Effect of amendments on phytoavailability and fractionation of copper and zinc in a contaminated soil

The ability of amendments to modify the soil properties and influence plants to immobilise Cu and Zn was studied in a naturally contaminated, additionally spiked podzolic soil. Lolium perenne L (perennial rye grass), Festuca rubra L (creeping red fescue) and Poa pratensis L (Kentucky blue grass) were tested in a pot study in the presence of soil amendments (lime, phosphate, and compost, individually and in combination) to assess the effect of soil-plant-amendment interaction on phytostabilisation. The ability of treatments to stabilize metals was assessed on the basis of metal fractionation in soil, partitioning of metals in plants, and metal uptake by the plants. Significant partitioning of Cu into immobile forms occurred as a result of the growth of Festuca rubra, and of Zn by the growth of Poa pratensis. Application of lime significantly reduced the exchangeable fraction of Zn, whereas phosphate application had an accelerating effect on exchangeable Cu. With combined application of amendments, the plant metal concentration decreased by more than 40% for Cu and 70% for Zn, compared to soils receiving no amendments. Combined application of amendments, in conjunction with growth of Festuca and Poa, can be recommended for phytostabilising of Cu and Zn in moderately contaminated acid soils of southwest British Columbia.     

Coherence Potentials: Loss-Less,All-or-None Network Events in the Cortex

Transient associations among neurons are thought to underlie memory and behavior. However, little is known about how such associations occur or how they can be identified. Here we recorded ongoing local field potential (LFP) activity at multiple sites within the cortex of awake monkeys and organotypic cultures of cortex. We show that when the composite activity of a local neuronal group exceeds a threshold, its activity pattern, as reflected in the LFP, occurs without distortion at other cortex sites via fast synaptic transmission. These large-amplitude LFPs, which we call coherence potentials, extend up to hundreds of milliseconds and mark periods of loss-less spread of temporal and amplitude information much like action potentials at the single-cell level. However, coherence potentials have an additional degree of freedom in the diversity of their waveforms, which provides a high-dimensional parameter for encoding information and allows identification of particular associations. Such nonlinear behavior is analogous to the spread of ideas and behaviors in social networks.     

Fas-associated death domain-containing protein-mediated antiviral innate immune signaling involves the regulation of Irf7

The induction of type I (alphabeta) IFN following virus infection is necessary for the stimulation of effective antiviral host defense. In fibroblasts, a subset of primary genes (including those encoding IFN-beta and IFN-alpha4) are induced directly by intracellular dsRNA generated by the virus during its replication. These primary type I IFNs induce expression of IFN regulatory factor (IRF)-7, required for production of a second cascade of IFN-alpha subtypes and the further establishment of a complete antiviral state. Previously, we had reported on a role for Fas-associated death domain-containing protein (FADD) in the control of TLR-independent innate immune responses to virus infection. Our data in this study demonstrate that FADD is not only required for efficient primary gene induction, but is also essential for induction of Irf7 and effective expression of secondary IFN-alphas and other antiviral genes. Ectopic overexpression of IRF-7 partially rescued dsRNA responsiveness and IFN-alpha production, and a constitutively active variant of IRF-7 displayed normal activity in Fadd(-/-) murine embryonic fibroblasts. MC159, a FADD-interacting viral protein encoded by the molluscum contagiosum poxvirus was found to inhibit dsRNA-activated signaling events upstream of IRF-7. These data indicate that FADD's antiviral activity involves regulation of IRF-7-dependent production of IFN-alpha subtypes and consequent induction of secondary antiviral genes.     

Compensatory effects of elevated CO<Subscript>2</Subscript> concentration on the inhibitory effects of high temperature and irradiance on photosynthetic gas exchange in carrots

We determined the interactive effects of irradiance, elevated CO₂ concentration (EC), and temperature in carrot (Daucus carota var. sativus). Plants of the cv. Red Core Chantenay (RCC) were grown in a controlled environmental plant growth room and exposed to 3 levels of photosynthetically active radiation (PAR) (400, 800, 1 200 μmol m⁻² s⁻¹), 3 leaf chamber temperatures (15, 20, 30 °C), and 2 external CO₂ concentrations (C _a), AC and EC (350 and 750 μmol mol⁻¹, respectively). Rates of net photosynthesis (P _N) and transpiration (E) and stomatal conductance (g _s ) were measured, along with water use efficiency (WUE) and ratio of internal and external CO₂ concentrations (C _i/C _a). P _N revealed an interactive effect between PAR and C _a. As PAR increased so did P _N under both C _a regimes. The g _s showed no interactive effects between the three parameters but had singular effects of temperature and PAR. E was strongly influenced by the combination of PAR and temperature. WUE was interactively affected by all three parameters. Maximum WUE occurred at 15 °C and 1 200 μmol m⁻² s^{− 1} PAR under EC. The C _i /C _a was influenced independently by temperature and C _a. Hence photosynthetic responses are interactively affected by changes in irradiance, external CO₂ concentration, and temperature. EC significantly compensates the inhibitory effects of high temperature and irradiance on P _N and WUE.     

Intrinsic changes in photosynthetic parameters of carrot leaves under increasing CO<Subscript>2</Subscript> concentrations and soil moisture regimes

A controlled growth chamber experiment was conducted to investigate the short-term water use and photosynthetic responses of 30-d-old carrot seedlings to the combined effects of CO₂ concentration (50–1 050 μmol mol⁻¹) and moisture deficits (−5, −30, −55, and −70 kPa). The photosynthetic response data was fitted to a non-rectangular hyperbola model. The estimated parameters were compared for effects of moisture deficit and elevated CO₂ concentration (EC). The carboxylation efficiency (α) increased in response to mild moisture stress (−30 kPa) under EC when compared to the unstressed control. However, moderate (−55 kPa) and extreme (−70 kPa) moisture deficits reduced α under EC. Maximum net photosynthetic rate (P _Nmax) did not differ between mild water deficit and unstressed controls under EC. Moderate and extreme moisture deficits reduced P _Nmax by nearly 85 % compared to controls. Dark respiration rate (R _D) showed no consistent response to moisture deficit. The CO₂ compensation concentration (Γ) was 324 μmol mol⁻¹ for −75 kPa and ranged 63–93 μmol mol⁻¹ for other moisture regimes. Interaction between moisture deficit and EC was noticed for P _N, ratio of intercellular and ambient CO₂ concentration (C _i/C _a), stomatal conductance (g _s ), and transpiration rate (E). P _N was maximum and C _i/C _a was minimum at −30 kPa moisture deficit and at C _a of 350 μmol mol⁻¹. The g _s and E showed an inverse relationship at all moisture deficit regimes and EC. Water use efficiency (WUE) increased with moisture deficit up to −55 kPa and declined thereafter. EC showed a positive influence towards sustaining P _N and increasing WUE only under mild moisture stress, and no beneficial effects of EC were noticed at moderate or extreme moisture deficits.     

Evaluation of antitumor effects of VEGFR-2 inhibitor F16 in a colorectal xenograft model

Biotechnology Letters - Colorectal cancer&nbsp;(CRC) is the third most prevalent type of cancer in the United States. The treatment options for cancer include surgery, chemotherapy, radiation,...     

Concerted and differential actions of two enzymatic domains underlie Rad5 contributions to DNA damage tolerance

Many genome maintenance factors have multiple enzymatic activities. In most cases, how their distinct activities functionally relate with each other is unclear. Here we examined the conserved budding yeast Rad5 protein that has both ubiquitin ligase and DNA helicase activities. The Rad5 ubiquitin ligase activity mediates PCNA poly-ubiquitination and subsequently recombination-based DNA lesion tolerance. Interestingly, the ligase domain is embedded in a larger helicase domain comprising seven consensus motifs. How features of the helicase domain influence ligase function is controversial. To clarify this issue, we use genetic, 2D gel and biochemical analyses and show that a Rad5 helicase motif important for ATP binding is also required for PCNA poly-ubiquitination and recombination-based lesion tolerance. We determine that this requirement is due to a previously unrecognized contribution of the motif to the PCNA and ubiquitination enzyme interaction, and not due to its canonical role in supporting helicase activity. We further show that Rad5′s helicase-mediated contribution to replication stress survival is separable from recombination. These findings delineate how two Rad5 enzymatic domains concertedly influence PCNA modification, and unveil their discrete contributions to stress tolerance.     

A novel binding assay identifies high affinity ligands to the rosiglitazone binding site of mitoNEET

A novel outer mitochondrial membrane protein containing [2Fe-2S] clusters, mitoNEET was first identified through its binding to the anti-diabetic drug pioglitazone. Pioglitazone belongs to a family of drugs that are peroxisome proliferator-activated receptor (PPAR) gamma agonists, collectively known as glitazones. With the lack of pharmacological tools available to fully elucidate mitoNEET's function, we developed a binding assay to probe the glitazone binding site with the aim of developing selective and high affinity compounds. We used multiple thiazolidine-2,4-dione (TZD), 2-thioxothiazolidin-4-one (TTD), and 2-iminothiazolidin-4-one (ITD) compounds to establish several trends to enhance ligand development for the purpose of elucidating mitoNEET function.