Substrate specificities of recombinant murine Golgi alpha1, 2- mannosidases IA and IB and comparison with endoplasmic reticulum and Golgi processing alpha1,2-mannosidases

The catalytic domains of murine Golgi alpha1,2-mannosidases IA and IB that are involved in N-glycan processing were expressed as secreted proteins in P.pastoris . Recombinant mannosidases IA and IB both required divalent cations for activity, were inhibited by deoxymannojirimycin and kifunensine, and exhibited similar catalytic constants using Manalpha1,2Manalpha-O-CH3as substrate. Mannosidase IA was purified as a 50 kDa catalytically active soluble fragment and shown to be an inverting glycosidase. Recombinant mannosidases IA and IB were used to cleave Man9GlcNAc and the isomers produced were identified by high performance liquid chromatography and proton-nuclear magnetic resonance spectroscopy. Man9GlcNAc was rapidly cleaved by both enzymes to Man6GlcNAc, followed by a much slower conversion to Man5GlcNAc. The same isomers of Man7GlcNAc and Man6GlcNAc were produced by both enzymes but different isomers of Man8GlcNAc were formed. When Man8GlcNAc (Man8B isomer) was used as substrate, rapid conversion to Man5GlcNAc was observed, and the same oligosaccharide isomer intermediates were formed by both enzymes. These results combined with proton-nuclear magnetic resonance spectroscopy data demonstrate that it is the terminal alpha1, 2-mannose residue missing in the Man8B isomer that is cleaved from Man9GlcNAc at a much slower rate. When rat liver endoplasmic reticulum membrane extracts were incubated with Man9GlcNAc2, Man8GlcNAc2was the major product and Man8B was the major isomer. In contrast, rat liver Golgi membranes rapidly cleaved Man9GlcNAc2to Man6GlcNAc2and more slowly to Man5GlcNAc2. In this case all three isomers of Man8GlcNAc2were formed as intermediates, but a distinctive isomer, Man8A, was predominant. Antiserum to recombinant mannosidase IA immunoprecipitated an enzyme from Golgi extracts with the same specificity as recombinant mannosidase IA. These immunodepleted membranes were enriched in a Man9GlcNAc2to Man8GlcNAc2- cleaving activity forming predominantly the Man8B isomer. These results suggest that mannosidases IA and IB in Golgi membranes prefer the Man8B isomer generated by a complementary mannosidase that removes a single mannose from Man9GlcNAc2.      

Isolation of Alcaligenes sp. strain L6 at low oxygen concentrations and degradation of 3-chlorobenzoate via a pathway not involving (chloro)catechols.

Isolations of 3-chlorobenzoate (3CBA)-degrading aerobic bacteria under reduced O2 partial pressures yielded organisms which metabolized 3CBA via the gentisate or the protocatechuate pathway rather than via the catechol route. The 3CBA metabolism of one of these isolates, L6, which was identified as an Alcaligenes species, was studied in more detail. Resting-cell suspensions of L6 pregrown on 3CBA oxidized all known aromatic intermediates of both the gentisate and the protocatechuate pathways. Neither growth on nor respiration of catechol could be detected. Chloride production from 3CBA by L6 was strictly oxygen dependent. Cell-free extracts of 3CBA-grown L6 cells exhibited no catechol dioxygenase activity but possessed protocatechuate 3,4-dioxygenase, gentisate dioxygenase, and maleylpyruvate isomerase activities instead. In continuous culture with 3CBA as the sole growth substrate, strain L6 demonstrated an increased oxygen affinity with decreasing steady-state oxygen concentrations.     

THE STORAGE GLUCAN OF PHAEOCYSTIS GLOBOSA (PRYMNESIOPHYCEAE) CELLS1

A non-colony-forming axenic strain of Phaeocystis globosa (Harlot) Lagerheim was shown to produce a water-soluble β-d -glucan. This glucan consisted of about 20 glucose units, mainly (l→3)-linked, with branching at position 6. Therefore, it can be classified as a chrysolaminaran. Glucan production occurred mainly during the stationary growth phase and resulted in concentrations as high as 76 pg glucose per cell. When cultures were deprived of light the glucans were consumed, which supports their possible role as compounds used for temporary storage of energy.     

Genetic variation within and between lines of diabetes-prone and non-diabetes-prone BB rats; allele distribution of 8 protein markers

Twenty-four inbred and 2 outbred lines of the BB rat have been genetically characterized by establishing the allele distribution of 8 monogenic protein markers. The marker genes are: plasma alkaline phosphatase-1 (Alp-1), catalase-1 (Cs-1), carboxylesterases (Es-1, Es-2, Es-14), glyoxalase I (Glo-1), group specific component (Gc), and haemoglobin-beta-chain (Hbb). At least 3 linkage groups are represented by this set of markers. Genetic variation was found both within and between lines. Within-line variation was observed in 4 lines, including the 2 outbred lines. The other 22 lines could be subdivided into 4 groups, each representing a unique allele distribution pattern.     

Synthesis of platelet-activating factor by human blood platelets and leucocytes. Evidence against selective utilization of cellular ether-linked phospholipids

Synthesis of platelet activating factor (PAF) in blood platelet suspensions may be due to leucocyte contamination. We therefore investigated PAF synthesis in human blood platelet suspensions and granulocyte- (PMN)-enriched leucocyte suspensions upon stimulation by thrombin and Ca2+-ionophore A23187, both in the presence and absence of the presumed PAF catabolism inhibitor phenylmethylsulfonyl fluoride (PMSF). PAF synthesis was measured by aggregation of washed rabbit platelets and by [3H]acetate incorporation. In contrast to A23187, thrombin was unable to stimulate PAF synthesis by leucocytes. As thrombin did induce PAF synthesis by platelet suspensions, this was evidently not due to leucocyte contamination. A23187 also induced PAF synthesis by platelets, but this was dependent upon the platelet isolation method and possibly associated activation. The ratio of [3H]acetate incorporation into 1-alkyl- versus 1-acyl-2-acetylglycerophosphocholine upon stimulation of non-PMSF-treated leucocytes and platelets amounted to 12.8 and 1.2, respectively. These values are at least 10-fold higher than the ratio of 1-alkyl versus 1-acyl species in the cellular phosphatidylcholine precursor for PAF. By PMSF pretreatment, the distribution of incorporated [3H]acetate between 1-ether- and 1-ester-linked species became similar to that in the precursor phosphatidylcholines of the respective cell type, due to increased recovery of [3H]acetate in the acyl compounds. Both leucocyte and platelet homogenates rapidly degraded acylacetylglycerophosphocholine to (acetyl)glycerophosphocholine, and this deacylation was inhibited by PMSF pretreatment of the cells. We conclude that upon cell stimulation a phospholipase A2 converts both alkylacylglycerophosphocholine and diacylglycerophosphocholine to the 2-lysoanalogs in a ratio similar to the occurrence of the parent compounds. The acetyltransferase subsequently acetylates both compounds to acylacetylglycerophosphocholine and alkylacetylglycerophosphocholine (PAF), respectively. Deacylation of the 1-ester-linked species, either before or after acetylation, gives the impression of selective utilization of 1-ether-linked species for PAF production. It is only after inhibition of the deacylation by pretreatment of the cells with PMSF that a mainly nondiscriminative use of 1-ether- and 1-ester-linked species by both phospholipase A2 and acetyltransferase becomes evident.     

Photosynthetic bicarbonate utilization in the aquatic angiospermsPotamogeton andElodea

Summary As the CO₂ supply often limits photosynthesis a number of aquatic species use HCO ₃ ^– as carbon source as well. The use of HCO ₃ ^– leads to the production of one OH^– for every molecule/CO₂ fixed. The OH^– is excreted into the medium. We studied the mechanism of HCO ₃ ^– utilization in the leaves ofElodea andPotamogeton. In the so-called polar leaves of these plants the HCO ₃ ^– uptake takes place at the lower and OH^–-release at the upper epidermis. This flux of negative charge is balanced by a kation flux in the same direction. The use of HCO ₃ ^– and the influx of kations is accompanied by a pH drop. The release of OH^– and kations at the upper epidermis causes a raise of the pH there. The pH changes and the kation concentrations (in the present experiments K⁺) are measured by means of miniature electrodes. From this the CO₂ (including H₂CO₃), HCO ₃ ^– and CO ₃ ⁼ concentrations were calculated. When the light is turned on, after a dark period, the pH increases simultaneously at both sides for 5–10 minutes. During this so-called a-polar phase there is no K⁺ transport through the leaf. Experiments at different ambient pH's and comparison with other aquatic species shows that this initial pH raise results from CO₂ fixation. After 5–10 minutes the polar phase and HCO ₃ ^– utilization start. At the lower side the pH and [K⁺] drop, at the upper side pH and [K⁺] increase. During the a-polar phase [CO₂] at the lower epidermis decreased, as expected. Whereas in the a-polar phase the CO₂ concentration at this side very markedly increased. This sharp increase of [CO₂] may be explained either by CO₂ diffusion from the leaf cells previously taken up as HCO ₃ ^– or by a proton (H⁺) extrusion at the lower epidermis causing conversion of HCO ₃ ^– into CO₂ in the cell wall. This latter mechanism is discussed in more detail.     

The role of Fgf10 signaling in branching morphogenesis and gene expression of the rat prostate gland: lobe-specific suppression by neonatal estrogens

Brief exposure of rats to high-dose estrogen during the neonatal period interrupts prostate development in a lobe-specific manner and predisposes the gland to dysplasia with aging, a phenomenon referred to as developmental estrogenization. Our previous studies have revealed that these effects are initiated through altered steroid receptor expression; however, the immediate downstream targets remain unclear. We have recently shown that developmental expression of Shh-ptc-gli is downregulated in the dorsolateral prostate following estrogenization, and this is responsible, in part, for branching deficits observed in that prostatic region specifically. In the present study, we examine the role of Fgf10 signaling during rat prostate development and as a mediator of the developmental estrogenized phenotype. Fgf10 and FgfR2iiib localize to the distal signaling center of elongating and branching ducts in separate prostate lobes where they regulate the expression of multiple morphoregulatory genes including Shh, ptc, Bmp7, Bmp4, Hoxb13, and Nkx3.1. Ventral and lateral lobe organ cultures and mesenchyme-free ductal cultures demonstrate a direct role for Fgf10/FgfR2iiib in ductal elongation, branching, epithelial proliferation, and differentiation. Based on these findings, a model is proposed depicting the localized expression and feedback loops between several morphoregulatory factors in the developing prostate that contribute to tightly regulated branching morphogenesis. Similar to Shh-ptc-gli, neonatal estrogen exposure downregulates Fgf10, FgfR2iiib, and Bmp7 expression in the dorsolateral prostate while ventral lobe expression of these genes is unaffected. Lateral prostate organ culture experiments demonstrate that growth and branching inhibition as well as Fgf10/FgfR2iiib suppression are mediated directly at the prostatic level. Furthermore, exogenous Fgf10 fully rescues the growth and branching deficits due to estrogen exposure. Together, these studies demonstrate that alterations in Fgf10 signaling are a proximate cause of Shh-ptc-gli and Bmp7 downregulation that together result in branching inhibition of the dorsolateral prostate following neonatal estrogen exposure.     

Are biodiversity ‘hotspots’ correlated with current ecoclimatic stability? A pilot study using the NOAA-AVHRR remote sensing data

The GAC (Global Area Coverage) by the NOAA-AVHRR satellites represents an excellent data set for studying global and regional patterns of variations in surface conditions driven in part by climatic variation. In this pilot study we examined whether biodiversity hotspots, defined from peak concentrations of neoendemics as well as geographically relict forms, differ in ecoclimatic stability from surrounding areas under present-day climatic conditions. Coefficients of variation of the ratio between brightness surface temperature (Ts) and the Normalized Difference Vegetation Index (NDVI) based upon 10 years' monthly composited scenes of tropical Africa revealed distinctive geographical patterns of interannual variability in surface conditions. Regions with a predominance of old species are characterized by spatial uniformity in the ecoclimatic variability, while regions where rapidly radiating groups dominate are spatially complex in this respect. However, the exact hotspots, with peak concentrations of endemic species, are characterized by a local reduction in ecoclimatic variability, or placement on the boundary to a stable region. This relationship was supported statistically by comparing ecoclimatic profiles across montane forests representing hotspots, and those of other montane forests. It is suggested that, because of interactions between prevailing atmospheric flows, topography and vegetation, the impact of extreme weather is moderated locally. The correlation between current stability and aggregates of neoendemics as well as old relics indicate that local moderation of climatic extremes persist through shifting climatic periods, permitting populations of unique species to survive in these places. The results are used to identify study sites for better ground truthing and for paleoclimatological studies which may be useful for more thorough studies of these relationships.     

Bivalve carrying capacity in coastal ecosystems

The carrying capacity of suspension feeding bivalvesin 11 coastal and estuarine ecosystems is examined. Bivalve carrying capacity is defined in terms of watermass residence time, primary production time andbivalve clearance time. Turnover times for the 11ecosystems are compared both two and threedimensionally. Fast systems, e.g., Sylt and NorthInlet, have turnover times of days or less, while,slow systems, e.g., Delaware Bay, have turnover timesof months and years. Some systems,Marennes-Oléron, South San Francisco Bay and NorthInlet, require a net influx of phytoplankton in orderto support their bivalve populations. Three systems,Carlingford Lough, Chesapeake Bay and Delaware Bay,have very long bivalve clearance times due to small orreduced bivalve filter feeder populations. Carlingford Lough stands out because it is a naturallyplanktonic system now being converted to bivalveculture with an adherently stronger benthic-pelagiccoupling. Existing models of bivalve carrying capacity arereviewed. The Herman model is utilized as anappropriate ecosystem level model to examine carryingcapacity because it includes the three major turnovertime elements of water mass residence time, primaryproduction time and bivalve filter feeder clearancetime. The graphical analysis suggests that massive andsuccessful bivalve filter feeder populations are foundin systems with relatively short residence times(<40 days) and short primary production times (<4days) in order to sustain a high bivalve biomass withits associated rapid clearance times. Outliersystems are constrained by long water mass residencetimes, extended primary production times, and longclearance times. This revised version was published online in August 2006 with corrections to the Cover Date.     

A review of the feedbacks between bivalve grazing and ecosystem processes

This paper gives an overview of interactions betweenbivalve grazing and ecosystem processes, that mayaffect the carrying capacity of ecosystems for bivalvesuspension feeders. These interactions consist of anumber of positive and negative feedbacks.Bivalve grazing can result in local food depletion,which may negatively influence bivalve growth. On alarger scale, it may induce a top-down control ofphytoplankton biomasss, and structural shifts inphytoplankton composition. In the case of harmfulalgal blooms, phytoplankton may negatively affectbivalve grazing rates.The processing of large amounts of particulate mattermay change nutrient cycling on the scale of estuaries,and can result in changes in the inorganic nutrientpool available for phytoplankton, through regenerationand reduced storage of nutrients in algal biomass.This can reduce nutrient limitation of thephytoplankton and stimulate algal growth rates.Observations from mesocosm studies suggest that apositive feedback from bivalve grazing onphytoplankton growth may also change the physiologicalstate of the algae and improve food quality. This revised version was published online in August 2006 with corrections to the Cover Date.