Low Intraspecific Diversity in a Polynucleobacter Subcluster Population Numerically Dominating Bacterioplankton of a Freshwater Pond

Cultivation-dependent and -independent methods were combined to investigate the microdiversity of a Polynucleobacter subcluster population (Betaproteobacteria) numerically dominating the bacterioplankton of a small, humic freshwater pond. Complete coverage of the population by cultivation allowed the analysis of microdiversity beyond the phylogenetic resolution of ribosomal markers. Fluorescent in situ hybridization with two probes specific for the narrow subcluster C (PnecC bacteria) of the Polynucleobacter cluster revealed that this population contributed up to 60% to the total number of bacterioplankton cells. Microdiversity was investigated for a date at which the highest relative numbers of PnecC were observed. A clone library of fragments of the ribosomal operon (16S rRNA genes, complete 16S-23S internal transcribed spacer 1 [ITS1], partial 23S rRNA genes) amplified with universal bacterial primers was constructed. The library was stepwise screened for fragments from PnecC bacteria and for different ITS genotypes of PnecC bacteria. The isolated PnecC strains were characterized by sequencing of the 16S rRNA genes and the ITS1. Both the clone library and the established culture collection contained only the same three ITS genotypes, and one of them contributed 46% to the entire number of clones. Genomic fingerprinting of the isolates with several methods always resulted in the detection of only one fingerprint per ITS genotype. We conclude that a Polynucleobacter population with an extremely low intraspecific diversity and an uneven structure numerically dominated the bacterioplankton community in the investigated habitat. This low intraspecific diversity is in strong contrast to the high intraspecific diversities found in marine bacterial populations.     

Different <Emphasis Type="Italic">Planctomycetes</Emphasis> diversity patterns in latitudinal surface seawater of the open sea and in sediment

The 16S rRNA gene approach was applied to investigate the diversity of Planctomycetes in latitudinal surface seawater of the Western Pacific Ocean. The results revealed that the Pirellula-Rhodopirellula-Blastopirellula clade dominated the Planctomycetes community at all surface seawater sites while the minority genera Gemmata and Planctomyces were only found at sites H5 and H2 respectively. Although the clone frequency of the PRB clade seemed stable (between 83.3% and 94.1%) for all surface seawater sites, the retrieved Pirellula-Rhodopirellula-Blastopirellula clade presented unexpected diversity. Interestingly, low latitude seawater appeared to have higher diversity than mid-latitudes. integral-LIBSHUFF software analysis revealed significantly different diversity patterns between in latitudinal surface seawater and in the sediment of South China Sea station M2896. Our data suggested that different hydrological and geographic features contributed to the shift of Planctomycetes diversity in marine environments. This is, to our knowledge, the first systematic assessment of Planctomycetes in latitudinal surface seawater of the open sea and the first comparison of diversity pattern between surface seawater and sediments and has broadened our understanding of Planctomycetes diversity in marine environments.     

丙酮酸发酵过程中光滑球拟酵母过程功能的强化

对不同葡萄糖浓度下光滑球拟酵母分批发酵生产丙酮酸的动力学模型分析发现, 葡萄糖浓度是影响光滑球拟酵母发酵生产丙酮酸过程功能的关键因素。在发酵初始阶段, 低浓度葡萄糖可维持较高的菌体比生长速率; 对数生长中前期, 葡萄糖快速进料使菌体浓度接近最大值, 并实现碳流从菌体生长转向丙酮酸积累; 对数生长后期葡萄糖浓度控制在33.4 g/L以维持高丙酮酸对葡萄糖产率系数 (0.71 g/g)。采用奇异控制的葡萄糖流加方式, 在7 L发酵罐上控制不同发酵阶段葡萄糖浓度处于最佳水平以强化光滑球拟酵母过程功能, 丙酮酸产量 (83.1 g/L)、产率 (0.621 g/g)、生产强度[1.00 g/(L·h)]与分批发酵对比, 分别提高了21.3%、21.6%和29.9%。     

Seasonal variation of microbial eukaryotic community composition in the large,shallow, subtropical Taihu Lake,China

Microbial eukaryotic community (0.8–20 μm) composition and its seasonal variation were investigated in large, shallow, subtropical Lake Taihu located in Southeast China. The water samples were collected monthly from August 2006 to July 2007 at two sites distantly located in Meiliang Bay and Lake Center, which differed strongly in their trophic status and sediment resuspension. The microbial eukaryotic community compositions (MECC) were measured using denaturing gradient gel electrophoresis (DGGE) of PCR-amplified eukaryotic 18S rRNA gene fragments. Seasonal variations were related to environmental factors by means of redundancy analysis (RDA) in order to reveal the most important regulating factors. At both sites, the structures and Shannon–Wiener indices of the microbial eukaryotic communities displayed apparent seasonal variations, which were significantly related to environmental variables. There were significant intrahabitat differences in environmental factors regulating MECC, as well as in the seasonal dynamics of the two sites during the study period. At Meiliang Bay, the variations of total phosphorus concentration and cladocera abundance had the most profound impacts on the microbial eukaryotic community composition, while at Lake Center, the total nitrogen concentration and conductivity were most influential. Our results suggest that the DGGE method is a cost-effective way to analyze the seasonal dynamics of MECC and their interaction with environmental variables, which will provide new insights into the diversity and dynamics of MECC.     

林火干扰对大兴安岭主要林分类型地上生物量预测的影响模拟研究

林火干扰是北方森林最主要的自然干扰之一,对北方森林地上生物量影响是一个长期的过程。因此,在预测地上生物量动态变化时需要考虑林火的影响。运用空间直观景观模型LANDIS PRO,模拟大兴安岭林区林火对不同树种地上生物量预测的影响。选取研究区5种主要树种林分(兴安落叶松、樟子松、云杉、白桦和山杨),以无干扰情景为参考预案,在验证模型模拟结果的基础上,模拟林火在短期(0—50a)、中期(50—150a)和长期(150—300a)对地上生物量的定量化影响,及其对不同立地类型地上生物量的动态变化。结果表明:(1)基于森林调查数据参数化的2000年森林景观模拟结果能够较好地代表2000年真实森林景观,模拟的2010年森林林分密度和胸高断面积与2010年森林调查数据无显著性差异(P0.05),当前林火干扰机制模拟结果能够较好地与样地调查数据匹配,说明林火模拟能够代表当前研究区林火发生情况;(2)与无干扰预案相比,整个模拟时期内景观水平上林火减少了1.7—5.9 t/hm2地上生物量;(3)与无干扰预案相比,林火预案下主要树种生物量在短期、中期和长期变化显著(P0.05);(4)在不同模拟时期,林火显著地改变了地上生物量空间分布,其中以亚高山区地上生物量降低最为明显。研究可为长期森林管理以及森林可持续发展提供参考。     

Low-serum culture system improves the adipogenic ability of visceral adipose tissue-derived stromal cells

In obese adipose tissue, infiltrating macrophages release proinflammatory cytokines that trigger insulin resistance. An adipocyte-based platform from visceral fat would be useful to elucidate the pathology of adipose inflammation and to develop therapeutic drugs for insulin resistance. ADSCs (adipose tissue-derived mesenchymal stromal cells) expanded from subcutaneous fat are intensively studied as sources for regenerative medicine. However, the adipocyte culture system from visceral fat tissue has not been utilized yet. We aimed to establish the bioactive adipocyte platform using ADSCs from visceral fat pad. Stromal vascular fractions were processed from epididymal fat pads of Sprague-Dawley rats and three human omental fat pads, and the ADSCs were expanded using a low-serum culture method. The responses of ADSCs and ADSC-adipocytes (their adipogenic lineages) to pioglitazone, a therapeutic drug for diabesity, were evaluated by gene expression and ELISA. ADSCs (1×108) were expanded from 10 g of rat epididymal fat pads or human omental fat pads over five passages. Cell surface marker expressions revealed that visceral ADSCs were equivalent to mesenchymal stem cells. ADSC-adipocytes expanded in the low-serum culture system significantly showed higher expression of adipogenic markers [PPAR (peroxisome proliferator-activated receptor) γ, LPL (lipoprotein lipase) and FABP4 (fatty acid-binding protein 4)] and adipocytokines [adiponectin, resistin, leptin, PAI-1 (plasminogen-activator inhibitor 1) and IL (interleukin)-10] than those expanded in a high-serum culture system. Pioglitazone accelerated the adipogenic induction and increased adiponectin expression in human ADSCs by 57.9±5.8-fold (mean±S.E.M.) relative to control cells (P<0.001). Both in rat and human ADSC-adipocytes, TNF-α significantly induced proinflammatory cytokines [MCP-1 (monocyte chemoattractant protein-1) and IL-6] and suppressed adiponectin expression, while pioglitazone antagonized these effects. The present findings suggest that visceral ADSC-adipocytes expanded in low-serum culture would be useful for adiposcience and pharmacological evaluations.     

抚仙湖超微型浮游藻类群落结构空间分布特征

2016年7月对抚仙湖进行采样调查,研究抚仙湖超微型浮游藻类（超微藻）的空间分布特征及关键影响因子。结果表明,抚仙湖超微藻平均丰度为（8.58±3.25）×10³个/mL,其中超微蓝藻丰度显著高于超微真核藻。超微藻丰度在沿岸带较高,敞水区相对较低,北部最深点低于南部最深点;垂直方向上,超微藻丰度在水下10 m处达到最大值,随着深度的增加丰度逐渐下降。通过方差膨胀因子分析和建模得到超微藻丰度和环境因子的相关关系,水体的浊度、pH以及总磷对超微真核藻丰度有显著影响,而超微蓝藻的丰度主要是受到总磷的影响。结合流式细胞分选和高通量测序得到了抚仙湖超微真核藻的群落结构特征,主要是金藻纲、硅藻纲、甲藻纲等,其中金藻纲占绝对优势。在空间上,不同湖区和不同深度超微真核藻的群落组成也存在差异：表层水体以金藻纲、硅藻纲、甲藻纲为主;而在深层水体中超微真核藻的多样性降低,金藻纲为优势种。超微藻作为贫营养湖泊初级生产力的主要贡献者,对其组成和分布的研究有助于更全面的认识抚仙湖生态系统结构和功能。     

Ready player one? Autophagy shapes resistance to photodynamic therapy in cancers

Photodynamic therapy (PDT) is a procedure used in cancer therapy that has been shown to be useful for certain indications. Considerable evidence suggests that PDT might be superior to conventional modalities for some indications. In this report, we examine the relationship between PDT responsiveness and autophagy, which can exert a cytoprotective effect. Autophagy is an essential physiological process that maintains cellular homeostasis by degrading dysfunctional or impaired cellular components and organelles via a lysosome-based pathway. Autophagy, which includes macroautophagy and microautophagy, can be a factor that decreases or abolishes responses to various therapeutic protocols. We systematically discuss the mechanisms underlying cell-fate decisions elicited by PDT; analyse the principles of PDT-induced autophagy, macroautophagy and microautophagy; and present evidence to support the notion that autophagy is a critical mechanism in resistance to PDT. A combined strategy involving autophagy inhibitors may be able to further enhance PDT efficacy. Finally, we provide suggestions for future studies, note where our understanding of the relevant molecular regulators is deficient, and discuss the correlations among PDT-induced resistance and autophagy, especially microautophagy.     

A polysaccharide from the dried rhizome of Drynaria fortunei (Kunze) J. Sm. prevents ovariectomized (OVX)-induced osteoporosis in rats

In the present study, a homogenous polysaccharide (DFPW) was isolated and purified from the dried rhizome of Drynaria fortunei, and its protective effect against osteoporosis was investigated in ovariectomized (OVX) rats. Histological analysis indicated that oral administration of DFPW (100 and 400 mg/kg) for 12 weeks significantly improved trabecular bone mass, as demonstrated by the increase in trabecular area, trabecular thickness and its number in OVX rats. Furthermore, the decline of bone mineral density and bone mineral content including Ca, P and Mg induced by OVX was reversed by the DFPW administration. This function was achieved by the decreased levels of the bone turnover markers, such as serum ALP, urinary deoxypyridinoline (DPD), Ca and P excretions. Besides, DFPW improved biomechanical parameters (maximum load, energy, Young's, modulus and maximum stress) to strengthen the hardness and strength femoral diaphysis in OVX rats. These results strongly suggested that DFPW might be a hopeful alternative therapeutics to treat postmenopausal osteoporosis.