Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids

Previous work has shown that molecular phylogenies of plastids, cyanobacteria, and proteobacteria based on the rubisco (ribulose-1,5- bisphosphate carboxylase/oxygenase) genes rbcL and rbcS are incongruent with molecular phylogenies based on other genes and are also incompatible with structural and biochemical information. Although it has been much speculated that this is the consequence of a single horizontal gene transfer (of a proteobacterial or mitochondrial rubisco operon into plastids of rhodophytic and chromophytic algae), neither this hypothesis nor the alternative hypothesis of ancient gene duplication have been examined in detail. We have conducted phylogenetic analyses of all available bacterial rbcL sequences, and representative plastid sequences, in order to explore these alternative hypothesis and fully examine the complexity of rubisco gene evolution. The rbcL phylogeny reveals a surprising number of gene relationships that are fundamentally incongruent with organismal relationships as inferred from multiple lines of other molecular evidence. On the order of six horizontal gene transfers are implied by the form I (L8S8) rbcL phylogeny, two between cyanobacteria and proteobacteria, one between proteobacteria and plastids, and three within proteobacteria. Alternatively, a single ancient duplication of the form I rubisco operon, followed by repeated and pervasive differential loss of one operon or the other, would account for much of this incongruity. In all probability, the rubisco operon has undergone multiple events of both horizontal gene transfer and gene duplication in different lineages.      

The savanna ecology of Kidepo Valley National Park: The effects of burning and browsing on the vegetation

Between 1947 and 1967 tree frequency was reduced by 30% in the Narus valley, Kidepo Valley National Park. Between 1967 and 1972 a further 50% reduction took place on experimental plots. Elephants were largely responsible. Despite a regeneration potential of c. 200 young trees per ha, very little tree regeneration was observed. Experimental fire treatments and animal–free exclosures revealed that annual burning and the current browsing pressure were independently capable of preventing tree regeneration. Fire effects were significant in the herb composition of the animal exclosures but less so on the grazed areas. This was attributed to trampling of litter on the grazed areas, which assisted termites in litter removal. Untrampled litter accumulation suppressed Themeda triandra to the benefit of Panicum maximum. Fire effects on the soil were small and impermanent.     

Oysters as habitat for limpets in a temperate mangrove forest

In temperate mangrove forests in New South Wales, Australia, the limpet Patelloida mimula Iredale lives on the oyster Saccostrea commercialis Iredale and Roughley, which, along with mangrove trees, provide the only hard substrata in a habitat otherwise dominated by soft-sediment. The objective of this study was to ascertain the degree of association between the limpet and the oyster by examining their patterns of co-occurrence in the forest and the relationship between individual pairs of limpets and oysters. Sampling of the distribution and abundance of limpets and oysters throughout the mangrove forest revealed that limpets were rarely present on substrata other than oysters. Patterns of abundance of limpets were, however, not directly related to the amount of habitat provided by the oysters. For example, there was a dramatic decline in the abundance of oysters from seaward to landward in the mangrove forest which was not reflected in the densities of limpets. Consequently, oysters appear to set the limits of distribution of limpets, but other factors modify their broad-scale patterns of distribution and abundance within these bounds. Limpets leave scars on oysters which might be home sites. About 98% of oysters with limpets had only one limpet per surface of oyster, and the distribution of limpets was overdispersed or repulsed. Moreover, in some areas of the forest, the lengths of limpets were directly related to lengths of oysters. Tracking of individual limpets for 13 days revealed that > 70% remained on the same scar of an oyster. This evidence suggests that for some limpets there is a strong association with particular oysters. Factors determining the distribution, abundance, and sizes of oysters are likely to be important sources of variation to the structure of populations of P. mimula in temperate mangrove forests.     

Behavioural responses of carnivorous marsupials (Planigale maculata) to toxic invasive cane toads (Bufo marinus)

The arrival of a toxic invasive species may impose selection on local predators to avoid consuming it. Feeding responses may be modified via evolutionary changes to behaviour, or via phenotypic plasticity (e.g. learning, taste aversion). The recent arrival of cane toads (Bufo marinus) in the Northern Territory of Australia induced rapid aversion learning in a predatory marsupial (the common planigale, Planigale maculata). Here, we examine the responses of planigales to cane toads in north‐eastern Queensland, where they have been sympatric for over 60 years, to investigate whether planigale responses to cane toads have been modified by long‐term exposure. Responses to toads were broadly similar to those documented for toad‐naïve predators. Most Queensland planigales seized (21 of 22) and partially consumed (11 of 22) the first toad they were offered, but were likely to ignore toads in subsequent trials. However, unlike their toad‐naïve conspecifics from the Northern Territory, the Queensland planigales all survived ingestion of toad tissue without overt ill effects and continued to attack toads in a substantial proportion of subsequent trials. Our data suggest that (i) learning by these small predators is sufficiently rapid and effective that selection on behaviour has been weak; and (ii) physiological tolerance to toad toxins may be higher in planigales after 60 years (approximately 60 generations) of exposure to this toxic prey.