Terrestrial insect bioerosion and the possibilities of its fossilization (Holocene to recent,Czech republic)

Cylindrical tunnels, representing bee's nests, are present at and immediately beneath exposed surfaces of Late Cretaceous castellated sandstones in the Czech Republic. The tunnels originated either in weathered rock of overhanging surfaces, or in a thin layer of weathered sandstone formed between hard opaline crusts on rock surfaces and material not affected strongly by recent exogenic processes. Degraded rock crusts, which may bear parts of the biogenic structures, are present in sandy talus deposits usually representing all of the Holocene. Insect “borings” within lithified substrates in terrestrial settings are an unusual phenomenon; their fossilization potential in the Holocene sediments of the Bohemian castellated rocks may be relatively high.     

The role of GTP-binding proteins in mechanochemical movements of microorganisms and their potential to form filamentous structures

Prokaryotic cells contain proteins which form extended chains or multimers that oscillate between monomers and oligomers of varying length. Hydrolysis of nucleoside triphosphates combined with site-specific disposition of substrates and products to monomers and multimers is the driving force of dynamic instability of these molecules. Polymeric structures are connected in some manner to a variety of signaling systems that adhere to the polymeric matrix, including the GTP-binding protein(s), protein kinases and phosphatases, and other proteins or systems that communicate between the cytoplasmic membrane and the cytosol. Flexible organization allowing regulated dynamic movement is one of the key elements in all living cells. In eukaryotic cells actin and tubulin are the two main components of dynamically controlled spatial system. These proteins are noteworthy for their ability to polymerize, reversibly, into filaments or microtubules in association with hydrolysis of ATP or GTP, respectively. As such, they regulate most of the mechanics of cell movement including cell division, cell differentiation, phagocytosis and other dynamic phenomena. Recent evidence revealed that microbial cells create functional domains at specific sites of the cells and can form cytoplasmic tubules and fibers.     

Trace fossils of animal‐plant interactions and “pseudointeractions” from maletín (Bohemian cretaceous basin,Czech Republic)

Old collections of the Upper Cretaceous flora at Maletín yield examples of trace fossils of plant‐arthropod interactions, comparable with recent insect galls. Grooves and ridges, often preserved on leaves at this locality, are (in contradiction to several previous authors) interpreted as traces of burrowing organisms, which originated in soft sediment adjacent to the plant remains lying on a lake floor or buried in the substrate. The leaves functioned in the sediment at the time of burrowing and/or during compaction of the substrate as distinctive laminar bodies with specific physical characteristics and therefore they enabled the preservation of some aspects of ichnofabric otherwise invisible in the surrounding strata.     

Dynamic of apoptosis of cells in duodenal villi infected with <Emphasis Type="Italic">Eimeria acervulina</Emphasis> in broiler chickens

The aim of our study was to evaluate the parasite — host interactions at apoptosis level. We studied histopathological changes and time course of apoptosis in the duodenum during Eimeria acervulina infection. One-day-old broiler chicks were randomly allocated into two equal groups. At the age of two weeks the first group was experimentally infected with a pure suspension of sporulated E. acervulina oocysts. The second group served as a negative control. Tissue samples from the upper part of duodenum were obtained at 0.5, 1, 2, 3, 4, 5 and 6 days post infection. Biopsies of duodenum were studied immunohistochemically using DeadEnd™ Colometric TUNEL System for apoptosis detection in duodenal mucosa. Number of parasites in duodenal epithelium was also investigated. Our experimental results demonstrate: (i) macroscopic and histopathological changes in epithelium detected mainly in proximal segment of duodenum in infected groups; (ii) the number of developmental stages of E. acervulina (DSEA) during our trial increased, reaching the maximum 5 days post infection (dpi) (332.2 ± 16.12) (mean ± SEM), whereas the amount of DSEA declined significantly as late as 6 dpi (124.6 ± 3.91); (iii) the highest apoptosis level was recorded in initiatory 0.5 dpi (13.2 ± 1.02) and on the end of parasite development cycle after 5 dpi (12.6 ± 1.36). Finally, results showed that there was a period of inhibition of apoptosis during infection by E. acervulina.     

Isolation and biochemical characterization of two soluble iron(III) reductases from Paracoccus denitrificans.

Two soluble enzymes (FerA and FerB) catalyzing the reduction of a number of iron(III) complexes by NADH, were purified to near homogeneity from the aerobically grown iron-limited culture of Paracoccus denitrificans using a combination of anion-exchange chromatography (Sepharose Q), chromatofocusing (Mono P), and gel permeation chromatography (Superose 12). FerA is a monomer with a molecular mass of 19 kDa, whereas FerB exhibited a molecular mass of about 55 kDa and consists of probably two identical subunits. FerA can be classified as an NADH:flavin oxidoreductase with a sequential reaction mechanism. It requires the addition of FMN or riboflavin for activity on Fe(III) substrates. In these reactions, the apparent substrate specificity of FerA seems to stem exclusively from different chemical reactivities of Fe(III) compounds with the free reduced flavin produced by the enzyme. Observations on reducibility of Fe(III) chelated by vicinal dihydroxy ligands support the view that FerA takes part in releasing iron from the catechol type siderophores synthesized by P. denitrificans. Contrary to FerA, the purified FerB contains a noncovalently bound redox-active FAD coenzyme, can utilize NADPH in place of NADH, does not reduce free FMN at an appreciable rate, and gives a ping-pong type kinetic pattern with NADH and Fe(III)-nitrilotriacetate as substrates. FerB is able to reduce chromate, in agreement with the fact that its N-terminus bears a homology to the previously described chromate reductase from Pseudomonas putida. Besides this, it also readily reduces quinones like ubiquinone-0 (Q0) or unsubstituted p-benzoquinone.     

Mayfly Burrows in Firmground of Recent Rivers from the Czech Republic and Poland,with Some Comments on Ephemeropteran Burrows in General

U-shaped, pouch-like burrows with parallel limbs, covered with short scratches arranged in sets, occur in the thalweg of the Oh?e river in NW Czech Republic. Similar, but smaller burrows with rare scratches, not arranged in sets, occur in the thalweg of the Drw?ca river in N Poland. Probably, they are produced by larvae and/or nymphs of Palingenia and Polymitarcis (Ephoron), respectively. In both localities, they burrowed in firmground surfaces at shallow depths. The burrowed surfaces were emerged during low water levels. A review of recent mayfly burrows shows that they are 1) U-shaped pouches with parallel limbs and septum, which may be covered with short scratches and are oriented perpendicular to the bottom, irrespective of its inclination, or 2) wide U-shape burrows with divergent limbs, which may be branched. In the fossil record, the ichnogenera Fuersichnus, Asthenopodichnium, and Rhizocorallium are partly ascribed to mayfly burrows, but their comparison to the recent burrows shows that such interpretations are somewhat problematic. The mayfly burrows are potentially good indicators of aquatic, non-marine, well oxygenated, clean water environments.     

Functional and Biochemical Characterization of Human Eukaryotic Translation Initiation Factor 3 in Living Cells

The main role of the translation initiation factor 3 (eIF3) is to orchestrate formation of 43S-48S preinitiation complexes (PICs). Until now, most of our knowledge on eIF3 functional contribution to regulation of gene expression comes from yeast studies. Hence, here we developed several novel in vivo assays to monitor the integrity of the 13-subunit human eIF3 complex, defects in assembly of 43S PICs, efficiency of mRNA recruitment, and postassembly events such as AUG recognition. We knocked down expression of the PCI domain-containing eIF3c and eIF3a subunits and of eIF3j in human HeLa and HEK293 cells and analyzed the functional consequences. Whereas eIF3j downregulation had barely any effect and eIF3a knockdown disintegrated the entire eIF3 complex, eIF3c knockdown produced a separate assembly of the a, b, g, and i subunits (closely resembling the yeast evolutionary conserved eIF3 core), which preserved relatively high 40S binding affinity and an ability to promote mRNA recruitment to 40S subunits and displayed defects in AUG recognition. Both eIF3c and eIF3a knockdowns also severely reduced protein but not mRNA levels of many other eIF3 subunits and indeed shut off translation. We propose that eIF3a and eIF3c control abundance and assembly of the entire eIF3 and thus represent its crucial scaffolding elements critically required for formation of PICs.