Hepatic Gene Expression in Morbidly Obese Women: Implications for Disease Susceptibility

The objective of this study was to determine the molecular bases of disordered hepatic function and disease susceptibility in obesity. We compared global gene expression in liver biopsies from morbidly obese (MO) women undergoing gastric bypass (GBP) surgery with that of women undergoing ventral hernia repair who had experienced massive weight loss (MWL) following prior GBP. Metabolic and hormonal profiles were examined in MO vs. MWL groups. Additionally, we analyzed individual profiles of hepatic gene expression in liver biopsy specimens obtained from MO and MWL subjects. All patients underwent preoperative metabolic profiling. RNAs were extracted from wedge biopsies of livers from MO and MWL subjects, and analysis of mRNA expression was carried out using Affymetrix HG‐U133A microarray gene chips. Genes exhibiting greater than twofold differential expression between MO and MWL subjects were organized according to gene ontology and hierarchical clustering, and expression of key genes exhibiting differential regulation was quantified by real‐time–polymerase chain reaction (RT‐PCR). We discovered 154 genes to be differentially expressed in livers of MWL and MO subjects. A total of 28 candidate disease susceptibility genes were identified that encoded proteins regulating lipid and energy homeostasis (PLIN, ENO3, ELOVL2, APOF, LEPR, IGFBP1, DDIT4), signal transduction (MAP2K6, SOCS‐2), postinflammatory tissue repair (HLA‐DQB1, SPP1, P4HA1, LUM), bile acid transport (SULT2A, ABCB11), and metabolism of xenobiotics (GSTT2, CYP1A1). Using gene expression profiling, we have identified novel candidate disease susceptibility genes whose expression is altered in livers of MO subjects. The significance of altered expression of these genes to obesity‐related disease is discussed.     

Juglone promotes shooting and inhibits rooting in leaf explants of in vitro raised tomato (Solanum lycopersicum L. var. Pusa Ruby) seedlings

In Vitro Cellular & Developmental Biology - Plant - Juglone is an inhibitor of choline acetyltransferase, an enzyme that catalyzes the synthesis of acetylcholine. Previous works have shown the...     

Elastic Properties and Heterogeneous Stiffness of the Phi29 Motor Connector Channel

The DNA packaging motor of the bacteriophage ϕ29, comprising head-tail connector, ATPase, and pRNA, transports the viral DNA inside the procapsid against pressure differences of up to ∼60 atm during replication. Several models for the DNA packaging mechanism have been proposed, which attribute different roles to the connector, and require specific mechanical properties of the connector. To characterize these properties at the atomic level, and to understand how the connector withstands this large pressure, we have carried out molecular dynamics simulations of the whole connector both in equilibrium and under mechanical stress. The simulations revealed a quite heterogeneous distribution of stiff and soft regions, resembling that of typical composite materials that are also optimized to resist mechanical stress. In particular, the conserved middle α-helical region is found to be remarkably stiff, similar only to structural proteins forming viral shell, silk, or collagen. In contrast, large parts of the peripheral interface to the ϕ29 procapsid turned out to be rather soft. Force probe and umbrella sampling simulations showed that large connector deformations are remarkably reversible, and served to calculate the free energies required for these deformations. In particular, for an untwisting deformation by 12°, as postulated by the untwist-twist model, more than four times’ larger energy is required than is available from hydrolysis of one ATP molecule. Combined with previous experiments, this result is incompatible with the untwist-twist model. In contrast, our simulations support the recently proposed one-way revolution model and suggest in structural terms how the connector blocks DNA leakage. In particular, conserved loops at the rim of the central channel, which are in direct contact with the DNA, are found to be rather flexible and tightly anchored to the rigid central region. These findings suggest a check-valve mechanism, with the flexible loops obstructing the channel by interacting with the viral DNA.     

Impact of elevated CO2 concentration on ultrastructure of pericarp and composition of grain in three Triticum species of different ploidy levels

Triticum species of three ploidies were grown under ambient (375 μl/l) or elevated (FACE, 550 μl/l) CO₂ concentration [CO₂] to evaluate their response to CO₂ enrichment. The consistent effect of elevated CO₂ was an increase in concentration of starch and decrease in concentration of protein in the grain. Transmission electron micrographs revealed an increase in width and area of chloroplasts, and change in shape from elliptical in ambient to round in elevated [CO₂]. There was a corresponding increase in starch grain size and number in chloroplasts. The large starch grains distributed among thylakoids resulted in separation and distortion of internal membrane system in chloroplasts. The level of response was different in species of different ploidy levels. Maximum increase in starch concentration, and least decrease in protein concentration, was observed in Triticum dicoccoides, which also proved the most suitable species in terms of C:N ratio.     

Ichnology of the Early Cambrian Tal Group,Nigalidhar Syncline,Lesser Himalaya,India

Though trace fossils have been recorded from the Tal Group of the Krol-Tal Belt by earlier workers, most of the records are at generic level only. This paper describes, in detail, 24 ichnospecies from 20 ichnogenera, some of which are being reported for the first time, from the Ganog and Koti Dhaman sections of the Nigalidhar Syncline, H.P. Based on the ichnostratigraphic and ichnofabric analyses these ichnofossils have been categorized into three ichnoassemblages, namely Palaeophycus-Phycodes, Daedalus-Phycodes, and Cruziana Ichnoassemblages. An attempt has also been made for correlation of the Tal sections with other Precambrian-Cambrian sections of the world.     

Novel selective biocatalytic deacetylation studies on dihydropyrimidinones

Five racemic ethyl 4-(3/4-acetoxyphenyl)-6-methyl-3,4-dihydropyrimidin-2-one-5-carboxylates have been synthesized by acetylation of corresponding hydroxy analogues, which in turn have been synthesized under microwave condition by multi-component Biginelli cyclocondensation of ethyl acetoacetate, urea and the corresponding hydroxybenzaldehydes in the presence of ferric chloride. These dihydropyrimidinones have been subjected to biocatalytic resolution using acetoxyl group on the phenyl ring as remote handle; Novozyme^®-435, an immobilized lipase from Candida antarctica in THF:DIPE has been found to catalyze the deacetylation reactions in an enantioselective fashion.     

Modulations in ionic composition and ATPase system in the brain of albino rat under induced propoxur toxicity

Modulations in ionic composition were seen in the rat brain during propoxur treatment indicating an impairment in the electric activity of neurons, oxygen consumption, ATPase system, disruption in the movement of ions across ionic pumps and synaptic transmission. The specific activity levels of ATPases were also altered confirming that the impairment in the ATPase system might be due to the ionic imbalances under propoxur stress.