A robust fed-batch feeding strategy for optimal parameter estimation for baker's yeast production

Parameter identification of structured models is often a problem in biotechnology, because the poor data situation and the number of unknown parameters only allow for inaccurate estimates. But often only a subset of all kinetic parameters of the model are of interest for production purposes, e.g. for fed-batch cultivation. These parameters should be estimated with a given accuracy. In addition, the experiments for information acquisition with respect to these parameters should be as simple as possible and should consider some practical restrictions. In this contribution a fed-batch feeding strategy is proposed to allow for an accurate estimation of yield and of critical growth rate of baker's yeast. The feeding also allows for economic and stereotyped use of staff and equipment and is therefore suitable for routine use in screening of strains and media. The overall pattern is similar to that one, usually used in production scale to minimize errors by limited model validity. After an initial phase for achieving a reproducible state three different growth rates are adjusted to cover the range of possible critical growth rates. From biomass and ethanol measurements yield and critical growth rate can be estimated with an accuracy of about 2.1%. The fermentation pattern ends up with a constant feeding rate to simulate a limited oxygen transfer rate and to allow for an uptake of residual sugar and ethanol before a dough test can be carried out. Beside experimental results simulations and sensitivity analyses are shown.List of Symbols P ethanol concentration - S substrate concentration - S _f substrate concentration in feed - T fermentation time - V fermenter volume - X biomass concentration - C measurement error covariance matrix - F Fisher information matrix - X state variables - Y output variables - X _p state sensitivity functions with respect to parameters - Y _p output sensitivity functions - e eigenvectors - k vector of limitation and inhibition parameters - n number of observations - q _in feeding stream - q _b stream for samples and ammonia feed - r vector of specific turnover rates - y vector of yields - specific weight - eigenvalues - specific growth rate - _set exponent in exponential feeding - standard deviation Dedicated to the 65th birthday of Professor Fritz Wagner.A. O. Ejiofor and B. O. Solomon are grateful to the Alexander von Humboldt Stiftung for granting them fellowships and to GBF for providing all the materials necessary for their successful research stay in Germany.     

A somatic cell hybrid map of the long arm of human chromosome 17, containing the familial breast cancer locus (BRCA1).

We describe a detailed somatic cell hybrid map of human chromosome 17q11.2-q23, containing the familial breast and ovarian cancer locus (BRCA1) and highly informative closely linked markers. An X-irradiation panel of 38 hamster/human and mouse/human hybrids with fragments of chromosome 17 was generated and characterized with 22 STS markers from this chromosome. A detailed map of 61 probes onto chromosome 17q, subdividing the chromosome arm into 25 regions, was done by using a panel of hybrids with well-defined breakpoints and nine chromosome-mediated gene transfectants. Our localization of RARA, TOP2, EDH17B1 and 2, and possibly WNT3, between THRA1 and D17S181, two markers known to flank BRCA1, suggests that any of these is a potential candidate for the BRCA1 locus. The marker D17S579 (Mfd188), which is believed to be very close to BRCA1, maps closest to the EDH17B genes.     

Media optimization studies for glucose isomerase production by arthrobacter species

Media optimization studies are carried out with the objective of maximising glucose isomerase production by Arthrobacter sp. The recommended media consists of 1.0% (w/v) xylose, 1.0% peptone, 0.5% yeast extract, 0.025% MgSO₄·7H₂O, 0.6% (NH₄)₂HPO₄ and 0.2% KH₂PO₄. Activity of the enzyme produced in this media is 11.2 units/ml. Growth cycle for batch cultivation is studied and the lag period is 2 hours, followed by exponential phase extending upto 32 hours.     

Citric acid production

Techniques for possible higher and rapid production of citric acid from the well known industrial medium i.e. molasses has been reported using Aspergillus niger. This includes optimization of the total reducing sugar (TRS) and nutrients like nitrogen and phosphorous. The long and unproductive lag periods normally associated with this type of fermentation has been reduced. These strategies are discussed in detail. Dr. M. Chellapandian is thankful to the Council of Scientific and Industrial Research, New Delhi, for the award of research associateship.     

Role of some riparian wetland plants in reducing erosion of organic carbon and selected cations

Five riparian herbaceous plants, Leonotis nepetaefolia, Cassia tora, Ageratum conyzoides, Parthenium hysterophorus and Sida acuta, dominant on the banks of the Rihand river at Renukoot (India), were selected to assess experimentally their quantitative role in conserving organic-C, Na, K and Ca. Young seedlings from the river bank were planted on sloping experimental plots made of alluvial soil. Simulated rainfall totalling 42.5 mm was applied at 300 mm h⁻¹ on five vegetated and one bare plots. Runoff water and eroded soil were collected from each experimental plot in artificial reservoirs and their quantities were measured. The soil conservation value of the five selected species ranged between 33 and 84% while the water conservation value varied between 19 and 50%. The overall nutrient conservation value, based on the losses in runoff water and eroded soil taken together, varied from 30 to 83% for organic-C, 19 to 78% for Na, 13 to 72% for K and 29 to 52% for Ca under different species. Loss of these four nutrients in response to 42.5 mm simulated rainfall was much higher than their input through rainfall. Loss value for the nutrients were in following order: organic-C > Ca > K > Na. The fraction of organic-C transported down the slope was higher in eroded soil (averaging 73%) and of exchangeable bases in runoff water (averaging 86% for Na, 82% for K and 90% for Ca). Flow-weighted concentrations of all the studied nutrients were consistently greater from bare stands. Number of fine roots was found to play greater role in the case of organic-C (92%; p < 0.01) and Na (70%; p < 0.05) runoff and their conservation by different plant species but canopy cover played greater role for K (58%; p < 0.08) and Ca (90%; p < 0.01).     

Poly(ADP-Ribose) Synthetase Activation: An Early Indicator of Neurotoxic DNA Damage

Abstract: DNA damage activates a nuclear enzyme poly(ADP-ribose) synthetase (PARS) that facilitates DNA repair by adding multiple ADP-ribose groups to nuclear proteins such as histones and PARS itself. N -Methyl- d -aspartate neurotoxicity may involve DNA damage excessively activating PARS to deplete its substrate NAD, as PARS inhibitors prevent this toxicity. We now show that PARS is rapidly and markedly activated in PC12 cells following treatment with neurotoxic agents, including the amyloid β-protein, hydrogen peroxide, N -methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP), and its active metabolite N -methyl-4-phenylpyridine (MPP⁺). With MPP⁺, PARS activity is increased fivefold in 1 h and 20-fold by 3 h. By contrast, direct measurement of DNA damage by the terminal-deoxynucleotidyl transferase-mediated dUTP-biotin nick end-labeling assay shows no significant increase by 3 h and less than fourfold by 24 h. These findings indicate that PARS activity can provide a simple, sensitive, and early index of DNA damage following neurotoxic insults.     

A Genetic Analysis of the 63e-64a Genomic Region of Drosophila Melanogaster: Identification of Mutations in a Replication Factor C Subunit

We have performed and F(2) genetic screen to identify lethal mutations within the 63E-64A genomic region. We have isolated 122 mutations in 20 different complementation groups. Of these groups, 16 are represented by multiple alleles. We have also established that the Rop and Ras2 genes are located within the 63E-64A genomic domain at 64A10,11. We have sequenced 10.2 kb of DNA surrounding this gene pair and find that in addition to Rop and Ras2 there is another gene located within this DNA sequence. The gene product, which we have named Rfc40, shows 68% identity to the 40-kDa subunit of replication factor C. We find that the members of one complementation group (13 alleles) derived from our screen correspond to mutations in the Rop gene, whereas the members of another (five alleles) correspond to mutations in the Rfc40 gene. In addition we have isolated 11 new mutant alleles of the disembodied gene.