Proteomic analysis of regenerating mouse liver following 50% partial hepatectomy

Background

Although 70% (or 2/3) partial hepatectomy (PH) is the most studied model for liver regeneration, the hepatic protein expression profile associated with lower volume liver resection (such as 50% PH) has not yet been reported. Therefore, the aim of this study was to determine the global protein expression profile of the regenerating mouse liver following 50% PH by differential proteomics, and thereby gaining some insights into the hepatic regeneration mechanism(s) under this milder but clinically more relevant condition.

Results

Proteins from sham-operated mouse livers and livers regenerating for 24 h after 50% PH were separated by SDS-PAGE and analyzed by nanoUPLC-Q-Tof mass spectrometry. Compared to sham-operated group, there were totally 87 differentially expressed proteins (with 50 up-regulated and 37 down-regulated ones) identified in the regenerating mouse livers, most of which have not been previously related to liver regeneration. Remarkably, over 25 differentially expressed proteins were located at mitochondria. Several of the mitochondria-resident proteins which play important roles in citric acid cycle, oxidative phosphorylation and ATP production were found to be down-regulated, consistent with the recently-proposed model in which the reduction of ATP content in the remnant liver gives rise to early stress signals that contribute to the onset of liver regeneration. Pathway analysis revealed a central role of c-Myc in the regulation of liver regeneration.

Conclusions

Our study provides novel evidence for mitochondria as a pivotal organelle that is connected to liver regeneration, and lays the foundation for further studies on key factors and pathways involved in liver regeneration following 50% PH, a condition frequently used for partial liver transplantation and conservative liver resection.     

Murine Cytomegalovirus Capsid Assembly Is Dependent on US22 Family Gene M140 in Infected Macrophages

Macrophages are an important target cell for infection with cytomegalovirus (CMV). A number of viral genes that either are expressed specifically in this cell type or function to optimize CMV replication in this host cell have now been identified. Among these is the murine CMV (MCMV) US22 gene family member M140, a nonessential early gene whose deletion (RVΔ140) leads to significant impairment in virus replication in differentiated macrophages. We have now determined that the defect in replication is at the stage of viral DNA encapsidation. Although the rate of RVΔ140 genome replication and extent of DNA cleavage were comparable to those for revertant virus, deletion of M140 resulted in a significant reduction in the number of viral capsids in the nucleus, and the viral DNA remained sensitive to DNase treatment. These data are indicative of incomplete virion assembly. Steady-state levels of both the major capsid protein (M86) and tegument protein M25 were reduced in the absence of the M140 protein (pM140). This effect may be related to the localization of pM140 to an aggresome-like, microtubule organizing center-associated structure that is known to target misfolded and overexpressed proteins for degradation. It appears, therefore, that pM140 indirectly influences MCMV capsid formation in differentiated macrophages by regulating the stability of viral structural proteins.An important feature of cytomegalovirus (CMV) pathogenesis is dissemination of virus to target organs by infected monocytes that harbor CMV DNA (14, 36). Differentiation of these cells into macrophages as they extravasate into tissues triggers production of infectious virus. Infection with human CMV (HCMV) drives monocytes toward a proinflammatory macrophage phenotype with an extended life span (7, 36). This cellular differentiation process is accompanied by numerous physiological changes that could, in theory, negatively affect virus replication. These include increases in reactive oxygen intermediates, phagocytosis, lysosomal compartments, mitochondrial activities, secretory enzymes, and antiviral cytokines, as well as numerous receptors that render these cells highly interactive with the extracellular matrix and immune modulators (7, 14). It is likely, therefore, that CMV encodes products to counteract factors that are adverse to replication or to subvert cellular events to enhance replication. The mouse model has been utilized to identify genes within murine CMV (MCMV) that facilitate replication within differentiated macrophages.To date, four MCMV genes or gene regions have been identified as determinants of macrophage tropism in that deletion of or insertion within these genes has no impact on virus replication in fibroblasts but significantly depresses replication in macrophages (reviewed in reference 14). Gene M78 encodes a G protein-coupled receptor that facilitates accumulation of immediate-early RNA at low multiplicities (29). The product of gene M45 is virion associated and conveys antiapoptotic functions by binding to RIP1 (4, 21). The US22 gene family member M36 encodes a virion-associated protein that has antiapoptotic function by binding to caspase 8 (24). Finally, the US22 gene family members M139, M140, and M141 optimize MCMV replication in fully differentiated tissue macrophages both in vitro and in vivo (16, 17, 24). Two additional MCMV genes of unknown function are transcribed in infected macrophages but not fibroblasts (38), indicating additional adaptations specific to this target cell.The M139, M140, and M141 early gene products form at least three stable complexes that colocalize to a perinuclear cis-Golgi region in infected macrophages (18). Sequence analysis of the three genes does not reveal any consensus functional domains, with the exception of a putative nuclear localization sequence within M139 and M141 (15). Deletion of one or more of the three genes does not influence apoptosis (24) or tumor necrosis factor alpha or nitric oxide activities (unpublished data). Therefore, the function of these genes remains unknown. It is apparent that M140 is fundamental to the function(s) of these genes for several reasons. First, the degree of impairment in replication of RVΔ140 is equal to that of a mutant deleted of all three genes (16). Second, pM140 is a component of all three complexes identified: a pM140-pM141 complex and two pM139-pM140-pM141 complexes that differ in size and/or mass (18). Third, pM140 localizes to the nucleus but is redistributed to the cytoplasm when expressed with pM141 (18).In this study, we took a broad approach to assessing the function of M140 in optimizing MCMV replication in macrophages. The data indicate that impairment in replication of MCMV deleted of M140 is after genome replication but prior to virion assembly. Both the copy numbers and rates of viral genome replication for revertant and mutant virus in macrophages were comparable. However, in the absence of M140, capsids were rarely detected by electron microscopy in the nucleus or cytoplasm. Mutant viral DNA was highly sensitive to DNase, although cleavage of DNA was not compromised. Because cleavage of viral DNA is linked to encapsidation, these data suggest that procapsid stability, rather than formation, was altered by the M140 deletion. In support of this, steady-state levels of the major capsid protein (MCP) and M25 tegument protein in mutant virus-infected cells failed to accumulate to wild-type (WT) levels. The fact that pM140 localized to an aggresome-like structure, which is typically important in regulating viral and cellular protein degradation, implies that pM140 may function to regulate viral protein degradation. These studies indicate that pM140 indirectly regulates virus capsid assembly by regulating the stability of viral structural proteins.     

Detection of enterotoxigenic Clostridium perfringens type A isolates in American retail foods

Currently there is only limited understanding of the reservoirs for Clostridium perfringens type A food poisoning. A recent survey (Y.-T. Lin and R. Labbe, Appl. Environ. Microbiol. 69:1642-1646, 2003) of non-outbreak American retail foods did not identify the presence of a single C. perfringens isolate carrying the enterotoxin gene (cpe) necessary for causing food poisoning. The present study revisited this issue, using revised methodology and food sampling strategies. In our survey, cpe-positive C. perfringens isolates were detected in approximately 1.4% of approximately 900 surveyed non-outbreak American retail foods. Interestingly, those enterotoxigenic isolates in non-outbreak foods appear indistinguishable from C. perfringens isolates known to cause food poisoning outbreaks: i.e., the enterotoxigenic retail food isolates all carry a chromosomal cpe gene, are classified as type A, and exhibit exceptional heat resistance. Collectively, these findings indicate that some American foods are contaminated, at the time of retail purchase, with C. perfringens isolates having full potential to cause food poisoning. Furthermore, demonstrating that type A isolates carrying a chromosomal cpe gene are the enterotoxigenic isolates most commonly present in foods helps to explain why these isolates (rather than type A isolates carrying a plasmid cpe gene or cpe-positive type C or D isolates) are strongly associated with food poisoning outbreaks. Finally, since type A chromosomal cpe isolates present in the surveyed raw foods exhibited strong heat resistance, it appears that exceptional heat resistance is not a survivor trait selected for by cooking but is instead an intrinsic trait possessed by many type A chromosomal cpe isolates.     

转录因子PaPho与丝状真菌Podospora anserina中磷元素的吸收和利用研究

作为生物体必需的营养元素之一,磷在物质代谢、信号传导和能量储存中起着关键作用。【目的】研究丝状真菌Podospora anserina中调控磷酸盐代谢相关转录因子的作用,可进一步阐明真核微生物中磷元素吸收的调控机制。【方法】利用同源重组的方法定点敲除P.anserina中2个磷代谢相关转录因子PaPho1和PaPho2,遗传杂交构建双重突变体ΔPaPho1ΔPaPho2;通过表型分析、无机磷含量测定和酸性磷酸酶活性测定分析各突变菌株的变化;利用实时定量聚合酶链反应(real-time quantitative polymerase chain reaction,RT-qPCR)分析磷代谢相关基因的表达情况。【结果】在无机磷作为唯一磷来源的培养基上,ΔPaPho1ΔPaPho2无法生长;在添加有机磷的培养基中,ΔPaPho1ΔPaPho2和野生型菌株生长无显著性差异。在同时添加有机磷和无机磷的培养基中,ΔPaPho1ΔPaPho2的无机磷含量和酸性磷酸酶活性比野生型菌株的分别下降了25.0%和61.9%,ΔPaPho1ΔPaPho2中无机磷酸盐转运蛋白基因的表达水平显著降低。【结论】在P...     

植物蛋白质SUMO化修饰体外高效检测系统

蛋白质SUMO化修饰是一种调控蛋白命运的关键修饰方式, 广泛参与植物生长发育及逆境胁迫响应。SUMO化修饰过程主要由激活酶(E1)-结合酶(E2)-连接酶(E3)组成的级联酶促反应催化, 其关键酶组分将SUMO分子缀合至底物蛋白的赖氨酸残基, 形成共价异肽键以完成SUMO化修饰过程。该文报道了1种植物蛋白质SUMO化修饰体外高效检测系统, 通过在大肠杆菌(Escherichia coli)中构建拟南芥(Arabidopsis thaliana) SUMO化修饰的关键通路实现对底物蛋白的SUMO化修饰, 结果可通过免疫印迹进行检测。该系统可以简化植物蛋白质SUMO化修饰的检测流程, 为植物细胞SUMO化修饰的功能研究提供了有力工具。     

Fecal microbiota transplantation: standardization or diversification?

<正>Call for standardization of fecal microbiota transplantation(FMT)The gut microbiota plays an important role in human health and disease. Dysbiosis is often recognized in patients with diseases of the digestive and other systems(Blaser, 2019; Li et al., 2018 b; Qin et al., 2018). FMT refers to the administration of fecal material containing distal gut microbiota from a healthy person(donor) to a patient(recipient) to restore the gut microecology of the recipient(Kelly et al., 2015). Clinical guidelines have strongly recommended FMT for the