Induction by IL 1 and interferon-gamma: tissue distribution, biochemistry, and function of a natural adherence molecule (ICAM-1)

ICAM-1 is a cell surface glycoprotein originally defined by a monoclonal antibody (MAb) that inhibits phorbol ester-stimulated leukocyte aggregation. Staining of frozen sections and immunofluorescence flow cytometry showed intercellular adhesion molecule-1 (ICAM-1) is expressed on non-hematopoietic cells such as vascular endothelial cells, thymic epithelial cells, certain other epithelial cells, and fibroblasts, and on hematopoietic cells such as tissue macrophages, mitogen-stimulated T lymphocyte blasts, and germinal center dendritic cells in tonsils, lymph nodes, and Peyer's patches. ICAM-1 staining on vascular endothelial cells is most intense in T cell areas in lymph nodes and tonsils showing reactive hyperplasia. ICAM-1 is expressed in low amounts on peripheral blood leukocytes. Phorbol ester-stimulated differentiation of myelomonocytic cell lines greatly increases ICAM-1 expression. ICAM-1 expression on dermal fibroblasts is increased threefold to fivefold by either interleukin 1 (IL 1) or interferon-gamma at 10 U/ml over a period of 4 or 10 hr, respectively. The induction is dependent on protein and mRNA synthesis and is reversible. ICAM-1 displays Mr heterogeneity in different cell types with a Mr of 97,000 on fibroblasts, 114,000 on the myelomonocytic cell line U937, and 90,000 on the B lymphoblastoid cell JY. ICAM-1 biosynthesis involves a Mr approximately 73,000 intracellular precursor. The non-N-glycosylated form resulting from tunicamycin treatment has a Mr of 55,000. ICAM-1 isolated from phorbol myristic acetate (PMA) stimulated U937 and from fibroblasts yields an identical major product of Mr = 60,000 after chemical deglycosylation. ICAM-1 MAb interferes with the adhesion of phytohemagglutinin blasts, and the adhesion of the cell line SKW3 to human dermal fibroblast cell layers. Pretreatment of fibroblasts but not lymphocytes with ICAM-1 MAb, and of lymphocytes but not fibroblasts with lymphocyte function-associated antigen 1 MAb inhibits adhesion. Intercellular adhesion is increased by prior exposure of fibroblasts to IL 1, and correlates with induction of ICAM-1.     

Cyanobacterial biofertilizers in rice agriculture

Floodwater and the surface of soil provide the sites for aerobic phototrophic nitrogen (N) fixation by free-living cyanobacteria and theAzolla-Anabaena symbiotic N₂-fixing complex. Free-living cyanobacteria, the majority of which are heterocystous and nitrogen fixing, contribute an average of 20–30 kg N ha^-1, whereas the value is up to 600 kg ha^-1 for theAzollaAnabaena system (the most beneficial cyanobacterial symbiosis from an agronomic point of view). Synthesis and excretion of organic/growth-promoting substances by the cyanobacteria are also on record. During the last two or three decades a large number of studies have been published on the various important fundamental and applied aspects of both kinds of cyanobacterial biofertilizers (the free-living cyanobacteria and the cyanobacteriumAnabaena azollae in symbiotic association with the water fernAzolla), which include strain identification, isolation, purification, and culture; laboratory analyses of their N₂-fixing activity and related physiology, biochemistry, and energetics; and identification of the structure and regulation of nitrogenfixing (nif) genes and nitrogenase enzyme. The symbiotic biology of theAzolla-Anabaena mutualistic N₂-fixing complex has been clarified. In free-living cyanobacterial strains, improvement through mutagenesis with respect to constitutive N₂ fixation and resistance to the noncongenial agronomic factors has been achieved. By preliminary meristem mutagenesis inAzolla, reduced phosphate dependence was achieved, as were temperature tolerance and significant sporulation/spore germination under controlled conditions. Mass-production biofertilizer technology of free-living and symbiotic (Azolla-Anabaena) cyanobacteria was studied, as were the interacting and agronomic effects of both kinds of cyanobacterial biofertilizer with rice, improving the economics of rice cultivation with the cyanobacterial biofertilizers. Recent results indicate a strong potential for cyanobacterial biofertilizer technology in rice-growing countries, which opens up a vast area of more concerted basic, applied, and extension work in the future to make these self-renewable natural nitrogen resources even more promising at the field level in order to help reduce the requirement for inorganic N to the bare minimum, if not to zero.     

T-cell receptor ligation by peptide/MHC induces activation of a caspase in immature thymocytes: the molecular basis of negative selection.

T-cell receptors (TCRs) are created by a stochastic gene rearrangement process during thymocyte development, generating thymocytes bearing useful, as well as unwanted, specificities. Within the latter group, autoreactive thymocytes arise which are subsequently eliminated via a thymocyte-specific apoptotic mechanism, termed negative selection. The molecular basis of this deletion is unknown. Here, we show that TCR triggering by peptide/MHC ligands activates a caspase in double-positive (DP) CD4+ CD8+ thymocytes, resulting in their death. Inhibition of this enzymatic activity prevents antigen-induced death of DP thymocytes in fetal thymic organ culture (FTOC) from TCR transgenic mice as well as apoptosis induced by anti-CD3epsilon monoclonal antibody and corticosteroids in FTOC of normal C57BL/6 mice. Hence, a common caspase mediates immature thymocyte susceptibility to cell death.     

Prognostic Stratification of GBMs Using Combinatorial Assessment of IDH1 Mutation,MGMT Promoter Methylation,and TERT Mutation Status: Experience from a Tertiary Care Center in India

This study aims to establish the best and simplified panel of molecular markers for prognostic stratification of glioblastomas (GBMs). One hundred fourteen cases of GBMs were studied for IDH1, TP53, and TERT mutation by Sanger sequencing; EGFR and PDGFRA amplification by fluorescence in situ hybridization; NF1expression by quantitative real time polymerase chain reaction (qRT-PCR); and MGMT promoter methylation by methylation-specific PCR. IDH1 mutant cases had significantly longer progression-free survival (PFS) and overall survival (OS) as compared to IDH1 wild-type cases. Combinatorial assessment of MGMT and TERT emerged as independent prognostic markers, especially in the IDH1 wild-type GBMs. Thus, within the IDH1 wild-type group, cases with only MGMT methylation (group 1) had the best outcome (median PFS: 83.3 weeks; OS: not reached), whereas GBMs with only TERT mutation (group 3) had the worst outcome (PFS: 19.7 weeks; OS: 32.8 weeks). Cases with both or none of these alterations (group 2) had intermediate prognosis (PFS: 47.6 weeks; OS: 89.2 weeks). Majority of the IDH1 mutant GBMs belonged to group 1 (75%), whereas only 18.7% and 6.2% showed group 2 and 3 signatures, respectively. Interestingly, none of the other genetic alterations were significantly associated with survival in IDH1 mutant or wild-type GBMs.Based on above findings, we recommend assessment of three markers, viz., IDH1, MGMT, and TERT, for GBM prognostication in routine practice. We show for the first time that IDH1 wild-type GBMs which constitute majority of the GBMs can be effectively stratified into three distinct prognostic subgroups based on MGMT and TERT status, irrespective of other genetic alterations.     

Escherichia coli-specific T lymphocytes in experimental pyelonephritis

We have assessed the phenotype and specificity of infiltrating mononuclear cells in a model of unilateral ascending acute pyelonephritis induced in rats with nephritogenic Escherichia coli or Pseudomonas aeruginosa. Histologic examination showed a predominance of mononuclear cells in the interstitium at all periods examined (4, 8, 15, 21, and 25 days), although at 4 and 8 days neutrophils were also abundant. Most of the mononuclear cells had the morphologic appearance of large lymphocytes. Immunoperoxidase studies with mAb showed that most of the mononuclear cells were W3/25+; many were W3/13+ and a small proportion were OX8+. Many of the mononuclear cells were Ia+. T cells were propagated in IL-2-containing media from small fragments of renal tissue with pyelonephritic lesions. Most of the propagated cells were W3/25+; fewer than (10%) were OX8+ or Ia+. T cells propagated from kidneys infected with E. coli responded, in proliferation assays, to the infecting strain or other E. coli strains, but not to P. aeruginosa or enterococci. The response to non-p-pilus-bearing E. coli was as great or greater than to E. coli with adhesins. T cells derived from lesions induced by P. aeruginosa responded to the infecting organisms, but not to E. coli. The response to the infecting organism (E. coli or P. aeruginosa) was MHC restricted, as indicated by the requirement for syngeneic APC. The results show that large numbers of T lymphocytes, especially with the "helper/inducer" phenotype, accumulate in the lesions of acute pyelonephritis in rats. Among the infiltrating T lymphocytes are activated cells and cells with specific reactivity to the infecting bacteria (or related strains). The findings indicate that T lymphocytes play a role within the kidney in response to the invading bacteria.     

Association of antecedent malnutrition with persistent diarrhoea: a case-control study.

To determine the effect of nutritional state on persistent diarrhoea a case-control study was carried out on 756 children followed up prospectively for 18 months. Children who developed persistent diarrhoea were compared with population controls and controls with acute diarrhoea. The mean weight for age in the children with persistent diarrhoea (69.9%) was significantly lower than that in the population controls (77.0%) and the diarrhoeal controls (76.2%). Weight for age of less than or equal to 70% was associated with persistent diarrhoea in both case-control analyses (population controls, matched odds ratio 3.25; diarrhoeal controls, matched odds ratio 2.46). The corrected odds (multiple logistic regression) in the two analyses were 3.2 (95% confidence interval 1.3 to 8.1) and 3.4 (1.2 to 9.1). Weight for age of less than or equal to 70% increases the risk of persistent diarrhoea. In an underweight child there is a higher risk of diarrhoea becoming persistent. Prevention of malnutrition and intensive management of acute diarrhoea in malnourished children should help reduce the risk of the diarrhoea persisting.     

Total syntheses and cytotoxicity of kealiiquinone, 2-deoxy-2-aminokealiiquinone and analogs

Concise syntheses of two Leucetta-derived naphthimidazole alkaloids, kealiiquinone and 2-deoxy-2-aminokealiiquinone, are described based on a biosynthetic-guided hypothesis. Advanced intermediates containing the full naphthimidazole framework are constructed through Friedel–Crafts chemistry followed by oxidation of the electron rich C-ring with hydrogen peroxide. The cytotoxicity of these alkaloids in a breast cancer cell line along with several closely related marine-derived natural products kealiinines A–C and analogs are reported.     

Endomembrane Trafficking Protein SEC24A Regulates Cell Size Patterning in Arabidopsis

Size is a critical property of a cell, but how it is determined is still not well understood. The sepal epidermis of Arabidopsis (Arabidopsis thaliana) contains cells with a diversity of sizes ranging from giant cells to small cells. Giant cells have undergone endoreduplication, a specialized cell cycle in which cells replicate their DNA but fail to divide, becoming polyploid and enlarged. Through forward genetics, we have identified a new mutant with ectopic giant cells covering the sepal epidermis. Surprisingly, the mutated gene, SEC24A, encodes a coat protein complex II vesicle coat subunit involved in endoplasmic reticulum-to-Golgi trafficking in the early secretory pathway. We show that the ectopic giant cells of sec24a-2 are highly endoreduplicated and that their formation requires the activity of giant cell pathway genes LOSS OF GIANT CELLS FROM ORGANS, DEFECTIVE KERNEL1, and Arabidopsis CRINKLY4. In contrast to other trafficking mutants, cytokinesis appears to occur normally in sec24a-2. Our study reveals an unexpected yet specific role of SEC24A in endoreduplication and cell size patterning in the Arabidopsis sepal.Size is a fundamental characteristic of a cell, but how cell size is determined is still not well understood in most living organisms (Marshall et al., 2012). Cells of different types typically have characteristic sizes, indicating that size is carefully regulated to fit cell functions during differentiation. At the simplest level, cell size is determined by growth and division. Although many factors regulating these two processes have been studied, how they are comprehensively regulated to achieve specific size outcomes remains unclear.The sepal of Arabidopsis (Arabidopsis thaliana) is an excellent model to study the regulation of cell size because it exhibits a characteristic pattern of giant cells interspersed in between small cells. The giant cells are large cells that span about one-fifth the length of the sepal (approximately 360 μm), while the smallest cells only reach to about 10 μm (Roeder et al., 2010). Previously, we have shown that variability in cell division times is sufficient to produce the cell size pattern (Roeder et al., 2010). The giant cells stop dividing and enter endoreduplication, a specialized cell cycle in which the cell replicates its DNA but skips mitosis to continue growing (Edgar and Orr-Weaver, 2001; Sugimoto-Shirasu and Roberts, 2003; Inzé and De Veylder, 2006; Breuer et al., 2010). Alongside the giant cells, the smaller cells continue dividing mitotically. Giant cells and small cells are different cell types, as they can be distinguished by the expression pattern of two independent enhancers. Furthermore, mutant screens have shown that genes involved in epidermal specification and cell cycle regulation are crucial for sepal cell size patterning. DEFECTIVE KERNEL1 (DEK1), Arabidopsis thaliana MERISTEM LAYER1 (ATML1), Arabidopsis CRINKLY4 (ACR4), and HOMEODOMAIN GLABROUS11 first establish the identity of giant cells, and then the cyclin dependent kinase inhibitor LOSS OF GIANT CELLS FROM ORGANS (LGO) influences the probability with which cells enter endoreduplication. Endoreduplication can further suppress the identity of small cells through an unknown mechanism (Roeder et al., 2010, 2012). The number of giant cells influences the curvature of the sepal, which is important for protecting the flower (Roeder et al., 2012). Therefore, cell size patterning ensures the protective role of sepals at the physiological level.The secretory pathway in eukaryotes is crucial for cells to maintain membrane homeostasis and protein localization. Proteins destined for the cell surface are first translated on the rough endoplasmic reticulum (ER) and then incorporated into coat protein complex II (COPII) vesicles that bud from ER membranes on the way to the Golgi apparatus. COPII machinery is highly conserved in eukaryotes, and each COPII component acts sequentially on the surface of the ER (Bickford et al., 2004; Marti et al., 2010; Zanetti et al., 2012). Vesicle coat assembly is initiated by SEC12, an ER membrane-anchored guanine nucleotide exchange factor (Barlowe and Schekman, 1993). SEC12 exchanges GDP with GTP on the small GTPase Secretion-associated RAS-related protein1 (SAR1), which increases the membrane affinity of SAR1. The ER membrane-bound SAR1 subsequently brings the SEC23/SEC24 subunits to form the prebudding complex, and eventually SEC13/SEC31 are recruited to increase rigidity of the COPII vesicle coat (Nakano and Muramatsu, 1989; Barlowe et al., 1994; Shaywitz et al., 1997; Aridor et al., 1998; Kuehn et al., 1998; Stagg et al., 2006; Copic et al., 2012). For COPII vesicles to fuse with the target membrane, superfamily N-ethylmaleimide-sensitive factor adaptor protein receptors (SNAREs) must be incorporated by SEC24 (Mossessova et al., 2003; Lipka et al., 2007; Mancias and Goldberg, 2008). In addition to its role in SNARE packaging, SEC24 also binds and loads secretory cargo proteins (Miller et al., 2003). Both the cargo and SNARE specificities are determined by the correspondence between the SEC24 isoform and the various ER export signals of cargoes and SNAREs (Barlowe., 2003; Miller et al., 2003; Mossessova et al., 2003; Mancias and Goldberg, 2008). The Arabidopsis genome encodes four SEC24 isoforms, SEC24A to SEC24D; how they differentially regulate trafficking is unknown (Bassham et al., 2008). Likewise, SEC24-cargo/SNARE interactions remain elusive in plants.Secretion defects in plants often lead to cell division defects due to the unique mechanisms of plants cytokinesis (Sylvester, 2000; Jürgens, 2005). In many eukaryotes other than plants, cytokinesis is accomplished by contraction of the cleavage furrow at the division plane. By contrast, cytokinesis in plants requires de novo secretion of vesicles to the division plane, after formation of the phragmoplast as the scaffold for delivery. Homotypic vesicle fusion sets up the early cell plate, which then expands laterally by fusing with other arriving vesicles (Balasubramanian et al., 2004; Jürgens, 2005; Reichardt et al., 2007). Hence, disruption of secretion in plants can often result in cytokinesis defects. For instance, a mutation in the SNARE KNOLLE leads to enlarged embryo cells with multiple nuclei (Lukowitz et al., 1996).Another common phenotype observed in secretion-deficient plants is abnormal auxin responses. The phytohormone auxin acts as a prominent signal in Arabidopsis development, and auxin influx/efflux carriers are essential in directing auxin transport and creating local maxima in an auxin gradient (Reinhardt et al., 2003; Heisler et al., 2005; Jönsson et al., 2006; Smith et al., 2006; Vanneste and Friml, 2009). To maintain appropriate auxin gradients, the subcellular localization of auxin carriers must be delicately regulated. Thus, auxin responses are highly sensitive to trafficking perturbations in plants (Geldner et al., 2003; Grunewald and Friml, 2010).Here, we have identified a new mutant with ectopic giant cells. Through positional cloning, we determined that the mutation occurs in the SEC24A gene, which encodes the cargo-binding subunit of the COPII vesicle complex. In addition to altered cell size, this unique sec24a-2 allele shows pleiotropic defects, including dwarfism, which have not been reported previously for other SEC24A alleles (Faso et al., 2009; Nakano et al., 2009; Conger et al., 2011). Although the mutant is developmentally aberrant, both cytokinesis and auxin response appear normal in sec24a-2, unlike other transport mutants. Instead, we find SEC24A regulates cell size specifically via the giant cell development pathway. Thus, our data reveal an unexpected role of SEC24A in endoreduplication and cell size patterning in the Arabidopsis sepal.     

Comparative morphological studies on spikes of Indian Selaginella Beauv.

The present study provides a comparative morphological analysis of spikes in different Indian species of Selaginella. The salient features of spikes including their types and also the shape and margin of sporophylls of the closely related taxa are characteristically useful in taxonomic delineation. We have used the term Leaf-flap, for the first time, and the Sporophyll-pteryx to denote the occurrence of vertical/oblique projection on the dorsal surface of leaf and sporophyll, respectively. The shape and colour of both mega- and micro-sporangia are also helpful in taxonomy; however, their size is not much significant as these are variable within the same spike of the species. A new pattern of sporangial distribution is being reported for the first time in the spike of S. plana (Desv. ex Poir.) Hieron.