Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina

Understanding the genetic basis of adaptation in response to environmental variation is fundamental as adaptation plays a key role in the extension of ecological niches to marginal habitats and in ecological speciation. Based on the assumption that some genomic markers are correlated to environmental variables, we aimed to detect loci of ecological relevance in the alpine plant Arabis alpina L. sampled in two regions, the French (99 locations) and the Swiss (109 locations) Alps. We used an unusually large genome scan [825 amplified fragment length polymorphism loci (AFLPs)] and four environmental variables related to temperature, precipitation and topography. We detected linkage disequilibrium among only 3.5% of the considered AFLP loci. A population structure analysis identified no admixture in the study regions, and the French and Swiss Alps were differentiated and therefore could be considered as two independent regions. We applied generalized estimating equations (GEE) to detect ecologically relevant loci separately in the French and Swiss Alps. We identified 78 loci of ecological relevance (9%), which were mainly related to mean annual minimum temperature. Only four of these loci were common across the French and Swiss Alps. Finally, we discuss that the genomic characterization of these ecologically relevant loci, as identified in this study, opens up new perspectives for studying functional ecology in A. alpina, its relatives and other alpine plant species.     

Hypomania: a transcultural perspective

This study examined the transcultural robustness of a screening instrument for hypomania, the Hypomania Checklist-32, first revised version (HCL-32 R1). It was carried out in 2606 patients from twelve countries in five geographic regions (Northern, Southern and Eastern Europe, South America and East Asia). In addition, GAMIAN Europe contributed data from its members. Exploratory and confirmatory factor analyses were used to examine the transregional stability of the measurement properties of the HCL-32 R1, including the influence of sex and age as covariates. Across cultures, a two-factor structure was confirmed: the first factor (F1) reflected the more positive aspects of hypomania (being more active, elated, self-confident, and cogni-tively enhanced); the second factor (F2) reflected the more negative aspects (being irritable, impulsive, careless, more substance use). The measurement properties of the HCL-32 R1 were largely invariant across cultures. Only few items showed transcultural differences in their relation to hypomania as measured by the test. F2 was higher among men and in more severe manic syndromes; F1 was highest in North and East Europe and lowest in South America. The scores decreased slightly with age. The frequency of the 32 items showed remarkable similarities across geographic areas, with two excep-tions: South Europeans had lower symptom frequencies in general and East Europeans higher rates of substance use. These findings support the interna-tional applicability of the HCL-32 R1 as a screening instrument for hypomania.     

Time series analysis of climate‐related factors and their impact on a red‐listed noble crayfish population in northern Sweden

1. Global climate change is predicted to raise water temperatures and alter flow regimes in northern river systems. Climate‐related factors might have profound impacts on survival, reproduction and distribution of freshwater species such as red‐listed noble crayfish (Astacus astacus) in its northern limit of distribution. 2. In this study, noble crayfish capture data over 27 years from the River Ljungan, Sweden, were examined. Time series of catch per unit effort (CPUE) were analysed in relation to the North Atlantic Oscillation (NAO) index, regional weather factors and water flow. CPUE was assumed to reflect differences in population size. Two models were constructed to explore the relative impact of different climate factors and density dependence on variability of catch sizes. 3. The most parsimonious model for CPUE time series, explaining 72% of the variance in CPUE, included density‐dependent population dynamics of the crayfish and climate or weather factors. The specific effect from density dependence in the model was 37%, while climate/weather factors contributed with 35% of the variation. The most important climate/weather factors are variations in NAO index and water flow. Temperature did not improve the model fit to capture data. 4. The best model was evaluated using independent data sets that gave correlations between model predictions and data ranging from 0.44 to 0.53. The density dependence shows a time lag of 1 year, while climate variables show time lags from 2 to 6 years in relation to CPUE, indicating effects on different cohorts of the crayfish population. 5. Both density dependence and climatic factors play a significant role in population fluctuations of noble crayfish. A 6‐year time lag for NAO index is puzzling but indicates that some as yet unidentified factors related to NAO might act on the juvenile stages of the population. Water flow shows a 2‐year lag to the CPUE, and high flow in the river may affect adult survival. The reasons for fluctuation of crayfish catches in response to climate need to be identified, and fishing quotas should consider the different cohort sizes because of variation in environment. Reintroduction programmes for crayfish need to consider effects of climate change when designing management strategies.     

Endogenous Shoot Growth Rhythms and Indeterminate Shoot Growth in Oak

Wide variations of shoot growth patterns in saplings of pin oak (Quercus palustris Muenchh.) have been observed as a consequence of varying environmental conditions, experimental manipulations, and vigor of trees. Shoot growth patterns range from a series of recurrent, determinate flushes, constituting a genuine endogenous rhythm, to continuous, indeterminate growth. Observed growth patterns agree well with those predicted by a model of rhythmic growth which assumes the dependence of shoot growth on the functional equilibrium between shoot and root system. Indirect evidence suggests that cessation of shoot growth under favorable environmental conditions might be a consequence of internal water deficits. Observed differences in shoot growth patterns between young and mature trees are discussed as logical consequences of the model.     

Triterpeneglycosideg as Inhibitors of Fungal Growth and Metabolism

Ergosterol was found to be the main sterol in the mycelia of Opbiobolus graminis, Neurospora crassa, and Aspsrgillus niger, A correlation was found between the amount of sterols in the mycelia of different fungi and the inhibitory effect of aescin. Aescin treatment caused a reduction of the amount of extractable sterols in the mycelia. The sterols seemed to be located mainly in the plasma membranes, and only trace amounts were Found in the mitochondrial membranes. The relative amount of sterols in the plasma membrane was found to be higher in O. graminis than in N. crassa and A. niger. Ca²⁺ interfered with the interaction, of sterols and aescin. In N. crassa the decreased inhibitory effect of aescin in the presence of Ca²⁺ was due to the reduced binding of the inhibitor to the sterols in the plasma membrane.     

The beetle tree of life reveals that Coleoptera survived end‐Permian mass extinction to diversify during the Cretaceous terrestrial revolution

Here we present a phylogeny of beetles (Insecta: Coleoptera) based on DNA sequence data from eight nuclear genes, including six single‐copy nuclear protein‐coding genes, for 367 species representing 172 of 183 extant families. Our results refine existing knowledge of relationships among major groups of beetles. Strepsiptera was confirmed as sister to Coleoptera and each of the suborders of Coleoptera was recovered as monophyletic. Interrelationships among the suborders, namely Polyphaga (Adephaga (Archostemata, Myxophaga)), in our study differ from previous studies. Adephaga comprised two clades corresponding to Hydradephaga and Geadephaga. The series and superfamilies of Polyphaga were mostly monophyletic. The traditional Cucujoidea were recovered in three distantly related clades. Lymexyloidea was recovered within Tenebrionoidea. Several of the series and superfamilies of Polyphaga received moderate to maximal clade support in most analyses, for example Buprestoidea, Chrysomeloidea, Coccinelloidea, Cucujiformia, Curculionoidea, Dascilloidea, Elateroidea, Histeroidea and Hydrophiloidea. However, many of the relationships within Polyphaga lacked compatible resolution under maximum‐likelihood and Bayesian inference, and/or lacked consistently strong nodal support. Overall, we recovered slightly younger estimated divergence times than previous studies for most groups of beetles. The ordinal split between Coleoptera and Strepsiptera was estimated to have occurred in the Early Permian. Crown Coleoptera appeared in the Late Permian, and only one or two lineages survived the end‐Permian mass extinction, with stem group representatives of all four suborders appearing by the end of the Triassic. The basal split in Polyphaga was estimated to have occurred in the Triassic, with the stem groups of most series and superfamilies originating during the Triassic or Jurassic. Most extant families of beetles were estimated to have Cretaceous origins. Overall, Coleoptera experienced an increase in diversification rate compared to the rest of Neuropteroidea. Furthermore, 10 family‐level clades, all in suborder Polyphaga, were identified as having experienced significant increases in diversification rate. These include most beetle species with phytophagous habits, but also several groups not typically or primarily associated with plants. Most of these groups originated in the Cretaceous, which is also when a majority of the most species‐rich beetle families first appeared. An additional 12 clades showed evidence for significant decreases in diversification rate. These clades are species‐poor in the Modern fauna, but collectively exhibit diverse trophic habits. The apparent success of beetles, as measured by species numbers, may result from their associations with widespread and diverse substrates – especially plants, but also including fungi, wood and leaf litter – but what facilitated these associations in the first place or has allowed these associations to flourish likely varies within and between lineages. Our results provide a uniquely well‐resolved temporal and phylogenetic framework for studying patterns of innovation and diversification in Coleoptera, and a foundation for further sampling and resolution of the beetle tree of life.     

Sex Identification in the Mink (Mustela vison Schreber) by Metrical Measurements of the Skull

The dental length and length of the first molar in the upper jaw of mink are characteristics used to estimate a discriminant function for sex identification of Norwegian populations. Reliability of the method is theoretically 93.2%.     

Triterpeneglycosides as Inhibitors of Fungal Growth and Metabolism

The inhibitory effect of the triterpeneglycosides aescin and avenacin on growth capability, leakage of organic and inorganic substances, and uptake of potassium ions in Ophiobolus graminis and Neurospora crassa was antagonized by the cations Ca²⁺ and Mg²⁺, the former having the greatest effect. The effect was different in the two fungi and was influenced by the buffer system.     

Multivariate Analysis Confirms the Continuum View of Plant Form

Multivariate analysis, specifically principal components analysis,shows that in flowering plants structures occur that arc intermediatebetween the typical representatives of a root, a caulome (stemand stem homologues), a phyllome (leaf and leaf homologues),a shoot and a trichome. Since these intermediates span the wholerange between the typical forms, a morphological continuum isdocumented. Implications and consequences of these findingsare discussed (e.g. homology, homeosis). The telome theory andHagemann's theory of the evolution of plant form are interpretedas referring to changes in the patterning of the morphologicalcontinuum. Plant morphology, principal components analysis, morphological continoum, angiosperms, flower, shoot, stem, leaf, enation, trichome, root, telome, thallus, morphological categories, homology, partial homology, homeosis     

Adaptive landscape genetics: pitfalls and benefits

Landscape genetics offers a promising framework for assessing the interactions between the environment and adaptive genetic variation in natural populations. A recent workshop held at the University of Neuchatel brought together leading experts in this field to address current insights and future research directions in adaptive landscape genetics. Considerable amounts of genetic and/or environmental data can now be collected, but the forthcoming challenge is to do more with such manna. This requires a markedly better understanding of the genetic variation that is adaptive and prompts for advances in information management together with the development of a balance between theory and data. Moreover, showing the links between landscapes and adaptive genetic variation will ultimately move the field beyond association studies.