Correlations between forest stand diversity and landscape pattern in Otepää Nature Park, Estonia

Rank correlations between tree species diversity in forest stands and parameters of landscape pattern were calculated using data from 4933 locations in Otepää Nature Park. Stand diversity was characterised by the number of tree species in the stand formula and by the index of dominance of tree species’ coverage. Landscape diversity was characterised by locally calculated pattern parameters from three categorical map layers (1:10 000 base map, 1:10 000 soil map, combination of these maps) and from six numerical variables (elevation, slope angle, four channels of a Landsat 7 ETM image).A weak trend appeared for more diverse forest stands to be located in more diverse landscapes according to the base map. Forest stand diversity is also higher on steeper slopes and in places surrounded by slopes of varying steepness. The correlation between landscape diversity and biodiversity depends on the radius of the kernel in which landscape characteristics are calculated. Evidence of an indicative neighbourhood could be seen in many spatial relationships. The spatial correlation between stand diversity and indices calculated from the base map was most visible at distances ranging from 400 to 500 m; surface elevation and its variation correlates with stand diversity at distances of 100–200 m. Some relationships between forest diversity and landscape diversity that had a different sign of correlation in proximate and distant kernels can be interpreted as a need to standardise local landscape indices with the index values in a wider neighbourhood as a reference.     

Calcium supplementation of breeding birds: directions for future research

Calcium is an essential nutrient for avian reproduction. Calcium-rich foods are consumed by breeding birds for production of eggshells and for provisioning chicks that are mineralizing skeletal tissues. A number of studies have documented calcium-limited reproduction, and calcium supplementation has been employed over the last decade to demonstrate degrees, causes and consequences of calcium limitation. However, supplementation studies have produced equivocal findings resulting from an absence of calcium limitation in the study species, a poorly designed supplementation procedure or both. Prior to effective calcium supplementation, many factors need to be considered. Calcium-limited breeding in birds can only be detected by monitoring breeding attempts for more than one year and by ensuring that the measured breeding parameters are sensitive to calcium availability. Natural calcium availability needs to be estimated, and daily calcium budgets for the appropriate reproductive stages determined for the study species. Most crucially, if calcium limitation of breeding is caused by secondary calcium limitation (e.g. through heavy metal toxicity), calcium supplementation will probably be ineffective. Effective calcium supplementation will then be achieved through careful planning – a study over several years using appropriate supplements (i.e. naturally occurring ones used by breeding birds), applied at the appropriate time of year (i.e. prelaying and/or chick-rearing phases) and using a response variable that is highly sensitive to calcium availability. If properly planned and performed, calcium supplementation is a cost-effective and potent tool for the study of bird breeding biology.     

An approach to improve methanogenesis through the use of mixed cultures isolated from biogas digester

Biogas production has been shown to be inhibited by branched chain fatty acids (isobutyric, isovaleric) produced in the digester by cellulolytic organisms. Performance of these mixed cellulolytic cultures isolated at 25°C (C₂₅) and at 35° (C₃₅) in a batch digester using cattle manure confirmed that C₃₅, which forms mainly straight chain fatty acids from cellulose was more suitable for use as an inoculum than C₂₅ which formed predominantly branched chain fatty acids. Reconstitution of cellulolytic culture C₃₅ and mixed methanogens M₃₅ almost doubled both the amount and rate of methane production. Cellulolytic culture was useful in pretreatment of water hyacinth prior to its use as a substrate for methane generation A method for preservation and transportation of mixed cellulolytic culture for use as an inoculum in the digester is described.     

Increased Blood Levels of Growth Factors,Proinflammatory Cytokines,and Th17 Cytokines in Patients with Newly Diagnosed Type 1 Diabetes

The production of several cytokines could be dysregulated in type 1 diabetes (T1D). In particular, the activation of T helper (Th) type 1 (Th₁) cells has been proposed to underlie the autoimmune pathogenesis of the disease, although roles for inflammatory processes and the Th₁₇ pathway have also been shown. Nevertheless, despite evidence for the role of cytokines before and at the onset of T1D, the corresponding findings are inconsistent across studies. Moreover, conflicting data exist regarding the blood cytokine levels in T1D patients. The current study was performed to investigate genetic and autoantibody markers in association with the peripheral blood cytokine profiles by xMap multiplex technology in newly diagnosed young T1D patients and age-matched healthy controls. The onset of young-age T1D was characterized by the upregulation of growth factors, including granulocyte macrophage-colony stimulating factor (GM-CSF) and interleukin (IL)-7, the proinflammatory cytokine IL-1β (but not IL-6 or tumor necrosis factor [TNF]-α), Th₁₇ cytokines, and the regulatory cytokines IL-10 and IL-27. Ketoacidosis and autoantibodies (anti-IA-2 and -ZnT8), but not human leukocyte antigen (HLA) genotype, influenced the blood cytokine levels. These findings broaden the current understanding of the dysregulation of systemic levels of several key cytokines at the young-age onset of T1D and provide a further basis for the development of novel immunoregulatory treatments in this disease.     

SH3 domain-mediated recruitment of host cell amphiphysins by alphavirus nsP3 promotes viral RNA replication

Among the four non-structural proteins of alphaviruses the function of nsP3 is the least well understood. NsP3 is a component of the viral replication complex, and composed of a conserved aminoterminal macro domain implicated in viral RNA synthesis, and a poorly conserved carboxyterminal region. Despite the lack of overall homology we noted a carboxyterminal proline-rich sequence motif shared by many alphaviral nsP3 proteins, and found it to serve as a preferred target site for the Src-homology 3 (SH3) domains of amphiphysin-1 and -2. Nsp3 proteins of Semliki Forest (SFV), Sindbis (SINV), and Chikungunya viruses all showed avid and SH3-dependent binding to amphiphysins. Upon alphavirus infection the intracellular distribution of amphiphysin was dramatically altered and colocalized with nsP3. Mutations in nsP3 disrupting the amphiphysin SH3 binding motif as well as RNAi-mediated silencing of amphiphysin-2 expression resulted in impaired viral RNA replication in HeLa cells infected with SINV or SFV. Infection of Balb/c mice with SFV carrying an SH3 binding-defective nsP3 was associated with significantly decreased mortality. These data establish SH3 domain-mediated binding of nsP3 with amphiphysin as an important host cell interaction promoting alphavirus replication.     

Hematological health state indices predict local survival in a small passerine bird, the great tit (Parus major)

In birds, it has been shown that reproductive effort may impair parental condition, while the relation of different condition indices to subsequent survival is still poorly understood. In this study, we measured body mass and various hematological condition indices in breeding great tits in relation to local survival. Number and quality of nestlings and the occurrence of second broods, potentially reflecting parents' breeding effort, were also considered in analyses. The great tits, both male and female, that returned the following year had had a higher albumin/globulin ratio, lower plasma globulin concentration, and a lower heterophile/lymphocyte ratio during breeding in the preceding year, compared to those who did not return. Surviving males (but not females) also had had a higher level of circulating lymphocytes, compared to nonsurvivors. There was no correlation between breeding effort and survival. We conclude that better immunological state and lower stress in great tits during breeding were positively related to their survival probability.     

Adaptive Dynamics of Altruistic Cooperation in a Metapopulation: Evolutionary Emergence of Cooperators and Defectors or Evolutionary Suicide?

We investigate the evolution of public goods cooperation in a metapopulation model with small local populations, where altruistic cooperation can evolve due to assortment and kin selection, and the evolutionary emergence of cooperators and defectors via evolutionary branching is possible. Although evolutionary branching of cooperation has recently been demonstrated in the continuous snowdrift game and in another model of public goods cooperation, the required conditions on the cost and benefit functions are rather restrictive, e.g., altruistic cooperation cannot evolve in a defector population. We also observe selection for too low cooperation, such that the whole metapopulation goes extinct and evolutionary suicide occurs. We observed intuitive effects of various parameters on the numerical value of the monomorphic singular strategy. Their effect on the final coexisting cooperator–defector pair is more complex: changes expected to increase cooperation decrease the strategy value of the cooperator. However, at the same time the population size of the cooperator increases enough such that the average strategy does increase. We also extend the theory of structured metapopulation models by presenting a method to calculate the fitness gradient in a general class of metapopulation models, and try to make a connection with the kin selection approach.