A geminivirus betasatellite encoded βC1 protein interacts with PsbP and subverts PsbP-mediated antiviral defence in plants

Geminivirus disease complexes potentially interfere with plants physiology and cause disastrous effects on a wide range of economically important crops throughout the world. Diverse geminivirus betasatellite associations exacerbate the epidemic threat for global food security. Our previous study showed that βC1, the pathogenicity determinant of geminivirus betasatellites induce symptom development by disrupting the ultrastructure and function of chloroplasts. Here we explored the betasatellite-virus-chloroplast interaction in the scope of viral pathogenesis as well as plant defence responses, using Nicotiana benthamiana—Radish leaf curl betasatellite (RaLCB) as the model system. We have shown an interaction between RaLCB-encoded βC1 and one of the extrinsic subunit proteins of oxygen-evolving complex of photosystem II both in vitro and in vivo. Further, we demonstrate a novel function of the Nicotiana benthamiana oxygen-evolving enhancer protein 2 (PsbP), in that it binds DNA, including geminivirus DNA. Transient silencing of PsbP in N. benthamiana plants enhances pathogenicity and viral DNA accumulation. Overexpression of PsbP impedes disease development during the early phase of infection, suggesting that PsbP is involved in generation of defence response during geminivirus infection. In addition, βC1-PsbP interaction hampers non-specific binding of PsbP to the geminivirus DNA. Our findings suggest that betasatellite-encoded βC1 protein accomplishes counter-defence by physical interaction with PsbP reducing the ability of PsbP to bind geminivirus DNA to establish infection.     

Incorporating Estimates of Group Size in Sightability Models for Wildlife

ABSTRACT Sightability models have been used to estimate population size of many wildlife species; however, a limitation of these models is an assumption that groups of animals observed and counted during aerial surveys are enumerated completely. Replacing these unknown counts with maximum observed counts, as is typically done, produces population size estimates that are negatively biased. This bias can be substantial depending on the degree of undercounting occurring. We first investigated a method-of-moments estimator of group sizes. We then defined a population size estimator using the method-of-moments estimator of group sizes in place of maximum counts in the traditional sightability models, thereby correcting for bias associated with undercounting group size. We also provide associated equations for calculating the variance of our estimator. This estimator is an improvement over existing sightability model techniques because it significantly reduces bias, and variance estimates provide near nominal confidence interval coverage. The data needed for this estimator can be easily collected and implemented by wildlife managers with a field crew of only 3 individuals and little additional flight or personnel time beyond the normal requirements for developing sightability models.     

Morphological and molecular evidence for phylogeny and classification of South American pitvipers,genera Bothrops,Bothriopsis, and Bothrocophias (Serpentes: Viperidae)

Species in the genus Bothrops s. l. are extraordinarily variable in ecology and geography, compared with other genera in the subfamily Crotalinae. In contrast to the trend of splitting large and variable groups into smaller, more ecologically and phenotypically cohesive genera, the genus Bothrops has remained speciose. In addition, previous phylogenetic analyses have found Bothrops to be paraphyletic with respect to the genus Bothriopsis. Taxonomic arguments exist for synonymizing Bothriopsis with Bothrops, and for splitting Bothrops into smaller genera, but the greatest hindrance to taxonomic revision has been incomplete phylogenetic information. We present a phylogeny of Bothrops, Bothriopsis, and Bothrocophias based on 85 characters of morphology and 2343 bp of four mitochondrial gene regions, and with significantly greater taxonomic coverage than previous studies. The combined data provide improved support over independent datasets, and support the existence of discrete species groups within Bothrops. The monophyly and distinctness of these groups warrant recognition at the generic level, and we propose a new taxonomic arrangement to reflect these findings. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 156 , 617–640.     

Coupling hydrocarbon degradation to anaerobic respiration and mineral diagenesis: theoretical constraints

The diagenetic mineral assemblages in petroleum reservoirs control the formation fluid pH and pCO₂. Anaerobic biodegradation of petroleum is controlled by the transfer of electrons from reduced organic species to inorganic, redox sensitive, aqueous and mineral species in many cases through intermediates such as H₂ and CH₃COO^?. The terminal electron accepting reactions induce the dissolution or precipitation of the same minerals that control the ambient pH and pCO₂ in petroleum reservoirs. In this study, we develop a model for anaerobic biodegradation of petroleum that couples the production of acetate and H₂ to ‘late stage’ diagenetic reactions. The model reveals that the principal terminal electron accepting process and electron donor control the type of diagenetic reaction, and that the petroleum biodegradation rate is controlled through thermodynamic restriction by the minimum ΔG required to support a specific microbial metabolism, the fluid flux and the mineral assemblage. These relationships are illustrated by modeling coupled microbial diagenesis and biodegradation of the Gullfaks oil reservoir. The results indicate that the complete dissolution of albite by acids generated during oil biodegradation and the corresponding elevated pCO₂ seen in the Gullfaks field are best explained by methanogenic respiration coupled to hydrocarbon degradation and that the biodegradation rate is likely controlled by the pCH₄. Biodegradation of Gullfaks oil by a consortium that includes either Fe³⁺‐reducing or ‐reducing bacteria cannot explain the observed diagenetic mineral assemblage or pCO₂. For octane, biodegradation, not water washing, was the principal agent for removal at fluid velocities <20 m Myr^?1.     

Is bigger better? Water balance in the polymorphic desert harvester ant Messor pergandei

Abstract. Foraging activity of ants in xeric areas may be limited by desiccation stresses. To assess the extent of such stresses on a polymorphic ant species [Messor pergandei (Mayr), body mass range 1-12mg], we measured body water reserves, absolute rates of water loss, and cuticular permeability over the species' foraging temperature range (15–45C). Cuticular permeability of M. pergandei was typical of xeric arthropods (17μgcm^-2h^-1mmHg^-1). However, the effect of polymorphism on both absolute and relative rates of water loss was unexpected. Large workers lost water more slowly than small workers, even after adjusting for cuticular surface area. In addition, the body water reserves of large workers were larger, even after adjusting for body mass. Small workers of this ant species are therefore disproportionately prone to dehydration, yet, in spite of this, constitute a large and important component of the foraging force. To assess the practical relevance of desiccation to polymorphic ants, we developed a 'worst-case' model of desiccation-limited foraging parameters (time to complete loss of locomotor coordination in 5% of the foraging force). In this model, average actual foraging duration was substantially less than would be required to incapacitate the ants by dehydration. We discuss direct and indirect evidence suggesting that desiccation may, nevertheless, impose limitations on the foraging activity of ants.     

Ecteinascidia turbinata Extract Activates Components of Inflammatory Responses Throughout the Phylogenetic Spectrum

The tunicate Ecteinascidia turbinata contains a substance orsubstances capable of exerting a number of biological effects.Extracts of tunicate tissues have been shown to kill tumorcells in vitro and arrest tumor growth in vivo. The extractsalso suppress allograft rejection, graft-US.-host reactionsand lymphocyte proliferative responses as well as humoral responsesto immunization. By modifying the conditions, the extracts couldpotentiate antibody responses. In addition, they augment functionsof monocyte-macrophages as evidenced by in vitro phagocytosis,in vivo clearance, and cytotoxic activity against target cells.After studies in mice, we were able to demonstrate that theextracts could activate the phagocytic systems of shrimp, bluecrab, and fish (the American eel). In fish, the intraperitonealroute was superior to the intravenous route for promotion ofphagocytosis, increase in percent presentation of granulocytesand for enhancement of resistance to bacterial infection. Intrarriuscularand intraperitoneal injection led to local inflammation withaccumulation of granulocytes and macrophages.     

Hypoxic Quiescence in Alligatorweed

Propagules (stem cuttings) of alligatorweed [Alternanthera philoxeroides (Mart.) Griseb.] were subjected to various treatments of submergence, emergence, light, dark, and oxygen to relate hypoxia to the suppression of alligatorweed growth by dark submergence. In the dark, submergence completely inhibited alligatorweed growth. A nitrogen atmosphere inhibited growth from emersed propagules in the dark. The suspension of growth by dark submergence was relieved by light (40 μ einsteins/m²× s photo-synthetically active radiation), emergence (whereby air is transported to underwater nodes via the aerenchyma), or exposure to 100 mg · l^-1 of hydrogen peroxide solution renewed at 48-h intervals. Suspension of growth by a nitrogen atmosphere was relieved by inclusion of 16% oxygen in the ambient atmosphere. Dark to light transfers showed that the suspension of growth was immediately relieved if the requisite conditions were restored; this phenomenon, as described, thus appears to be hypoxic quiescence. The suppression of growth of two other amphibious species, mild smartweed (Polygonum hydropiperoides Michx.) and creeping water-primrose (Jussiaea repens L. var. glabrescens Ktze.), by dark submergence suggests that hypoxic quiescence may be a factor in the life history of amphibious species other than alligatorweed.