Modeling the synergy between HSV-2 and HIV and potential impact of HSV-2 therapy

Mounting evidence indicates that genital HSV-2 infection may increase susceptibility to HIV infection and that co-infection may increase infectiousness. Accordingly, antiviral treatment of people with HSV-2 may mitigate the incidence of HIV in populations where both pathogens occur. To better understand the epidemiological synergy between HIV and HSV-2, we formulate a deterministic compartmental model that describes the transmission dynamics of these pathogens. Unlike earlier models, ours incorporates gender and heterogeneous mixing between activity groups. We derive explicit expressions for the reproduction numbers of HSV-2 and HIV, as well as the invasion reproduction numbers via next generation matrices. A qualitative analysis of the system includes the local and global behavior of the model. Simulations reinforce these analytical results and demonstrate epidemiological synergy between HSV-2 and HIV. In particular, numerical results show that HSV-2 favors the invasion of HIV, may dramatically increase the peak as well as reducing the time-to-peak of HIV prevalence, and almost certainly has exacerbated HIV epidemics. The potential population-level impact of HSV-2 on HIV is demonstrated by calculating the fraction of HIV infections attributable to HSV-2 and the difference between HIV prevalence in the presence and absence of HSV-2. The potential impact of treating people with HSV-2 on HIV control is demonstrated by comparing HIV prevalence with and without HSV-2 therapy. Most importantly, we illustrate that the aforementioned aspects of the population dynamics can be significantly influenced by the sexual structure of the population.     

Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes

Mitochondrial retrograde regulation (MRR) is the transduction of mitochondrial signals to mediate nuclear gene expression. It is not clear whether MRR is a common regulation mechanism in plant abiotic stress response. In this study, we analysed the early abiotic stress response of the rice OsAOX1 genes, and the induction of OsAOX1a and OsAOX1b (OsAOX1a/b) was selected as a working model for the stress‐induced MRR studies. We found that the induction mediated by the superoxide ion (O_2·^‐)‐generating chemical methyl viologen was stronger than that of hydrogen peroxide (H₂O₂). The addition of reactive oxygen species (ROS) scavengers demonstrated that the stress induction was reduced by eliminating O_2·^‐. Furthermore, the stress induction did not rely on chloroplast‐ or cytosol‐derived O_2·^‐. Next, we generated transgenic plants overexpressing the superoxide dismutase (SOD) gene at different subcellular locations. The results suggest that only the mitochondrial SOD, OsMSD, attenuated the stress induction of OsAOX1a/b specifically. Therefore, our findings demonstrate that abiotic stress initiates the MRR on OsAOX1a/b and that mitochondrial O_2·^– is involved in the process.     

Analysis of the local organization and dynamics of cellular actin networks

A ctin filaments, with the aid of multiple accessory proteins, self-assemble into a variety of network patterns. We studied the organization and dynamics of the actin network in nonadhesive regions of cells bridging fibronectin-coated adhesive strips. The network was formed by actin nodes associated with and linked by myosin II and containing the formin disheveled-associated activator of morphogenesis 1 (DAAM1) and the cross-linker filamin A (FlnA). After Latrunculin A (LatA) addition, actin nodes appeared to be more prominent and demonstrated drift-diffusion motion. Superresolution microscopy revealed that, in untreated cells, DAAM1 formed patches with a similar spatial arrangement to the actin nodes. Node movement (diffusion coefficient and velocity) in LatA-treated cells was dependent on the level and activity of myosin IIA, DAAM1, and FlnA. Based on our results, we developed a computational model of the dynamic formin-filamin-actin asters that can self-organize into a contractile actomyosin network. We suggest that such networks are critical for connecting distant parts of the cell to maintain the mechanical coherence of the cytoplasm.     

High-Efficiency Thermal Asymmetric Interlaced PCR (hiTAIL-PCR) for Determination of a Highly Degenerated Prophage WO Genome in a Wolbachia Strain Infecting a Fig Wasp Species

Temperate bacteriophage WO is a model system for studying tripartite interactions among viruses, bacteria, and eukaryotes, especially investigations of the genomic stability of obligate intracellular bacteria. Few WO genomes exist because of the difficulty in isolating viral DNA from eukaryotic hosts, and most reports are by-products of Wolbachia sequencing. Only one partial genome of a WO phage has been determined directly from isolated particles. We determine the complete genome sequence of prophage WO (WOSol) in Wolbachia strain wSol, which infects the fig wasp Ceratosolen solmsi (Hymenoptera: Chalcidoidea), by high-efficiency thermal asymmetric interlaced PCR. The genome of WOSol is highly degenerated and disrupted by a large region (14,267 bp) from Wolbachia. Consistent with previous molecular studies of multiple WO genomes, the genome of WOSol appears to have evolved by single nucleotide mutations and recombinations.     

Plasticity of diel patterns in the diet and habitat use of feral, non-native fathead minnow Pimephales promelas (Actinopterygii, Cyprinidae) in a pond-dwelling population in England

The aim of the study was to test for diel patterns in the diet and habitat use in a feral, pond-dwelling, non-native fathead minnow Pimephales promelas population in England. Fish were collected in June 2009 using traps set in four habitat types (open waters, rushes??Juncus effusus, weeds??Potamogeton natans and mixed vegetation), then sexed and measured for total length and eviscerated weight in the laboratory. Data were analysed at 6-h intervals, with Fulton??s condition index and three dietary parameters (frequency of occurrence, number and weight) calculated. Minor diurnal differences in habitat use were observed in males, females and immatures, and these may be due to predator avoidance. Body condition varied greatly in rushes during daytime, probably due to shifts in habitat suitability (e.g. food, refuge). Detritus dominates the diet of native fathead minnow; however, planktonic crustaceans were the most important food resource for this population, with a clear ontogenetic shift, irrespective of habitat, towards greater proportion of ingested detritus in larger individuals. Overall, the results demonstrate that feral fathead minnows display substantial trophic plasticity and a wide range of habitat use, which is normally associated with invasive species. However, established fathead minnow populations in Europe are rare despite its wide-spread ornamental and scientific use.     

广西马山岩溶植被年龄序列的群落特征

石漠化地区是我国西南植被恢复和生态重建的重点和难点地区。通过对马山县岩溶植被年龄序列(石漠、草丛、灌丛、小乔林和成熟林)5个演替阶段15个样地(20 m×50 m)的系统取样调查,研究了停止人为干扰后岩溶植被的更新、演替及群落特征的变化。结果表明:沿石漠、草丛、灌丛、小乔林、成熟林的顺向演替发展,群落各层次的覆盖度存在显著差异(P<0.05),乔木层覆盖度以成熟林最大,灌木层覆盖度以小乔林最高,而草本层覆盖度以灌丛最高;重要值≥10.00的科、属、种最大值出现在小乔林;不同演替阶段群落不同层次的结构明显不同,乔木层的植物密度存在显著差异(P<0.05),以小乔林最高;成熟林灌木层的植物密度显著低于小乔林和草丛(P<0.05),与石漠和灌丛差异不显著(P>0.05);森林阶段草本层的植物密度显著低于灌丛、草丛和石漠(P<0.05);群落的物种丰富度随着顺向演替发展而增加,但不同演替阶段不同层次的丰富度变化不同,草本层的物种丰富度以草丛阶段最大,成熟林最小;灌木层的丰富度以小乔林阶段最大,石漠阶段最小;乔木层的丰富度以小乔林最大,成熟林有所下降;不同演替阶段群落草本层的生态优势度无显著差异(P>0.05),而灌木层和乔木层均存在显著差异(P<0.05)。岩溶植被恢复可分为恶劣物理环境阈值和顶极种缺乏的阈值两个阶段,每一个阶段内由不同功能特征的驱动种和关键种决定着群落的演替方向和速度,越接近演替后期,顶极种越丰富,群落驱动种和关键种向高级、大型和长寿植物发展的趋势越明显。     

艾比湖地区土壤呼吸对季节性冻土厚度变化的响应

利用LI-8100土壤CO2排放通量全自动测量系统,于2010年1～4月测定了艾比湖地区不同植被类型样地的土壤呼吸速率,结合环境因子、冻土厚度及室内土壤理化性质分析,探讨了温带干旱区季节性冻土厚度变化对土壤呼吸的影响。结果表明：土壤温度在冻结期是影响冻土厚度的最主要环境因子,而解冻期冻土厚度变化与土壤温度等环境因子关系不显著（P>0.05）;冻土厚度在不同时期影响土壤呼吸速率的程度不同,冻结期两者呈显著正相关（R2=0.782,P<0.05）,解冻初期两者呈弱相关（P>0.05）;土壤呼吸速率在土壤冻结期与解冻初期不存在显著差异（P>0.05）,但在解冻完全期则表现出明显的增加趋势（差值为0.14～0.37μmol?m-2?s-1）,表明冻土融化会明显地增加土壤碳排放,从而增加大气中的CO2。研究结果初步阐明了艾比湖地区季节性冻土厚度变化对土壤呼吸的影响,为揭示全球变暖背景下冻土退化过程中的碳释放机理提供理论基础。     

成都平原北部水稻土重金属含量状况及其潜在生态风险评价

为了解成都平原水稻土重金属含量状况和潜在的生态风险,选取成都平原北部水稻土典型区域为研究对象,采集了158个表层土壤样品,分析了土壤中pH值和Cd、Cu、As、Hg、Pb、Cr、Ni 7种重金属元素含量,以20世纪80年代测定的成都平原土壤重金属元素背景值为评价标准,采用Hakanson潜在生态危害指数法对研究区域的重金属潜在生态风险进行了评价。结果表明:研究区域水稻土Cd、Hg、Ni、Cu、Pb、Cr和As平均含量分别为0.709、0.187、32.08、34.12、31.52、82.13 mg/kg和7.25 mg/kg;Cd、Ni、Cu和Hg 4种重金属超过《土壤环境质量标准》(GB15618-1995) Ⅱ级标准值样本比例分别为87.34%、8.23%、3.80%和3.80%,Cd含量超标严重。7种重金属元素变异系数幅度为18.35%-49.03%,由大到小依次为Cd、Hg、Cu、As、Ni、Cr、Pb。75.32%的样本达到中度或较强重金属潜在生态风险,区域整体表现为中度潜在生态风险(RI平均值为198.65),Cd和Hg为高生态风险元素,对潜在生态风险贡献率分别为62.27%和20.78%,As、Pb、Cu、Ni、Cr为低生态风险元素;风险概率图显示城区周边和绵远河沿线的潜在生态风险等级较高。因此,成都平原水稻土农业生产中应采取一定的措施防控农产品Cd和Hg污染。     

生态植被建设对黄土高原农林复合流域景观格局的影响

自1999年以来,黄土高原大规模地实施了退耕还林工程,生态环境呈显著恢复态势。采用2002年和2008年两期Spot5遥感影像,评估了退耕还林工程实施前后黄土高原典型农林复合流域土地利用与景观格局的动态变化。结果表明:在退耕还林工程实施的驱动下,流域土地利用变化剧烈,总变化率高达36.77%,主要变化的土地利用类型包括耕地、果园、幼林地、林地等。28.95%的耕地转为其他土地利用类型,其中48.83%转为果园,44.69%转为幼林地。景观格局变化呈明显的空间分布规律,山腰缓坡区以转化为果园为主,中、高海拔多转化为幼林地。退耕后流域生态景观得以优化,呈现良好发展态势。