that most of the derivatives were potent inhibitors of acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) with varying degree of IC₅₀ values. The experimental results were further encouraged by molecular docking studies in order to explore their binding behavior with the active pocket of AChE and BChE enzymes. The experimental and theoretical results are in parallel with one another.     

Identification and expression profiling of a new β-amyrin synthase gene (<Emphasis Type="Italic">GmBAS3</Emphasis>) from soybean

Cyclization of 2,3-oxidosqualene by different oxidosqualene cyclase (OSC) genes is responsible for sapogenin heterogeneity. The very first phase is the conversion of 2,3-oxidosqualene into β-amyrin by β-amyrin synthase (BAS) gene, a member of OSC family, in soy saponin biosynthesis pathway. This paper reports the identification of a new BAS gene (GmBAS3) and its expression pattern in soybean (Glycine max (L.) Merr.). GmBAS3 gene was identified by PCR/RACE method with an open reading frame of 2286 bp nucleotides encoding a 762 amino acid long protein devouring a characteristic QW motif repeated five times and DCTAE motif. GmBAS3 shared 96 and 92% homology with Glycyrrhiza uralensis BAS and Lotus japonicus putative BAS respectively. Expression of the gene was detected by RT-PCR in regard to seedlings age and tissue type. A spatio-temporal expression of GmBAS3 was found in 21-day-old seedlings in the hypocotyls, young leaves and mature leaves but not observed in stem and root tissues. No expression was perceived in 10-day-old seedling. This study also support the premise that β-amyrin synthesis hang on more than one type of BAS genes with there expression in different plant parts at different times.     

Improving magnesium uptake,photosynthesis and antioxidant enzyme activities of watermelon by grafting onto pumpkin rootstock under low magnesium

Background and aims

Magnesium (Mg) is an essential macronutrient that plays an important role in numerous physiological and biochemical processes of plant. However, Mg deficiency commonly occurs worldwide. Watermelon is an important crop that often suffers from Mg deficiency. This study aims to test whether watermelon performance can be improved by grafting onto rootstocks under low Mg and to clarify the underlying physiological mechanism.

Methods

Self-grafted, bottle gourd (Jingxinzhen No.1) and pumpkin (Jingxinzhen No.4) rootstock-grafted plants were treated with three Mg concentrations: 2.0 mM (normal condition), 0.4 mM (moderate stress), and 0.04 mM (severe stress) for 16 days under hydroponic conditions. Ungrafted watermelon and pumpkin were treated with 2.0 mM and 0.04 mM for 12 days.

Results

The growth of the plants was not affected by 0.4 mM Mg; however, plant growth decreased under 0.04 mM Mg in all graft combinations compared with control (2.0 mM Mg). Pumpkin rootstock grafting significantly increased watermelon growth under low Mg stress (0.04 mM Mg), compared with self-grafted and bottle gourd-grafted plants. The Mg²⁺ uptake of watermelon plants was increased by grafting onto pumpkin rootstocks, however, root-to-shoot transport capacity of Mg²⁺ was similar compared with self-grafted plants under 0.04 mM Mg. Gene expression analysis showed that magnesium transporter genes MGT1, MGT3, MGT4, and MGT5 may play an important role in higher Mg²⁺ uptake of pumpkin root. The photosynthetic parameters and activities of superoxide dismutase, peroxidase and catalase were significantly higher, but malonaldehyde (MDA) content were lower in the pumpkin rootstock grafted plants compared with other graft combinations under 0.04 mM Mg.

Conclusion

Our results provide strong evidence that pumpkin rootstock ‘Jinxinzhen No. 4’ grafting can improve watermelon performance under low Mg stress. The enhanced plant performance is attributed to higher root Mg²⁺ uptake and the improvement of photosynthesis and antioxidant enzyme activities.

     

Carnitine metabolism during exercise in patients with peripheral vascular disease

The distribution between carnitine and the acyl derivatives of carnitine reflects changes in the metabolic state of a variety of tissues. Patients with peripheral vascular disease (PVD) develop skeletal muscle ischemia with exertion. This impairment in oxidative metabolism during exercise may result in the generation of acylcarnitines. To test this hypothesis, 11 patients with PVD and 7 age-matched control subjects were evaluated with graded treadmill exercise. Subjects with PVD walked to maximal claudication pain at a peak O2 consumption (VO2) of 19.9 +/- 1.3 ml X kg-1 X min-1 (mean +/- SE). Control subjects were taken to a near-maximal work load at a VO2 of 31.3 +/- 1.0 ml X kg-1 X min-1. In patients with PVD, the plasma concentration of total acid-soluble, long-chain acylcarnitine and total carnitine was increased at peak exercise compared with resting values. Four minutes postexercise, the plasma short-chain acylcarnitine concentration was also increased. In control subjects taken to the higher work load, only the long-chain acylcarnitine concentration was increased at peak exercise. In patients with PVD, plasma short-chain acylcarnitine concentration at rest was negatively correlated with subsequent maximal walking time (r = -0.51, P less than 0.05). In conclusion, acylcarnitines increased in patients with PVD who walked to maximal claudication pain, whereas control subjects did not show equivalent changes even when taken to a higher work load. The relationship between short-chain acylcarnitine concentration at rest and subsequent exercise performance suggests that repeated episodes of ischemia may cause chronic accumulation of short-chain acylcarnitine in plasma in proportion to the severity of disease.(ABSTRACT TRUNCATED AT 250 WORDS)     

Characterization ofAzospirillum and related diazotrophs associated with roots of plants growing in saline soils

Diazotrophs, especially of genusAzospirillum were readily isolated from roots of many plants using semi-solid nitrogen free malate medium (NFM). These isolates formed fine, white sub-surface pellicle in nitrogen-free malate medium within 24h, which gradually moved to the surface, and exhibited high acetylene reduction rates. Using selected cultural and biochemical tests, most of the isolates were identified asAzospirillum brasilense. Four isolates from Kallar grass root surface and one isolate fromAtriplex root interior formed phenotypically a homogenous group. It shared many characteristics with the species of genusAzospirillum except shape. All the biochemical tests performed, categorized them withA. brasilense. However, the shape and the protein profile on SDS polyacrylamide gel electrophoretograms suggested that the group of these five isolates is clearly distinct and differs widely from all the type strains, belonging to various genera.

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Résumé It est apparu facile d'isoler des diazotrophes, principalement du genreAzospirllium à partir de racines de nombreuses plantes et utilisant un milieu malate semisolide exempt d'azote (NFM). Ces isolats forment une pellicule fine et blanche sous la surface dans le milieu malate exempt d'azote, endéans les24h. Ces pellicules ae déplacent progressivement vers la surface et exhibent des vitesses élevées de production d'acétylène. L'emploi de tests de culture sélective ou biochimique, a permis d'identifier la plupart des isolats commeAzospirillum brasilense. Quatre isolats à partir de la surface des racines d'herbe Kallar et un isolat à partir de l'intérieur d'une racine d'Atriplex forment an groupe homogène sur le plan phénotypique. Celui-ci partage de nombreuses caractéristiques avec les espèces du genreAzospirillum excepté la forme. Tous les tests biochimiques exécutés les rangent avecA. brasilense. Toutefois, leur forme ainsi que le profil protéique sur un électrophérogramme sur gel de polyacrylamide-SDS suggèrent que le groupe de cinq isolats est nettement distinct et diffère largement de toutes les souches types, appartenant à de nombreux genres.

     

Apocynin ameliorates NADPH oxidase 4 (NOX4) induced oxidative damage in the hypoxic human retinal Müller cells and diabetic rat retina

Molecular and Cellular Biochemistry - NADPH oxidase (NOX) is a main producers of reactive oxygen species (ROS) that may contribute to the early pathogenesis of diabetic retinopathy (DR). ROS has...     

Accurate prediction of kinase-substrate networks using knowledge graphs

Phosphorylation of specific substrates by protein kinases is a key control mechanism for vital cell-fate decisions and other cellular processes. However, discovering specific kinase-substrate relationships is time-consuming and often rather serendipitous. Computational predictions alleviate these challenges, but the current approaches suffer from limitations like restricted kinome coverage and inaccuracy. They also typically utilise only local features without reflecting broader interaction context. To address these limitations, we have developed an alternative predictive model. It uses statistical relational learning on top of phosphorylation networks interpreted as knowledge graphs, a simple yet robust model for representing networked knowledge. Compared to a representative selection of six existing systems, our model has the highest kinome coverage and produces biologically valid high-confidence predictions not possible with the other tools. Specifically, we have experimentally validated predictions of previously unknown phosphorylations by the LATS1, AKT1, PKA and MST2 kinases in human. Thus, our tool is useful for focusing phosphoproteomic experiments, and facilitates the discovery of new phosphorylation reactions. Our model can be accessed publicly via an easy-to-use web interface (LinkPhinder).     

Response of tomato (Lycopersicon esculentum Mill.) growth to different phosphorous levels and sowing dates

A field trail was carried out at the University of Agriculture Peshawar during spring, 2013 in order to evaluate the effect of different levels of phosphorus fertilizer and various planting times on the growth and development of tomato. The main objective of the research work was to investigate the best sowing time for tomato in combination with suitable dose of P fertilizer in order to get maximum yield of tomato in the climatic conditions of Peshawar. RCB Design with split plot arrangements was used in the trail. The main factor (phosphorous levels of 0, 90, 110, 130) was allotted to main plots while sowing dates in sub plots. A total twelve treatment were replicated thrice. Maximum days to flowering (39.583?days) and fruiting (46.167?days) obtained in the late sowing. Minimum days to flowering (39), minimum days to fruiting (38.778?days) were taken by the early sowing. Maximum number of branches (27.778), maximum fruit length (6.0222), maximum fruit with (6.1667), maximum fruit yield (24.653?tons?ha^?1) was produced when the plot fertilize with 130?kg?P?ha^?1. Maximum number of fruit?plant^?1 (29.778) were produced with application of 130?kg?P?ha^?1, minimum number of fruits (23.667?cm), fruit width (3.778?cm), fruit length (4.3667?cm), plant height (56.300?cm) were obtained from the controlled treatment. Among the various treatment studied in experiment, it is concluded that early planting of the tomato in the summer season i.e. in the start of March and the use of higher dose of P (130?kg?P?ha^?1) is very beneficial for the excellent growth, development and yield of tomato crop.