靶向RNA的CRISPR-Cas系统研究进展

CRISPR(clustered regularly interspaced short palindromic repeats)-Cas(CRISPR associated proteins)系统是细菌和古细菌抵抗噬菌体、质粒等外源遗传物质的一种适应性免疫系统,该系统利用一种特殊的RNA(CRISPR RNA,crRNA)指导的内切酶来切割与crRNA相互补的外源遗传物质,从而阻碍外源核酸的侵染。根据效应复合物组成形式的不同,CRISPR-Cas系统分为1类(Ⅰ型、Ⅳ型和Ⅲ型)和2类(Ⅱ型、Ⅴ型和Ⅵ型)两大类。目前已发现多个CRISPR-Cas系统具有非常强的特异靶向RNA编辑能力,如Ⅵ型CRISPR-Cas13系统和Ⅲ型CRISPR-Cas7-11系统。随着研究的深入,相关系统在RNA编辑领域应用日渐广泛,使其成为基因编辑的有力工具。本文介绍了靶向RNA的CRISPR-Cas系统的组成、结构、分子机制以及其潜在应用,这为更好地研究该类系统的作用机制奠定基础,也为后期开发为稳定的基因编辑工具提供新的思路。     

应用PCR对尖锐湿疣和外耳道乳头状瘤中HPV DNA的分型检测

从手术切除的24例女性和12例男性尖锐湿疣新鲜标本中,以及42例女性尖锐湿疣、16例男性外耳道乳头状瘤和4例女性假性湿疣的石蜡包埋标本中,提取组织的基因组DNA,用人工合成的人乳头瘤病毒6.11和16型E6区特异性寡聚核苷酸引物,通过PCR进行HPV DNA的分型检测。结果66例女性尖锐湿疣中,感染HPV6型者4例,感染11型者12例,6+11型混合感染者49例;阴性1例,总检出率达98.4％。4例女性假性湿疣中1例为HPV6型感染,阳性率25％。16例男性外耳道乳头状瘤中HPV6+11型感染者5例,6+16型感染者3例,6+11+16型多重感染者8例,阳性率100％。12例男性尖锐湿疣中,HPV11型感染者7例,6+11型4例,阴性1例,总阳性率91.6％。还对细胞学上空泡化和非典型空泡化尖锐湿疣标本的HPV感染做了比较,未发现差异。     

城市绿地动物声景的时空特征及其驱动因素

动物群落是构成城市绿地生态系统的关键要素,声景作为野生动物重要的生态信息,掌握其时空变化及其影响因素,对于指导城市绿地景观设计与生物多样性保护具有重要意义。本文以Web of Science数据库的核心合集2005–2022年收录的67篇研究文献为对象,综合梳理与分析了城市绿地动物声景的时空模式及其驱动因素。城市绿地动物声景在空间上表现出环境空间梯度和植被空间结构的差异,动物声音多样性随海拔、纬度、城市化程度的降低以及植被类型和高度的增加呈现升高趋势。时间尺度呈现出昼夜、季节和年度变化差异,表现为鸟类在黎明和黄昏合唱、昆虫和两栖动物在夜间鸣叫以及季节性和年度性发声规律等。影响城市动物声景模式的因素主要包括植被、环境、人为干扰和动物自身驱动等。动物声景作为当前声景生态学研究的热点之一,面临大时空尺度演变规律研究不足、动物声景分析有限等挑战,建议未来着重开展多时空尺度变化规律研究、创新动物声景分析方法、定量解析影响因素及其响应机制、建立全球动物声景数据库等。     

人参木属—五加科一新属

本文报导五加科一新属,人参本属Chengiopanax Shang et J.Y.Huang,新组合2种,即华人参木Ch.fargesii(Franch.)Shang et J.Y.Hung及人参木Ch.sciadophylloides(Franch.et Sav.)Shang et J.Y.Huang。     

Systematics of Mukdenia and Oresitrophe (Saxifragaceae): Insights from genome skimming data

Oresitrophe and Mukdenia (Saxifragaceae) are epilithic sister genera used in traditional Chinese medicine. The taxonomy of Mukdenia, especially of M. acanthifolia, has been controversial. To address this, we produced plastid and mitochondrial data using genome skimming for Mukdenia acanthifolia and Mukdenia rossii, including three individuals of each species. We assembled complete plastomes, mitochondrial CDS and nuclear ribosomal ETS/ITS sequences using these data. Comparative analysis shows that the plastomes of Mukdenia and Oresitrophe are relatively conservative in terms of genome size, structure, gene content, RNA editing sites and codon usage. Five plastid regions that represent hotspots of change (trnH-psbA, psbC-trnS, trnM-atpE, petA-psbJ and ccsA-ndhD) are identified within Mukdenia, and six regions (trnH-psbA, petN-psbM, trnM-atpE, rps16-trnQ, ycf1 and ndhF) contain a higher number of species-specific parsimony-informative sites that may serve as potential DNA barcodes for species identification. To infer phylogenetic relationships between Mukdenia and Oresitrophe, we combined our data with published data based on three different datasets. The monophyly of each species (Oresitrophe rupifraga, M. acanthifolia and M. rossii) and the inferred topology ((M. rossii, M. acanthifolia), O. rupifraga) are well supported in trees reconstructed using the complete plastome sequences, but M. acanthifolia and M. rossii did not form a separate clade in the trees based on ETS + ITS data, while the mitochondrial CDS trees are not well-resolved. We found low recovery of genes in the Angiosperms353 target enrichment panel from our unenriched genome skimming data. Hybridization or incomplete lineage sorting may be the cause of discordance between trees reconstructed from organellar and nuclear data. Considering its morphological distinctiveness and our molecular phylogenetic results, we strongly recommend that M. acanthifolia be treated as a distinct species.     

Vegetable biology and breeding in the genomics era

Vegetable crops provide a rich source of essential nutrients for humanity and represent critical economic values to global rural societies. However, genetic studies of vegetable crops have lagged behind major food crops, such as rice, wheat and maize, thereby limiting the application of molecular breeding. In the past decades, genome sequencing technologies have been increasingly applied in genetic studies and breeding of vegetables. In this review, we recapitulate recent progress on reference genome construction, population genomics and the exploitation of multi-omics datasets in vegetable crops. These advances have enabled an in-depth understanding of their domestication and evolution, and facilitated the genetic dissection of numerous agronomic traits, which jointly expedites the exploitation of state-of-the-art biotechnologies in vegetable breeding. We further provide perspectives of further directions for vegetable genomics and indicate how the ever-increasing omics data could accelerate genetic, biological studies and breeding in vegetable crops.

     

高维非自治系统的周期解

本文通过建立并利用齐次线性方程解的估计公式,获得了周期系统（1）的周期解的存在性、唯一性定理,对周期系统（2）给出了一个平稳振荡定理,最后给出了实例。     

CaM BP－10对NAD激酶的抑制效应

ＮＡＤ激酶在光合作用等植物生理过程中起重要作用。ＮＡＤ激酶的激活依赖于钙离子和钙调素（ＣａｌｍＯｄｕｌｉｎ,ＣａＭ）．从植物中分离得到的一种新的ＣａＭ结合蛋白ＣａＭＢＰ－１０（ＢＰ－１０）明显抑制ＮＡＤ激酶的激活活性,抑制作用可被ＣａＭ所克服．动力学研究表明,抑制效应是ＢＰ－１０与ＣａＭ之间特异性相互作用的结果。实验证实ＢＰ－１０对ＮＡＤ激酶活性起着重要调节作用．     

载脂蛋白AⅡ保护内皮细胞的实验研究

以细胞形态观察、细胞存活率、乳酸脱氢酶释放和前列环素测定等方面研究载脂蛋白AⅡ保护内皮细胞的作用.结果显示,载脂蛋白AⅡ可部分拮抗低密度脂蛋白对内皮细胞的损伤作用, 维持内皮细胞形态基本正常,乳酸脱氢酶释放减少,前列环素合成增加.     

苯并噻唑醌类化合物对呼吸链酶系的抑制作用

合成了2-氯-5-正十二硫烷基-6-甲基-4,7-苯并噻唑醌(2-Cl-DMMDBT)和2-氯-5-正丁烷氨基-6-甲基-4,7-苯并噻唑醌(2-Cl-BAMDBT)两种化合物,研究了它们对线粒体呼吸链酶系的抑制作用.结果表明:2-Cl-DMMDBT和2-C1-BAMDBT对琥珀酸氧化酶及泛醌氧化酶的电子传递活性均表现一定的抑制作用,而对细胞色素氧化酶无作用,说明二者的抑制作用发生在泛醌反应区.二者对NADH氧化酶的抑制行为略有不同,2-Cl-DMMDBT是一个逐渐加强的过程,最终可致酶活性完全抑制,而2-Cl-BAMDBT则表现为瞬间抑制.比较了2-Cl-DMMDBT和2-Cl-BAMDBT对琥珀酸氧化酶的抑制能力,长侧链的2-Cl-DMMDBT比短侧链的2-Cl-BAMDBT抑制能力强很多.