Biogeography and history of the Mediterranean bird fauna

With 366 species of breeding birds, the Mediterranean region is a "hot spot" of species diversity. Many biogeographic realms contributed to the establishment of the extant fauna, which makes this region a crossroads for birds, but the two most important realms are the large forest blocks that extend today over Eurasia and the semi-arid belts of the southern and southwestern Palaearctic. The few groups that presumably differentiated within the Mediterranean basin are mostly birds of open habitats and shrublands (e.g. Sylvia spp.), whereas few species evolved in Mediterranean forests dominated by sclerophyllous evergreen tree species. We suggest this results from the history of vegetation belts and their associated faunas during the Pleistocene. On the whole, in contrast to other groups of vertebrates, the bird fauna is fairly homogeneously distributed all over the basin although there are some regional-specific trends in species assemblages, mostly on the basis of habitat selection and biogeographic origin. Many species of eastern and southeastern origin invaded the Mediterranean basin on the northern side of the sea up to the Balkan peninsula and the southern side to the Atlantic coast. The extant biogeographic patterns of the Mediterranean bird fauna are interpreted in the light of the Quaternary history shared by the biotas of the western Palaearctic in relation to the cycle of climatic changes which produced periodic huge spatiotemporal migrations of communities and populations. The severe human impact that started c. 8000-10,000 years ago resulted not so much in species extinctions as in dramatic changes in distributional patterns, complicating the reconstruction of biogeographic scenarios.     

Exploring lake ecosystems: hierarchy responses to long‐term change?

Shifts in climate regime have provoked substantial trophic‐ and species‐dependent changes within ecosystems. With growing concerns of present global warming, we examined potential lake ecosystem responses, natural hierarchy responses (i.e. immediate responses at lower system levels as opposed to delayed responses at higher system levels), and possible shifts among abiotic (physics, nutrients) and biotic (phytoplankton, zooplankton) system components. Specifically, we analyzed decadal data collected from Müggelsee, a lake in Berlin, Germany, for climate‐induced abiotic and biotic changes, their timing and type, and classified them as abrupt permanent, gradual permanent, abrupt temporary, or monotonic. We further categorized variable changes as a function of system hierarchy, including lake physics (ice, temperature, stratification), nutrients (phosphorus, nitrogen, silicate), plankton, and levels of integration (i.e. species, taxonomic groups, and total plankton). Contrary to current theory, data suggest abrupt responses did not occur in a hierarchy‐dependent manner, nor was a clear pattern observed among functional system‐based categories. Abrupt permanent changes were the most prominent response pattern observed, suggesting they may be driven by large‐scale climatic oscillations and by surpassed thresholds, as noted in previous case studies. Gradual changes coincided with affected abiotic parameters spanning an expansive time range; for example, climatic effects in spring preceded changes in nutrient limitation. Variables displaying no long‐term changes pointed to compensation processes caused by, e.g., simultaneously acting forces of warming trends and climate‐independent changes in trophic state. Nevertheless, the complexity of response patterns at the single system level manifested clear chronological regime shifts in abiotic and biotic parameters in spring and, to a lesser extent, in summer. With regard to projected global warming, the majority of currently unaffected system levels may face impending thermal thresholds, achievement of which would result in an accelerated shift in ecosystem state.     

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

Next‐generation technologies generate an overwhelming amount of gene sequence data. Efficient annotation tools are required to make these data amenable to functional genomics analyses. The Mercator pipeline automatically assigns functional terms to protein or nucleotide sequences. It uses the MapMan ‘BIN’ ontology, which is tailored for functional annotation of plant ‘omics’ data. The classification procedure performs parallel sequence searches against reference databases, compiles the results and computes the most likely MapMan BINs for each query. In the current version, the pipeline relies on manually curated reference classifications originating from the three reference organisms (Arabidopsis, Chlamydomonas, rice), various other plant species that have a reviewed SwissProt annotation, and more than 2000 protein domain and family profiles at InterPro, CDD and KOG. Functional annotations predicted by Mercator achieve accuracies above 90% when benchmarked against manual annotation. In addition to mapping files for direct use in the visualization software MapMan, Mercator provides graphical overview charts, detailed annotation information in a convenient web browser interface and a MapMan‐to‐GO translation table to export results as GO terms. Mercator is available free of charge via http://mapman.gabipd.org/web/guest/app/Mercator .     

Human mesenchymal stromal cells do not promote recurrence of soft tissue sarcomas in mouse xenografts after radiation and surgery

Background. Mesenchymal stromal cells (MSCs) promote wound healing, including after radiotherapy (RT) and surgery. The use of MSCs in regenerative medicine in the context of malignancy, such as to enhance wound healing post-RT/surgery in patients with soft tissue sarcomas (STSs), requires safety validation. The aim of this study was to determine the effects of human MSCs on STS growth in vitro and local recurrence and metastasis in vivo. Methods. Human primary STS and HT-1080 fibrosarcoma lines were transduced to express luciferase/eGFP (enhanced green fluorescent protein). Sarcoma cells were co-cultured or co-injected with bone marrow–derived MSCs for growth studies. Xenograft tumor models were established with STS lines in NOD/SCID/γ_c^null mice. To emulate a clinical scenario, subcutaneous tumors were treated with RT/surgery prior to MSC injection into the tumor bed. Local and distant tumor recurrence was studied using histology and bioluminescence imaging. Results. MSCs did not promote STS proliferation upon co-culture in vitro, which was consistent among MSCs from different donors. Co-injection of MSCs with sarcoma cells in mice exhibited no significant tumor-stimulating effect, compared with control mice injected with sarcoma cells alone. MSC administration after RT/surgery had no effect on local recurrence or metastasis of STS. Discussion. These studies are important for the establishment of a safety profile for MSC administration in patients with STS. Our data suggest that MSCs are safe in STS management after standard of care RT/surgery, which can be further investigated in early-phase clinical trials to also determine the efficacy of MSCs in reducing morbidity and to mitigate wound complications in these patients.     

Possible impact of mild winters on zooplankton succession in eutrophic lakes of the Atlantic European area

1. We report on a long-term study (1975–94) of water temperatures and plankton in a eutrophic lake (Heiligensee, Berlin, Germany). Using a phenomenological approach, we use historical data to infer how an increase in air temperature has influenced a natural zooplankton community.
2. Air temperatures in Berlin showed a significantly rising trend between 1975 and 1994. Mean winter air temperatures in the last 8 years always exceeded the long-term mean.
3. A rising trend was also found for April water temperature, which increased significantly beginning in 1988–89. An increase of 2.58°C in the last 21 years was recorded using a linear model. A significantly decreasing trend was found in June but no trend was noted for the other summer months.
4. Phytoplankton composition shifted from a dominance of diatoms and cryptophytes during winter and spring in the 1980s towards a dominance of cyanobacteria in 1990–94.
5. The dominant zooplankton species in spring shifted in recent years from the large-bodied Daphnia galeata to the smaller D. cucullata . Cyclops kolensis , previously the only invertebrate predator during winter, decreased in abundance while C. vicinus , usually present during spring and autumn, increased in abundance and was numerous during winter, a season passed in diapause in the earlier years.
6. Because direct and indirect temperature effects are species specific, we put forward the hypothesis that zooplankton species, rather than functional groups, are the nexus between environmental stress, such as rising air temperatures, and ecosystem changes.     

On the possible occurrence of anisospory in some Hepaticae

PANT, D. D. & SINGH, R., 1989. On the possible occurrence of anisospory in some Hepaticae. Possible anisospory is reported for the first time in four species of Hepaticae, viz., Targionia indica Udar, Targionia hypophylla L., Cyathodium aureo-nitens Griff. (Mitt.), Cyathodium barodae Chavan. The report is based on observations of wide variations in size of spores comparable with those of anisosporous mosses of the family Orthotrichacae.