Strategies to restore floodplain vegetation after abandonment of human activities

Restoring the flooding‐related disturbance regime by removing and setting back flood defenses (channel widening) is the most efficient strategy for recovering riparian plant communities in floodplains formerly impacted by human activities such as agriculture, mining, and forestry. Removing flood defenses is generally not socially accepted, and alternative recovery strategies must be explored. We assessed vegetation establishment on 33 sites in the floodplains of the Middle Ebro River and three of its tributaries (NE Spain) where restoration approaches applied in the last 20 years include channel widening, floodplain excavation, and abandonment of agriculture, gravel extraction, and hybrid poplar plantations, with and without plantation of native species. Using analysis of similarity and ordinations, we found that channel widening led to plant communities closely resembling those found on natural gravel bars, including new recruits of keystone tree species. Excavation of the floodplain as the restoration approach resulted in pioneer, non‐strictly riparian communities. Abandonment of agricultural land or clearing of poplar plantations resulted in alternative stable states predominating, regardless of time elapsed since restoration and whether poles of native species were planted. However, forest‐like communities relatively similar to mature, natural riparian references were attainable when hybrid poplars were allowed to resprout after clear‐cutting, or after the human activities were abandoned and trees were not cut. Combining channel widening and assisted revegetation where flood defenses cannot be altered may partially reproduce a mosaic of habitats typical of natural floodplains.     

Small worms, big appetites: ratios of different functional morphs in relation to interspecific competition in trematode parasites

Animals living in colonies or collectives composed of highly-related individuals often produce morphs that are physically and behaviourally specialised to perform specific tasks. Because such morphs are often sterile, their production represents a fitness cost for the colony and there should be an optimal ratio of the numbers of sterile specialists and reproductive members that may be adjustable to environmental conditions. Trematode parasites undergo asexual multiplication within their snail intermediate host, resulting in large numbers of clonal stages known as rediae or sporocysts, depending on the trematode species. In areas with high prevalences of infection, the host can be infected by multiple species, which can lead to intense competition for limited resources. Here, we describe the existence of specialised ‘mini-rediae’ in the trematode Philophthalmus sp. that are morphologically and functionally specialised for interspecific competition. Mini-rediae were observed feeding on the sporocysts of a co-occurring trematode species - Maritrema novaezealandensis. In addition, in larger snails - which are less likely to have M. novaezealandensis infections - Philophthalmus sp. produces relatively fewer mini-rediae than expected. Our findings support results from a prior study which demonstrated the existence of morphs that perform specialised functions in antagonistic interspecific interactions in trematodes, and additionally shows that the number of these morphs in each host is associated with the likelihood of encountering other species within the same host. Trematodes may thus provide interesting models for studying morphological specialisation in colonial organisms.     

Intra-host competition between co-infecting digeneans within a bivalve second intermediate host: Dominance by priority-effect or taking advantage of others?

We experimentally investigated the interactions between two parasites known to manipulate their host's phenotype, the trematodes Acanthoparyphium sp. and Curtuteria australis, which infect the cockle Austrovenus stutchburyi. The larval stages of both species encyst within the tissue of the bivalve's muscular foot, with a preference for the tip of the foot. As more individuals accumulate at that site, they impair the burrowing behaviour of cockles and increase the probability of the parasites' transmission to a bird definitive host. However, individuals at the foot tip are also vulnerable to non-host predators in the form of foot-cropping fish which selectively bite off the foot tip of exposed cockles. Parasites encysted at the foot base are safe from such predators although they do not contribute to altering host behaviour, but nevertheless benefit from host manipulation as all parasites within the cockle are transmitted if it is ingested by a bird. Experimental infection revealed that Acanthoparyphium sp. and C. australis have different encystment patterns within the host, with proportionally fewer Acanthoparyphium metacercariae encysting at the foot tip than C. australis. This indicates that Acanthoparyphium may benefit indirectly from C. australis and incur a lower risk of non-host predation. However, in co-infections, not only did C. australis have higher infectivity than Acanthoparyphium, it also severely affected the latter's infection success. The asymmetrical strategies and interactions between the two species suggest that the advantages obtained from exploiting the host manipulation efforts of another parasite might be offset by traits such as reduced competitiveness in co-infections.     

Parasitized snails take the heat: a case of host manipulation?

Infection-induced changes in a host’s thermal physiology can represent (1) a generalized host response to infection, (2) a pathological side-effect of infection, or (3), provided the parasite’s development is temperature-dependent, a subtle case of host manipulation. This study investigates parasite-induced changes in the thermal biology of a first intermediate host infected by two castrating trematodes (genera Maritrema and Philophthalmus) using laboratory experiments and field surveys. The heat tolerance and temperatures selected by the snail, Zeacumantus subcarinatus, displayed alterations upon infection that differed between the two trematodes. Upon heating, snails infected by Maritrema sustained activity for longer durations than uninfected snails, followed by a more rapid recovery, and selected higher temperatures in a thermal gradient. These snails were also relatively abundant in high shore localities in the summer only, corresponding with seasonal elevated microhabitat temperatures. By contrast, Philophthalmus-infected snails fell rapidly into a coma upon heating and did not display altered thermal preferences. The respective heat tolerance of each trematode corresponded with the thermal responses induced in the snail: Maritrema survived exposure to 40°C, while Philophthalmus was less heat tolerant. Although both trematodes infect the same tissues, Philophthalmus leads to a reduction in the host’s thermal tolerance, a response consistent with a pathological side effect. By contrast, Maritrema induces heat tolerance in the snail and withstood exposure to high heat. As the developmental rate and infectivity of Maritrema increase with temperature up to 25°C, one adaptive explanation for our findings is that Maritrema manipulates the snail’s thermal responses to exploit warm microhabitats.     

Trematode life cycles: short is sweet?

Complex life cycles are a hallmark of parasitic trematodes. In several trematode taxa, however, the life cycle is truncated: fewer hosts are used than in a typical three-host cycle, with fewer transmission events. Eliminating one host from the life cycle can be achieved in at least three different ways. Some trematodes show even more extreme forms of life cycle abbreviations, using only a mollusc to complete their cycle, with or without sexual reproduction. The occurrence of these phenomena among trematode families are reviewed here and show that life cycle truncation has evolved independently many times in the phylogeny of trematodes. The hypotheses proposed to account for life-cycle truncation, in addition to the factors preventing the adoption of shorter cycles by all trematodes are also discussed. The study of shorter life cycles offers an opportunity to understand the forces shaping the evolution of life cycles in general.     

What determines species richness of parasitic organisms? A meta‐analysis across animal,plant and fungal hosts

Although a small set of external factors account for much of the spatial variation in plant and animal diversity, the search continues for general drivers of variation in parasite species richness among host species. Qualitative reviews of existing evidence suggest idiosyncrasies and inconsistent predictive power for all proposed determinants of parasite richness. Here, we provide the first quantitative synthesis of the evidence using a meta‐analysis of 62 original studies testing the relationship between parasite richness across animal, plant and fungal hosts, and each of its four most widely used presumed predictors: host body size, host geographical range size, host population density, and latitude. We uncover three universal predictors of parasite richness across host species, namely host body size, geographical range size and population density, applicable regardless of the taxa considered and independently of most aspects of study design. A proper match in the primary studies between the focal predictor and both the spatial scale of study and the level at which parasite species richness was quantified (i.e. within host populations or tallied across a host species' entire range) also affected the magnitude of effect sizes. By contrast, except for a couple of indicative trends in subsets of the full dataset, there was no strong evidence for an effect of latitude on parasite species richness; where found, this effect ran counter to the general latitude gradient in diversity, with parasite species richness tending to be higher further from the equator. Finally, the meta‐analysis also revealed a negative relationship between the magnitude of effect sizes and the year of publication of original studies (i.e. a time‐lag bias). This temporal bias may be due to the increasing use of phylogenetic correction in comparative analyses of parasite richness over time, as this correction yields more conservative effect sizes. Overall, these findings point to common underlying processes of parasite diversification fundamentally different from those controlling the diversity of free‐living organisms.     

Phylogeography and population history of Leopardus guigna,the smallest American felid

The guigna (Leopardus guigna) is the smallest and most-restricted New World cat species, inhabiting only around 160,000 km² of temperate rain forests in southern South America and is currently threatened by habitat loss, fragmentation and human persecution. We investigated phylogeographic patterns of genetic diversity, demographic history and barriers to gene flow with 116 individuals sampled across the species geographic range by analyzing 1,798 base pairs of the mtDNA (496 bp HVSI region, 720 bp NADH-5 gene, 364 bp from 16S gene and 218 bp from ATP-8 gene) and 15 microsatellite loci. Mitochondrial DNA data revealed a clear phylogeographic pattern with moderate separation between northern and southern Chilean populations supporting recognized subspecific partitions based on morphology. A recent demographic expansion was inferred for the southern-most group (San Rafael Lake), presumably due to the complete coverage of this area during the last glacial period, 28000–16000 years BP. Geographical barriers such as the Andes Mountains and the Chacao Channel have partially restricted historic and more-recent gene flow and the Chiloé Island population has diverged genetically since being separated from the mainland 7000 years BP. This is the first study of the genetic structure of this threatened species throughout its whole geographic range.     

Predicting the Risk of Suicide by Analyzing the Text of Clinical Notes

We developed linguistics-driven prediction models to estimate the risk of suicide. These models were generated from unstructured clinical notes taken from a national sample of U.S. Veterans Administration (VA) medical records. We created three matched cohorts: veterans who committed suicide, veterans who used mental health services and did not commit suicide, and veterans who did not use mental health services and did not commit suicide during the observation period (n = 70 in each group). From the clinical notes, we generated datasets of single keywords and multi-word phrases, and constructed prediction models using a machine-learning algorithm based on a genetic programming framework. The resulting inference accuracy was consistently 65% or more. Our data therefore suggests that computerized text analytics can be applied to unstructured medical records to estimate the risk of suicide. The resulting system could allow clinicians to potentially screen seemingly healthy patients at the primary care level, and to continuously evaluate the suicide risk among psychiatric patients.