Suppression of interleukin-2 and interleukin-2 receptor expression in Jurkat cells stably expressing the human immunodeficiency virus Tat protein.

The Jurkat T cell line was stably transfected with an Epstein-Barr virus-based episomal replicon designed to express high levels of the HIV-1 Tat protein. After selection in hygromycin B, high-level Tat activity was detected in 3 of 18 transfected cell lines. After stimulation with phytohemagglutinin (PHA) and phorbol myristate acetate (PMA), Tat transfectants with high Tat expression showed diminished expression of interleukin-2 (IL-2) and the interleukin-2 receptor alpha chain (IL-2R) when compared to untransfected Jurkat cells or Jurkat cell lines transfected with the parent control plasmid. Sublines derived from the high-level Tat transfectants with reduced Tat activity showed normalization of PHA/PMA-induced IL-2 expression. Northern analysis showed diminished expression of IL-2 and IL-2R mRNA in the stimulated Tat transfectants. Inhibition of IL-2 and IL-2R expression by the HIV-1 Tat protein may contribute to the immune suppression that characterizes HIV-1 infection.     

Human sperm characteristics during frequent ejaculation

Sperm concentration, morphology, DNA condensation and nuclear protein pattern as well as sperm adenylate cyclase were evaluated in semen samples provided by 7 volunteers every 8 h for 2 days. During the observation period, sperm concentration and total sperm number decreased but began to return towards normal after a 3-day abstinence period. No increase in the proportion of immature sperm cells was observed by light microscopy. Total adenylate cyclase (EC 4.6.1.1) increased significantly per cell, due to an increase in the soluble component while the particulate component remained relatively constant. Microflow fluorometry revealed no consistent alterations in the DNA or nuclear protein distribution. We conclude that although a high frequency of ejaculation does not disturb the conventional measures of sperm integrity, such as DNA condensation, there are major changes in at least one biochemical measurement, the activity of soluble adenylate cyclase.     

Auditory physiology: cortical assistance for the auditory signals-to-symbols transformation

How the temporal information that is crucial for understanding speech and music is processed in the brain is poorly understood, but a new study shows how the auditory cortex is tuned to the spectro-temporal acoustic features characteristic of natural biological sounds.     

Designing convergent cellular automata

Cellular automata (CA) have been used by biologists to study dynamic non-linear systems where the interaction between cell behaviour and end-pattern is investigated. It is difficult to achieve convergence of a CA towards a specific static pattern and a common solution is to use genetic algorithms and evolve a ruleset that describes cell behaviour. This paper presents an alternative means of designing CA to converge to specific static patterns. A matrix model is introduced and analysed then a design algorithm is demonstrated. The algorithm is significantly less computationally intensive than equivalent evolutionary algorithms, and not limited in scale, complexity or number of dimensions.     

Where do species' geographic ranges stop and why? Landscape impermeability and the Afrotropical avifauna

Although understanding large-scale spatial variation in species'' distributions is a major goal in macroecology, relatively little attention has been paid to the factors limiting species'' ranges. An understanding of these factors may improve predictions of species'' movements in response to global change. We present a measure of landscape impermeability, defined as the proportion of resident species whose ranges end in an area. We quantify and map impermeability for Afrotropical birds and use multi-model inference to assess support for a wide suite of hypotheses about its potential environmental correlates. Non-spatial analyses emphasize the importance of broad-scale environmental patterns of energy availability and habitat heterogeneity in limiting species'' distributions. Conversely, spatial analyses focus attention on small-scale factors of habitat and topographic complexity. These results hold even when only species from the top quartile of range sizes are assessed. All our analyses highlight that range edges are concentrated in heterogeneous habitats. Global change is expected to alter the nature and distribution of such habitats, necessitating range movement by many resident species. Therefore, impermeability provides a simple measure for identifying regions, where continuing global change and human encroachment are likely to cause profound changes in regional diversity patterns.     

Geographical variation in predictors of mammalian extinction risk: big is bad, but only in the tropics

Whereas previous studies have investigated correlates of extinction risk either at global or regional scales, our study explicitly models regional effects of anthropogenic threats and biological traits across the globe. Using phylogenetic comparative methods with a newly-updated supertree of 5020 extant mammals, we investigate the impact of species traits on extinction risk within each WWF ecoregion. Our analyses reveal strong geographical variation in the influence of traits on risk: notably, larger species are at higher risk only in tropical regions. We then relate these patterns to current and recent-historical human impacts across ecoregions using spatial modelling. The body–mass results apparently reflect historical declines of large species outside the tropics due to large-scale land conversion. Narrow-ranged and rare species tend to be at high risk in areas of high current human impacts. The interactions we describe between biological traits and anthropogenic threats increase understanding of the processes determining extinction risk.