基于焦磷酸测序技术建立基因编辑水稻检测方法

基因编辑技术发展迅速,但对应的检测方法较少。为寻找创建基因编辑作物适用的检测方法,以 PL3 基因编辑水稻编辑位点为靶标,有效设计了焦磷酸测序的扩增引物及测序引物,并进行有效性检测,分别利用Sequence to Analyze等程序以及SNP和AQ两种模式完成了对PL3 基因的定性和定量检测试验,建立了 PL3 基因编辑水稻编辑位点焦磷酸测序检测方法。结果表明,基于焦磷酸测序技术可以通过检测编辑位点从而将基因编辑型水稻与野生型水稻进行区分。与常规的转基因检测方法相比,该检测方法具有较好的准确性、高效性及高灵敏度等优点,在基因编辑型水稻编辑位点定性和定量检测分析方面具有很好的应用前景。     

LncRNA AWPPH as a prognostic predictor in human cancers in Chinese population: evidence from meta-analysis

Background: Long non-coding RNA associated with poor prognosis of hepatocellular carcinoma (AWPPH) is dysregulated in a variety of human cancers. However, the prognostic value of AWPPH in various cancers remains unclear.Methods: Comprehensive literature search was performed in PubMed, Web of Science, CNKI and Wangfang databases, and eligible studies were obtained according to the inclusion and exclusion criteria. The pooled hazard ratios (HRs) and odds ratios (ORs) were applied to assess the clinical value of AWPPH expression for overall survival (OS) and clinicopathological features.Results: A total of 19 articles including 1699 cancer patients were included in the study. The pooled results demonstrated that evaluated AWPPH expression was positively related to a poorer overall survival of patients with cancers (HR = 1.79, 95%CI: 1.44–2.14, P<0.001). Subgroup analysis revealed that tumor type and sample size affect the predictive value of AWPPH on OS, whereas cut-off value and HR estimation method have no impact on it. In addition, the pooled data also showed that AWPPH was positively linked to advanced TNM stage (OR = 2.50, 95%CI: 1.94–3.22, P<0.001), bigger tumor size (OR = 2.64, 95%CI: 1.47–4.73, P=0.001), macro-vascular invasion (OR = 2.08, 95%CI: 1.04–4.16, P=0.04) and lymph node metastasis (OR = 2.68, 95%CI: 1.82–3.96, P<0.001). Moreover, the results of the trim and fill analysis confirmed the reliability of our finding.Conclusions: Up-regulation of AWPPH was associated with advanced TNM stage, bigger tumor size, worse lymph node metastasis, macro-vascular invasion and shorter overall survival, suggesting that AWPPH may serve as a biomarker for prognosis and clinicopathological characteristics in human cancers among the Chinese population.     

Effects of oxytetracycline on plant growth,phosphorus uptake,and carboxylates in the rhizosheath of alfalfa

Plant and Soil - Residues of antibiotics such as oxytetracycline (OTC) in soil can affect microbial compositions and activities, thus affecting soil P availability, and consequently plant P uptake...     

Antifungal Effect of Long Noncoding RNA 9708-1 in the Vulvovaginal Candidiasis Murine Model

Mycopathologia - Vulvovaginal candidiasis (VVC) caused by Candida spp. affects 70–75% of women at least once during their lives. We aim to elucidate the potential mechanism of VVC and...     

柞蚕微粒子病潜在生物标志物的挖掘

【目的】挖掘柞蚕Antheraea pernyi微粒子病的潜在生物标志物,为开发该病害检测方法及研究柞蚕被微孢子虫Nosema pernyi侵染后体内代谢产物的差异及功能奠定基础。【方法】利用高效液相色谱和高分辨率质谱进行非靶向代谢组学分析,调查健康和患微粒子病柞蚕雌成虫血淋巴中代谢物差异。【结果】正离子模式下从健康和患微粒子病柞蚕雌成虫血淋巴中共获得8 870个代谢物,注释代谢物5 390个,筛选到差异表达代谢物472个(上调260个,下调212个),其中二级鉴定差异表达代谢物12个(上调8个,下调4个);负离子模式下获得6 716个代谢物,注释代谢物3 848个,筛选到差异表达代谢物301个(上调207个,下调94个),其中二级鉴定差异表达代谢物9个(上调8个,下调1个)。正离子模式下二级鉴定的差异表达代谢物包括缬氨酸(valine)、苯并噻唑(benzothiazole)、3-脱羟基肉碱(3-dehydroxycarnitine)、1 甲基鸟嘌呤(1-methylguanine)、2-乙氧基萘(2-ethoxynaphthalene)、N6-乙酰基-L-赖氨酸(N6-acetyl-L-lysine)、生物素(biotin)、桑色素(morin)、噻吗洛尔(timolol)、酰基肉碱15∶0(acylcarnitine 15∶0)、酰基肉碱18∶4(acylcarnitine 18∶4)和异槲皮苷(isoquercitrin);负离子模式下二级鉴定的差异表达代谢物包括二甲基丙二酸(dimethylmalonic acid)、戊二酸(glutaric acid)、2,5-二羟基苯甲酸(2,5-dihydroxybenzoic acid)、1,3-二乙酰基丙烷(1,3-diacetylpropane)、3-(4-羟基苯基)乳酸(DL-p-hydroxyphenyllactic acid)、泛酸(pantothenate)、荧光素(fluorescein)、飞燕草素-3-O-beta-吡喃葡萄糖苷(delphinidin-3-O-beta-glucopyranoside)和溶血磷酯酰肌醇16∶1 (lysoPI 16∶1)。【结论】健康与患柞蚕微粒子病的柞蚕雌成虫血淋巴内代谢物具有显著差异,通过代谢组学挖掘出21个二级鉴定的差异表达代谢物,这些代谢物可作为潜在生物标志物用于开发柞蚕微粒子病的检测方法。     

弗里熊蜂蜜罐中糖液成分分析

【目的】熊蜂是众多植物的重要传粉昆虫,以采集并贮藏花蜜和花粉为主要食物。本研究旨在探究熊蜂的营养需求及明确其对采集的食物是否存在酿制过程。【方法】利用白砂糖溶液(糖浓度50%)饲喂弗里熊蜂Bombus friseanus蜂群,收集并检测其贮藏在蜜罐中1~7 d的糖液,作为处理组样品;同时将上述白砂糖溶液置于灭菌离心管中,排除熊蜂取食,作为对照组样品,测定贮藏期间处理组和对照组糖液的pH值、糖浓度、糖组分及α-淀粉酶和转化酶活性。【结果】弗里熊蜂B. friseanus贮藏在蜜中1~7d的糖液pH值平均为3.74±0.13,显著低于对照组(6.55±0.15);糖浓度与贮藏时间显著正相关,贮藏6d后糖浓度显著高于贮藏1~3 d时的;糖液组分更加丰富,除蔗糖外利用HPLC还检出果糖、葡萄糖、麦芽糖和海藻糖,贮藏4~5 d的糖液中己糖含量极显著高于贮藏1~3 d和6~7 d时的,己糖和麦芽糖含量分别与蔗糖含量极显著负相关,总糖中果糖和麦芽糖含量与贮藏时间极显著负相关,葡萄糖、蔗糖和海藻糖的含量分别与贮藏时间极显著正相关。贮藏6 d的糖液中α-淀粉酶活性显著高于其他时间,其他贮藏时间样品间α-淀粉酶活性差异不显著,而所有样本的转化酶活性在21.17~38.05 U/g FW之间,随贮藏时间的延长差异不显著。【结论】弗里熊蜂B. friseanus采集人工饲喂的糖溶液贮藏在蜜罐中,经其加工后发生了物理和生物化学变化,揭示熊蜂存在酿蜜能力。本研究的结果为熊蜂生物学及繁育研究提供了参考。     

The role of corals on the abundance of a fish ectoparasite in the Great Barrier Reef

Coral Reefs - Gnathiid isopods, common fish ectoparasites, can affect fish physiology, behaviour and survival. Gnathiid juveniles emerge from the benthos to feed on fish blood. In the Caribbean,...