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51.
Fecal glucocorticoid metabolites and assay validation: Stress response evaluation in captive brown howler monkeys (Alouatta clamitans) 下载免费PDF全文
52.
Cecília Dur?es Carla S. Moreira Inês Alvelos Adélia Mendes Liliana R. Santos José Carlos Machado Miguel Melo César Esteves Celestino Neves Manuel Sobrinho-Sim?es Paula Soares 《PloS one》2014,9(8)
Background
Autoimmune thyroid disease (AITD) comprises diseases including Hashimoto''s thyroiditis and Graves'' disease, both characterized by reactivity to autoantigens causing, respectively, inflammatory destruction and autoimmune stimulation of the thyroid-stimulating hormone receptor. AITD is the most common thyroid disease and the leading form of autoimmune disease in women. Cytokines are key regulators of the immune and inflammatory responses; therefore, genetic variants at cytokine-encoding genes are potential risk factors for AITD.Methods
Polymorphisms in the IL6-174 G/C (rs1800795), TNFA-308 G/A (rs1800629), IL1B-511 C/T (rs16944), and IFNGR1-56 T/C (rs2234711) genes were assessed in a case-control study comprising 420 Hashimoto''s thyroiditis patients, 111 Graves'' disease patients and 735 unrelated controls from Portugal. Genetic variants were discriminated by real-time PCR using TaqMan SNP genotyping assays.Results
A significant association was found between the allele A in TNFA-308 G/A and Hashimoto''s thyroiditis, both in the dominant (OR = 1.82, CI = 1.37–2.43, p-value = 4.4×10−5) and log-additive (OR = 1.64, CI = 1.28–2.10, p-value = 8.2×10−5) models. The allele C in IL6-174 G/C is also associated with Hashimoto''s thyroiditis, however, only retained significance after multiple testing correction in the log-additive model (OR = 1.28, CI = 1.06–1.54, p-value = 8.9×10−3). The group with Graves'' disease also registered a higher frequency of the allele A in TNFA-308 G/A compared with controls both in the dominant (OR = 1.85, CI = 1.19–2.87, p-value = 7.0×10−3) and log-additive (OR = 1.69, CI = 1.17–2.44, p-value = 6.6×10−3) models. The risk for Hashimoto''s thyroiditis and Graves'' disease increases with the number of risk alleles (OR for two risk alleles is, respectively, 2.27 and 2.59).Conclusions
This study reports significant associations of genetic variants in TNFA and IL6 with the risk for AITD, highlighting the relevance of polymorphisms in inflammation-related genes in the etiopathogenesis of AITD. 相似文献53.
Verónica C. Neves Kate Griffiths Fiona R. Savory Robert W. Furness Barbara K. Mable 《European Journal of Wildlife Research》2010,56(1):95-100
The European starling (Sturnus vulgaris) has recently been found to eat eggs of the endangered roseate tern (Sterna dougallii) in the Azores. Azorean starlings are considered an endemic subspecies (S. vulgaris granti), so we investigated how much genetic divergence has accumulated between the Azores and other European populations in order
to assess whether lethal control measures might be possible, as previous experiments have found that taste aversion is not
likely to be successful. For this purpose, we sequenced a region of the protein-coding mitochondrial gene ND2 for samples
from six different populations. Of the 1,026 base pairs sequenced, 19 (1.7%) were variable and formed 15 different haplotypes.
The Azores had high and significant genetic differentiation from all the other populations studied. Haplotype diversity was
high in the mainland populations studied, ranging from 0.767 to 0.900, but there was no variation among the Azores samples,
which were collected from a geographically broad region. Given the lack of genetic variability in the Azores birds and their
abundance throughout the archipelago, lethal control on a local basis and as part of an integrated control plan can be seen
as a reasonable measure to protect tern colonies. 相似文献
54.
Claudia T Guimaraes Christiano C Simoes Maria Marta Pastina Lyza G Maron Jurandir V Magalhaes Renato CC Vasconcellos Lauro JM Guimaraes Ubiraci GP Lana Carlos FS Tinoco Roberto W Noda Silvia N Jardim-Belicuas Leon V Kochian Vera MC Alves Sidney N Parentoni 《BMC genomics》2014,15(1)
Background
Aluminum (Al) toxicity is an important limitation to food security in tropical and subtropical regions. High Al saturation on acid soils limits root development, reducing water and nutrient uptake. In addition to naturally occurring acid soils, agricultural practices may decrease soil pH, leading to yield losses due to Al toxicity. Elucidating the genetic and molecular mechanisms underlying maize Al tolerance is expected to accelerate the development of Al-tolerant cultivars.Results
Five genomic regions were significantly associated with Al tolerance, using 54,455 SNP markers in a recombinant inbred line population derived from Cateto Al237. Candidate genes co-localized with Al tolerance QTLs were further investigated. Near-isogenic lines (NILs) developed for ZmMATE2 were as Al-sensitive as the recurrent line, indicating that this candidate gene was not responsible for the Al tolerance QTL on chromosome 5, qALT5. However, ZmNrat1, a maize homolog to OsNrat1, which encodes an Al3+ specific transporter previously implicated in rice Al tolerance, was mapped at ~40 Mbp from qALT5. We demonstrate for the first time that ZmNrat1 is preferentially expressed in maize root tips and is up-regulated by Al, similarly to OsNrat1 in rice, suggesting a role of this gene in maize Al tolerance. The strongest-effect QTL was mapped on chromosome 6 (qALT6), within a 0.5 Mbp region where three copies of the Al tolerance gene, ZmMATE1, were found in tandem configuration. qALT6 was shown to increase Al tolerance in maize; the qALT6-NILs carrying three copies of ZmMATE1 exhibited a two-fold increase in Al tolerance, and higher expression of ZmMATE1 compared to the Al sensitive recurrent parent. Interestingly, a new source of Al tolerance via ZmMATE1 was identified in a Brazilian elite line that showed high expression of ZmMATE1 but carries a single copy of ZmMATE1.Conclusions
High ZmMATE1 expression, controlled either by three copies of the target gene or by an unknown molecular mechanism, is responsible for Al tolerance mediated by qALT6. As Al tolerant alleles at qALT6 are rare in maize, marker-assisted introgression of this QTL is an important strategy to improve maize adaptation to acid soils worldwide.Electronic supplementary material
The online version of this article (doi:10.1186/1471-2164-15-153) contains supplementary material, which is available to authorized users. 相似文献55.
Gabriel Paiva Diogo Neves Proen?a Romeu Francisco Paula Verissimo Susana S. Santos Luís Fonseca Isabel M. O. Abrantes Paula V. Morais 《PloS one》2013,8(11)
Bacteria associated with the nematode Bursaphelenchus xylophilus, a pathogen of trees and the causal agent of pine wilt disease (PWD) may play a role in the disease. In order to evaluate their role (positive or negative to the tree), strains isolated from the track of nematodes from infected Pinus pinaster trees were screened, in vitro, for their nematicidal potential. The bacterial products, from strains more active in killing nematodes, were screened in order to identify and characterize the nematicidal agent. Forty-seven strains were tested and, of these, 21 strains showed capacity to produce extracellular products with nematicidal activity. All Burkholderia strains were non-toxic. In contrast, all Serratia strains except one exhibited high toxicity. Nematodes incubated with Serratia strains showed, by SEM observation, deposits of bacteria on the nematode cuticle. The most nematicidal strain, Serratia sp. A88copa13, produced proteases in the supernatant. The use of selective inhibitors revealed that a serine protease with 70 kDa was majorly responsible for the toxicity of the supernatant. This extracellular serine protease is different phylogenetically, in size and biochemically from previously described proteases. Nematicidal assays revealed differences in nematicidal activity of the proteases to different species of Bursaphelenchus, suggesting its usefulness in a primary screen of the nematodes. This study offers the basis for further investigation of PWD and brings new insights on the role bacteria play in the defense of pine trees against B. xylophilus. Understanding all the factors involved is important in order to develop strategies to control B. xylophilus dispersion. 相似文献
56.
Anders G. Sandström Henrik Almqvist Diogo Portugal-Nunes Dário Neves Gunnar Lidén Marie F. Gorwa-Grauslund 《Applied microbiology and biotechnology》2014,98(17):7299-7318
Carboxylic acids are important bulk chemicals that can be used as building blocks for the production of polymers, as acidulants, preservatives and flavour compound or as precursors for the synthesis of pharmaceuticals. Today, their production mainly takes place through catalytic processing of petroleum-based precursors. An appealing alternative would be to produce these compounds from renewable resources, using tailor-made microorganisms. Saccharomyces cerevisiae has already demonstrated its value for bioethanol production from renewable resources. In this review, we discuss Saccharomyces cerevisiae engineering potential, current strategies for carboxylic acid production as well as the specific challenges linked to the use of lignocellulosic biomass as carbon source. 相似文献
57.
Leandro Neves Faria Marlon Gomes Da Rocha Quirijn De Jong Van Lier Derblai Casaroli 《Plant and Soil》2010,331(1-2):299-311
Correct modeling of root water uptake partitioning over depth is an important issue in hydrological and crop growth models. Recently a physically based model to describe root water uptake was developed at single root scale and upscaled to the root system scale considering a homogeneous distribution of roots per soil layer. Root water uptake partitioning is calculated over soil layers or compartments as a function of respective soil hydraulic conditions, specifically the soil matric flux potential, root characteristics and a root system efficiency factor to compensate for within-layer root system heterogeneities. The performance of this model was tested in an experiment performed in two-compartment split-pot lysimeters with sorghum plants. The compartments were submitted to different irrigation cycles resulting in contrasting water contents over time. The root system efficiency factor was determined to be about 0.05. Release of water from roots to soil was predicted and observed on several occasions during the experiment; however, model predictions suggested root water release to occur more often and at a higher rate than observed. This may be due to not considering internal root system resistances, thus overestimating the ease with which roots can act as conductors of water. Excluding these erroneous predictions from the dataset, statistical indices show model performance to be of good quality. 相似文献
58.
59.
Habitat alteration and its effects on native fishes in the upper Tennessee River system, east-central U.S.A. 总被引:1,自引:0,他引:1
The upper Tennessee River drainage, which includes portions of the States of Virginia, North Carolina, and Tennessee, supports an exceptionally diverse fish fauna. Recent reductions in abundance and geographic ranges of several freshwater fishes have promulgated the imposition of protective measures for about 115 species among the three states, with nearly half of those species occurring in the upper Tennessee River. Most protected species are darters (Percidae: Etheostomatinae) or minnows (Cyprinidae), and are typically small, benthic invertivores. Major impacts on the fish fauna have resulted from dams, introduced species, toxic spills, mining and agriculture. An important cumulative effect of these impacts is fragmentation of the watershed; nearly 40% of the riverine habitat in major tributaries is either impounded or altered by tailwater discharges. The isolation and stress imposed on tributaries of the river have caused and will continue to cause extirpations of fishes, mussels and other aquatic fauna. Numerous federal, state, and private organizations are co-operating in efforts to protect rare species and habitats, improve agricultural and coal-producing practices, and enforce regulations for industrial and municipal effluents. 相似文献
60.
Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language 总被引:11,自引:4,他引:11 下载免费PDF全文
Rosser ZH Zerjal T Hurles ME Adojaan M Alavantic D Amorim A Amos W Armenteros M Arroyo E Barbujani G Beckman G Beckman L Bertranpetit J Bosch E Bradley DG Brede G Cooper G Côrte-Real HB de Knijff P Decorte R Dubrova YE Evgrafov O Gilissen A Glisic S Gölge M Hill EW Jeziorowska A Kalaydjieva L Kayser M Kivisild T Kravchenko SA Krumina A Kucinskas V Lavinha J Livshits LA Malaspina P Maria S McElreavey K Meitinger TA Mikelsaar AV Mitchell RJ Nafa K Nicholson J Nørby S Pandya A Parik J Patsalis PC 《American journal of human genetics》2000,67(6):1526-1543
Clinal patterns of autosomal genetic diversity within Europe have been interpreted in previous studies in terms of a Neolithic demic diffusion model for the spread of agriculture; in contrast, studies using mtDNA have traced many founding lineages to the Paleolithic and have not shown strongly clinal variation. We have used 11 human Y-chromosomal biallelic polymorphisms, defining 10 haplogroups, to analyze a sample of 3,616 Y chromosomes belonging to 47 European and circum-European populations. Patterns of geographic differentiation are highly nonrandom, and, when they are assessed using spatial autocorrelation analysis, they show significant clines for five of six haplogroups analyzed. Clines for two haplogroups, representing 45% of the chromosomes, are continentwide and consistent with the demic diffusion hypothesis. Clines for three other haplogroups each have different foci and are more regionally restricted and are likely to reflect distinct population movements, including one from north of the Black Sea. Principal-components analysis suggests that populations are related primarily on the basis of geography, rather than on the basis of linguistic affinity. This is confirmed in Mantel tests, which show a strong and highly significant partial correlation between genetics and geography but a low, nonsignificant partial correlation between genetics and language. Genetic-barrier analysis also indicates the primacy of geography in the shaping of patterns of variation. These patterns retain a strong signal of expansion from the Near East but also suggest that the demographic history of Europe has been complex and influenced by other major population movements, as well as by linguistic and geographic heterogeneities and the effects of drift. 相似文献