Impacts of variations in elemental nutrient concentration of Chardonnay musts on <Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis> fermentation kinetics and wine composition

Chardonnay, being the predominant white wine-grape cultivar in the Australian wine sector, is subject to widely varying winemaking processes with the aim of producing a variety of wine styles. Therefore, juice composition might not always be ideal for optimal fermentation outcomes. Our aim was to better understand the composition of Chardonnay juice and how compositional parameters impact on fermentation outcomes. This was achieved through a survey of 96 commercially prepared Chardonnay juices during the 2009 vintage. Common juice variables were estimated using near infrared spectroscopy, and elemental composition was determined using radial view inductively coupled plasma optical emission spectrometry. The influence of elemental composition on fermentation outcomes was assessed by fermentation of a defined medium formulated to reflect the composition and range of concentrations as determined by the juice survey. Yeast (Saccharomyces cerevisiae) strain effects were also assessed. Key parameters influencing fermentation outcomes were verified by laboratory scale fermentation of Chardonnay juice. This exploration of Chardonnay juice identified interactions between juice pH and potassium concentration as key factors impacting on fermentation performance and wine quality. Outcomes differed depending on yeast strain.     

Bridging global and microregional scales: ploidy distribution in Pilosella echioides (Asteraceae) in central Europe

Background and Aims

A detailed knowledge of cytotype distribution can provide important insights into the evolutionary history of polyploid systems. This study aims to explore the spatial distribution of different cytotypes in Pilosella echioides at various spatial scales (from the whole distributional range to the population level) and to outline possible evolutionary scenarios for the observed geographic pattern.

Methods

DNA-ploidy levels were estimated using DAPI flow cytometry in 4410 individuals of P. echioides from 46 populations spread over the entire distribution range in central Europe. Special attention was paid to the cytotype structure in the most ploidy-diverse population in south-west Moravia.

Key Results

Five different cytotypes (2x, 3x, 4x, 5x and 6x) were found, the last being recorded for the first time. Although ploidy-uniform (di- or tetraploid) sites clearly prevailed, nearly one-quarter of the populations investigated harboured more (up to all five) cytotypes. Whereas penta- and hexaploids constituted only a minority of the samples, a striking predominance of the triploid cytotype was observed in several populations.

Conclusions

The representative sampling confirmed previous data on cytotype distribution, i.e. the spatial aggregation of mixed-ploidy populations in south-west Moravia and Lower Austria and the predominance of ploidy-uniform populations in other parts of the area investigated. Recurrent origin of polyploids from diploid progenitors via unreduced gametes and their successful establishment are considered the key factors promoting intrapopulational ploidy mixture (‘primary hybrid zones’). As an alternative to the generally accepted theory of cytotype co-existence based on the development of different means of inter-ploidy reproductive isolation, it is suggested that a long-term ploidy mixture can also be maintained in free-mating populations provided that the polyploids originate with a sufficient frequency. In addition, the prevalence (or subdominance) of the triploid cytotype in several mixed-ploidy populations represents the first evidence of such a phenomenon in plant systems with exclusively sexual reproduction.     

Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana

Multistep phosphorelay (MSP) signaling mediates responses to a variety of important stimuli in plants. In Arabidopsis MSP, the signal is transferred from sensor histidine kinase (HK) via histidine phosphotransfer proteins (AHP1–AHP5) to nuclear response regulators. In contrast to ancestral two‐component signaling in bacteria, protein interactions in plant MSP are supposed to be rather nonspecific. Here, we show that the C‐terminal receiver domain of HK CKI1 (CKI1_RD) is responsible for the recognition of CKI1 downstream signaling partners, and specifically interacts with AHP2, AHP3 and AHP5 with different affinities. We studied the effects of Mg²⁺, the co‐factor necessary for signal transduction via MSP, and phosphorylation‐mimicking BeF₃^? on CKI1_RD in solution, and determined the crystal structure of free CKI1_RD and CKI1_RD in a complex with Mg²⁺. We found that the structure of CKI1_RD shares similarities with the only known structure of plant HK, ETR1_RD, with the main differences being in loop L3. Magnesium binding induces the rearrangement of some residues around the active site of CKI1_RD, as was determined by both X‐ray crystallography and NMR spectroscopy. Collectively, these results provide initial insights into the nature of molecular mechanisms determining the specificity of MSP signaling and MSP catalysis in plants.     

Fine-scale dynamics of rhizomes in a grassland community

Spatial dynamics in grassland communities are constrained by the belowground spatial distribution of roots and rhizomes. Their dynamics are difficult to measure as underground data collection tends to be destructive and cannot be repeated at the same plot over time. We investigated rhizome dynamics indirectly by examining rhizome spatial structure on long‐term grassland study plots where aboveground shoot counts have been recorded using a fine‐scale grid over nine years. Number of rhizome apical ends, basal ends and total rhizome length of both live and dead rhizomes were obtained from the data by scanning rhizomes and processing them by GIS vectorization. These rhizome variables were correlated with the above‐ground shoot counts in grid cells over varying temporal lags. There was a general decrease in the intensity of correlation between live rhizomes and shoot counts with increasing time lags. Correlation of dead rhizomes increased with increasing time lag, reaching a maximum after several years, and then declined. Species differed strongly in the change of rhizome‐shoot counts correlation over varying time lags. These differences were used to infer rhizome growth dynamics, namely rhizome growth rate and lifespan, and rhizome mean decomposition time. The species involved differed in all these traits. Mean rhizome growth rate ranged from 0.2 (Polygonum bistorta) to 3.3 cm ur^?1 (Deschampsia flexuosa); mean rhizome lifespan ranged from 5 yr (Anthoxanthum alpinum) to over 8 yr (Nardus stricta) and mean decomposition time from one growing season (Anthoxanthum) to 7 yr (Polygonum). Presence of dead rhizomes below living rhizomes or aboveground shoots was taken as an indication of fine‐scale replacements between species. These were highly non‐random, with some species pairs replacing significantly more frequently. These differences in rhizome growth parameters underlie different strategies of horizontal growth and dieback between species. These can serve as one of the mechanisms of species replacements and contribute to the fine‐scale coexistence of species.     

Ovarian cancer is associated with changes in glycosylation in both acute-phase proteins and IgG

Ovarian cancer is the fourth most common cancer in women in the Western world. In a pilot scale study, we highlight changes in the total serum glycome of patients with advanced ovarian cancer that might shed insight into disease pathogenesis. These changes include increases in levels of core fucosylated, agalactosyl biantennary glycans (FA2) and sialyl Lewis x (SLe(x)). To investigate further which proteins contribute to these alterations, we developed technology to analyze simultaneously the glycosylation of protein glycoforms contained in single spots excised from a 2D gel (<1 ng protein). The acute-phase proteins, haptoglobin, alpha1-acid glycoprotein, and alpha1-antichymotrypsin from patients contained elevated levels of subsets of glycoforms containing SLe(x). We also established that IgG heavy chains from patients contained twice the level of FA2 compared with healthy controls. Serum CA125 is the only biomarker that is used routinely, and there is a need for complementary markers that will improve both sensitivity and specificity. There was some preliminary indication that combinations of changes in the serum glycome might improve the separation of ovarian cancer and benign tumors; however, a larger study using data receiver operating characteristic curves will be required to draw any firm conclusions.     

Impact of spruce forest and grass vegetation cover on soil micromorphology and hydraulic properties of organic matter horizon

Two organic matter horizons developed under a spruce forest and grass vegetation were chosen to demonstrate the impact of a different vegetation cover on the micromorphology, porous system and hydraulic properties of surface soils. Micromorphological studies showed that the decomposed organic material in the organic matter horizon under the grass vegetation was more compact compared to the decomposed organic material in the organic matter horizon under the spruce forest. The detected soil porous system in the organic matter horizon under the spruce forest consisted of two clusters of pores with different diameters that were highly connected within and between both clusters. The soil porous system in the organic matter horizon under the grass vegetation consisted of one cluster of pores with the larger diameters and isolated pores with the smaller diameter. The retention ability of the organic matter horizon under the grass vegetation was higher than the retention ability of the organic matter horizon under the spruce forest. Presented at the International Conference on Bioclimatology and Natural Hazards, Poľana nad Detvou, Slovakia, 17–20 September 2007.     

Fungal Keratitis Caused by Colletotrichum dematium: Case Study and Review

Mycopathologia - Colletotrichum species are known as important pathogens of plants with an impact on crop production. Some of these species are also known as a cause of rare ophthalmic infections...     

Outbreak of Fungal Endophthalmitis Due to Fusarium oxysporum Following Cataract Surgery

Outbreak of exogenous Fusarium endophthalmitis after cataract surgery was evaluated. Twenty patients developed postoperative endophthalmitis. In 19 eyes, pars plana vitrectomy (PPV) was performed, in 14 cases (74 %) with primary intraocular lens explantation. In one case, the PPV was not performed because of poor general condition of the patient. Symptoms of endophthalmitis (damaged vision, iritis, tyndallization in anterior chamber, hypopyon) occurred at intervals of 16–79 days (mean 31.3 days). Fungal etiology was documented in 12 eyes (60 %). Fusarium oxysporum was evidenced by culture and/or microscopy and confirmed by PCR and sequencing analysis. Eighteen (90 %) patients were treated with oral voriconazole (400 mg/day) for a period of 4–6 weeks. The final visual acuity was 6/15 in 1 case (5 %), 6/60 and worse in 17 eyes (85 %), and in 2 cases (10 %), enucleation had to be performed. Viscoelastic filling material was suggested the most likely source of infection. Endophthalmitis caused by Fusarium spp. are a potentially big threat for patients with serious impact on vision. Successful management of the infection is highly dependent on early diagnosis including species identification and antifungal susceptibility testing, and on aggressive and long-term treatment.