Pathways analysis of differential gene expression induced by engrafting doses of total body irradiation for allogeneic bone marrow transplantation in mice

A major challenge in allogeneic bone marrow (BM) transplantation is overcoming engraftment resistance to avoid the clinical problem of graft rejection. Identifying gene pathways that regulate BM engraftment may reveal molecular targets for overcoming engraftment barriers. Previously, we developed a mouse model of BM transplantation that utilizes recipient conditioning with non-myeloablative total body irradiation (TBI). We defined TBI doses that lead to graft rejection, that conversely are permissive for engraftment, and mouse strain variation with regards to the permissive TBI dose. We now report gene expression analysis, using Agilent Mouse 8x60K microarrays, in spleens of mice conditioned with varied TBI doses for correlation to the expected engraftment phenotype. The spleens of mice given engrafting doses of TBI, compared with non-engrafting TBI doses, demonstrated substantially broader gene expression changes, significant at the multiple testing-corrected P <0.05 level and with fold change ≥2. Functional analysis revealed significant enrichment for a down-regulated canonical pathway involving B-cell development. Genes enriched in this pathway suggest that suppressing donor antigen processing and presentation may be pivotal effects conferred by TBI to enable engraftment. Regardless of TBI dose and recipient mouse strain, pervasive genomic changes related to inflammation was observed and reflected by significant enrichment for canonical pathways and association with upstream regulators. These gene expression changes suggest that macrophage and complement pathways may be targeted to overcome engraftment barriers. These exploratory results highlight gene pathways that may be important in mediating BM engraftment resistance.     

宋代海底沉船“南海Ⅰ号”出水木质文物中细菌类群

【目的】通过对"南海Ⅰ号"沉船出水木质文物标本中细菌类群的分析,了解饱水木质文物中的细菌类群并推测细菌对木质文物损害的机制。【方法】应用Illumina Mi Seq测序平台对采自该沉船的10份木质文物标本中细菌V3–V4序列进行测序与分析,比较各标本中细菌群落的组成差异。【结果】根据97%序列相似性得到3 780不同的细菌OTUs,分属34目、35科的187个属;多数细菌OTU属于变形菌门(Proteobacteria)细菌,占全部细菌OTU的52.9%,在细菌纲水平上γ-变形菌纲(γ-Proteobacteria)(占17.9%)是丰度最高的细菌纲。德沃氏菌属(Devosia)(3.5%)是"南海一号"沉船样品丰度最高的属,其他分别属于甲基娇养杆菌属(Methylotenera)(2.4%)、鼠尾菌属(Muricauda)(1.2%)。其中氢噬胞菌属(Hydrogenophaga)、中国农大湖积物杆菌(Lacibacter cauensis)、德氏食酸菌(Acidovorax delafieldii)、德沃斯氏菌属(Devosia)、沉积物杆状菌属(Sediminibacterium)、缺陷短孢单胞菌(Brevundimonas diminuta)和门多萨假单胞菌(Pseudomonas mendocina)在所有样品中均可检测到。【结论】"南海Ⅰ号"沉船出水木质文物存在着种类丰富的好氧与厌氧细菌种类,多种细菌类群具有较好的纤维素降解能力与铁硫元素转化能力,控制细菌群落中参与分解纤维素的细菌与铁硫循环菌活性对于保护木质文物有重要作用。     

Isolation and Functional Validation of Salinity and Osmotic Stress Inducible Promoter from the Maize Type-II H+-Pyrophosphatase Gene by Deletion Analysis in Transgenic Tobacco Plants

Salinity and drought severely affect both plant growth and productivity, making the isolation and characterization of salinity- or drought-inducible promoters suitable for genetic improvement of crop resistance highly desirable. In this study, a 1468-bp sequence upstream of the translation initiation codon ATG of the promoter for ZmGAPP (maize Type-II H⁺-pyrophosphatase gene) was cloned. Nine 5´ deletion fragments (D1–D9) of different lengths of the ZmGAPP promoter were fused with the GUS reporter and translocated into tobacco. The deletion analysis showed that fragments D1–D8 responded well to NaCl and PEG stresses, whereas fragment D9 and CaMV 35S did not. The D8 segment (219 bp; -219 to -1 bp) exhibited the highest promoter activity of all tissues, with the exception of petals among the D1–D9 transgenic tobacco, which corresponds to about 10% and 25% of CaMV 35S under normal and NaCl or PEG stress conditions, respectively. As such, the D8 segment may confer strong gene expression in a salinity and osmotic stress inducible manner. A 71-bp segment (-219 to -148 bp) was considered as the key region regulating ZmGAPP response to NaCl or PEG stress, as transient transformation assays demonstrated that the 71-bp sequence was sufficient for the salinity or osmotic stress response. These results enhance our understanding of the molecular mechanisms regulating ZmGAPP expression, and that the D8 promoter would be an ideal candidate for moderating expression of drought and salinity response genes in transgenic plants.     

Chloropicrin Emission Reduction by Soil Amendment with Biochar

Biochar has sorption capacity, and can be used to enhance the sequestration of volatile organic contaminants such as pesticides in soil. Chloropicrin (CP) is an important soil fumigant for the production of many fruit and vegetable crops, but its emissions must be minimized to reduce exposure risks and air pollution. The objective of this study was to determine the capacity of biochar to adsorb CP and the effect of biochar amendments to soil on CP emission, concentration in the soil gas phase, degradation in soil and CP bioactivity for controlling soil borne pests. CP emission and concentration in the soil air phase were measured from packed soil columns after fumigant injection at 20-cm depth and application of selected doses of biocharto the surface 5 cm soil. Laboratory incubation and fumigation experiments were conducted to determine the capacity of biochar to adsorb CP, the effects on CP degradation and, separately, CP’s bioactivity on soil borne pests in soil amended with biochar. Biochar amendment at 2% to 5% (w/w) greatly reduced total CP emission losses by 85.7% - 97.7% compared to fumigation without biochar. CP concentrations in the soil gas-phase, especially in the top 5 cm of soil, were reduced within 48 h following application. The half-life of CP decreased from 13.6 h to 6.4 h as the biochar rate increased from 0% to 5%. CP and its metabolite (dichloronitromethane) both degraded more rapidly in pure biochar than in soil. The biochar used in the present study had a maximum adsorption capacity for CP of less than 5 mg g^-1. There were no negative effects on pathogen and nematode control when the biochar used in this study was less than 1% (on a weight basis) in soil. Biochar amendment to soil reduced the emissions of CP. CP concentrations in the top 5 cm of soil gas-phase were reduced. CP degradation was accelerated with the addition of biochar. The biochar used in the present study had a low adsorption capacity for CP. There were no negative effects on pathogen and nematode control when the biochar amendment rate was less than 1% (by weight). The findings would be useful for establishing guidelines for biochar use in soil fumigation.     

A new Pr3+‐activated molybdate‐based phosphor for application to white LEDs with blue excitation

The novel red‐emitting phosphors K_xSr_1?2xMoO₄:Pr³⁺_x (0.00 ≤ x ≤ 0.04) were prepared by solid‐state reaction. The crystallization and particle sizes of samples were investigated by powder X‐ray diffraction (XRD) and transmission electron microscopy (TEM). TEM images were in good agreement with the theoretical calculation data from the XRD patterns. Photoluminescence analysis indicated that there were three excitation peaks under 430–500 nm, and all samples showed the intensely red emission at 648 nm corresponding to the ³P₀ → ³F₂ transition of Pr³⁺. The concentrations of doping ions, temperature and polyethylene glycol in the phosphor system can significantly influence the intensity of the red emission. The photoluminescence spectral intensity reached its maximum at x = 0.02. The results showed that the investigated phosphor is a potential red phosphor for white light‐emitting diodes. Copyright © 2010 John Wiley & Sons, Ltd.     

Cytoplasmic HYL1 modulates miRNA-mediated translational repression

MicroRNAs (miRNAs) control various biological processes by repressing target mRNAs. In plants, miRNAs mediate target gene repression via both mRNA cleavage and translational repression. However, the mechanism underlying this translational repression is poorly understood. Here, we found that Arabidopsis thaliana HYPONASTIC LEAVES1 (HYL1), a core component of the miRNA processing machinery, regulates miRNA-mediated mRNA translation but not miRNA biogenesis when it localized in the cytoplasm. Cytoplasmic HYL1 localizes to the endoplasmic reticulum and associates with ARGONAUTE1 (AGO1) and ALTERED MERISTEM PROGRAM1. In the cytoplasm, HYL1 monitors the distribution of AGO1 onto polysomes, binds to the mRNAs of target genes, represses their translation, and partially rescues the phenotype of the hyl1 null mutant. This study uncovered another function of HYL1 and provides insight into the mechanism of plant gene regulation.

The nuclear miRNA biogenesis factor HYL1 also localizes to the cytoplasm to modulate miRNA-mediated translational repression.     

豚草和三裂叶豚草不同植株部位种子萌发与入侵扩散关系

豚草(Ambrosia artemisiifoliaLinn.)和三裂叶豚草(A. trifidaLinn.)是我国恶性入侵物种,分布常呈高密度单一种群,且结实量庞大。探讨二者不同植株部位种子萌发(休眠)与扩散特点,对了解二者入侵机制具有重要意义。以新疆伊犁新源县发生的豚草和三裂叶豚草为材料,在种子成熟期,根据植株高度、枝条长度,按比例从上到下分为9个部位,对不同植株部位种子的形态特征、数量和萌发特性进行比较,分析这两种植物不同植株部位种子萌发与扩散的共性和差异性,研究二者种群密度调节和入侵的关系。结果表明:1)两个物种内不同植株部位间种子的长、宽、百粒重无显著差异,但三裂叶豚草种子的长度和宽度分别是豚草的2—3倍,百粒重高7倍。结合两个物种在伊犁地区分布差异,认为种子大小是两个物种分布区域性差异的原因之一。2)豚草和三裂叶豚草植株外部的上顶、中顶、上中部位种子数占植株总种子数量的50%,中中、下顶占比约23%,而下部的上基、中基、下中、下基的种子数占比约27%,表明当年生产的种子有近73%的比例具有远距离扩散的潜力。3)豚草和三裂叶豚草不同植株部位种子的萌发率具有上端中端下端的趋势;初始萌发时间为下端中端上端;萌发持续时间为上端中端下端。这种萌发方式避免了同一生长季大批种子同时萌发有可能导致高密度死亡的风险。基于上述研究分析,认为豚草和三裂叶豚草不同植株部位种子具有不同的适应功能。其中,上部所产生的种子具较强的扩散能力和低休眠性,有利于两物种快速占据新生境并扩大种群;而中、下部位的种子在母株周围就近扩散,翌年萌发率低,缓解了种群竞争。豚草和三裂叶豚草不同植株部位生产的种子特性和萌发差异是两个物种进行种群密度调节和扩散入侵的重要原因。     

Discovery of SCY45, a Natural Small‐Molecule MDM2‐p53 Interaction Inhibitor

The disruption of the MDM2‐p53 interaction has been regarded as an attractive strategy for anticancer drug discovery. Here, the natural small‐molecule SCY45 was identified as a potent MDM2‐p53 interaction inhibitor based on fluorescence polarization and molecular modeling. SCY45 inhibited the MDM2‐p53 interaction with an IC₅₀ value of 4.93±0.08 μm . The structural modeling results showed that SCY45 not only had high structural similarity with nutlin‐3a, a well‐reported MDM2‐P53 interaction inhibitor, but also bound to the p53 binding pocket of MDM2 with a binding mode similar to that of nutlin‐3a. Moreover, SCY45 reduced the cell viability in cancer cells with MDM2 gene amplification. SCY45 showed the highest inhibition for SJSA‐1 cells, which exhibit excessive MDM2 gene amplification, with an IC₅₀ value of 7.54±0.29 μm , whereas SCY45 showed a weaker inhibition for 22Rv1 cells and A549 cells, which have a single copy of the MDM2 gene, with IC₅₀ values of 18.47±0.75 μm and 31.62±1.96 μm , respectively.