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21.
Angela CM Luyf Barbera DC van Schaik Michel de Vries Frank Baas Antoine HC van Kampen Silvia D Olabarriaga 《BMC bioinformatics》2010,11(1):598
Background
Bioinformatics is confronted with a new data explosion due to the availability of high throughput DNA sequencers. Data storage and analysis becomes a problem on local servers, and therefore it is needed to switch to other IT infrastructures. Grid and workflow technology can help to handle the data more efficiently, as well as facilitate collaborations. However, interfaces to grids are often unfriendly to novice users. 相似文献22.
Steven A. Pothoven Tomas O. Höök Thomas F. Nalepa Michael V. Thomas Julianne Dyble 《Aquatic Ecology》2013,47(1):1-12
We evaluated the response of the zooplankton community Saginaw Bay, Lake Huron to the disappearance of the planktivore alewife Alosa pseudoharengus using data collected in 1991–1996 (pre alewife decline) and 2009–2010 (post alewife decline). Bosmina longirostris, Diaptomidae, Cyclops, and Daphnia galeata contributed greatly to the separation of the two time periods with Diaptomidae and D. galeata increasing and Cyclops and B. longirostris decreasing, although B. longirostris remained the dominant species. Peak densities of zooplankton occurred in early summer (June) in the 1990s and in early fall (October) in 2009–2010. For the analysis of environmental variables on a bay-wide, annual basis, abundance of alewife, age-0 yellow perch Perca flavescens and Bythotrephes captured much of the variation in annual zooplankton community structure. Abundances of Bythotrephes and age-0 yellow perch were both higher in 2009–2010 than in 1991–1996. Some changes such as increasing proportions of calanoid copepods reflect a more oligotrophic community and are potentially indicative of resource-driven changes rather than direct or indirect impacts of the alewife disappearance. 相似文献
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Xiaocui Zhu Leah A Santat Mi Sook Chang Jamie Liu Joelle R Zavzavadjian Estelle A Wall Christine Kivork Melvin I Simon Iain DC Fraser 《BMC molecular biology》2007,8(1):98
Background
Effective and stable knockdown of multiple gene targets by RNA interference is often necessary to overcome isoform redundancy, but it remains a technical challenge when working with intractable cell systems. 相似文献25.
The abundance, biomass, and life history traits of Mysis relicta were evaluated in the spring, summer, and autumn of 2000 at 8 nearshore (45 m) and 8 offshore (75–110 m) stations throughout central and southern Lake Michigan. Abundance was also evaluated on a smaller scale during June 2000 at 4 nearshore and 4 offshore stations in southeastern Lake Michigan. For large-scale sampling, the abundance of M. relicta did not differ among locations in the spring. In the summer and autumn the abundance of M. relicta was similar among offshore stations with the exception of one station each season; for nearshore stations, abundance was generally highest off Pentwater, Michigan. The abundance of mysids was not consistently high for central or southern basin sites, although overall biomass was higher in the southern basin each season. Abundance of Mysis was positively correlated with bottom depth, but not with bottom water temperature, surface water temperature, or mean chlorophyll concentration. Within the smaller region in southeast Lake Michigan, the abundance of M. relicta differed among locations for both nearshore and offshore stations. Brood size and size of reproductive females did not differ among lake wide locations, but the proportion of females with broods and the size distribution of M. relicta did. 相似文献
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Lúcia de Paula Célio L Silva Daniela Carlos Camila Matias-Peres Carlos A Sorgi Edson G Soares Patrícia RM Souza Carlos RZ Bladés Fábio CS Galleti Vânia LD Bonato Eduardo DC Gonçalves Érika VG Silva Lúcia H Faccioli 《Genetic vaccines and therapy》2007,5(1):1-7
The great challenges for researchers working in the field of vaccinology are optimizing DNA vaccines for use in humans or large animals and creating effective single-dose vaccines using appropriated controlled delivery systems. Plasmid DNA encoding the heat-shock protein 65 (hsp65) (DNAhsp65) has been shown to induce protective and therapeutic immune responses in a murine model of tuberculosis (TB). Despite the success of naked DNAhsp65-based vaccine to protect mice against TB, it requires multiple doses of high amounts of DNA for effective immunization. In order to optimize this DNA vaccine and simplify the vaccination schedule, we coencapsulated DNAhsp65 and the adjuvant trehalose dimycolate (TDM) into biodegradable poly (DL-lactide-co-glycolide) (PLGA) microspheres for a single dose administration. Moreover, a single-shot prime-boost vaccine formulation based on a mixture of two different PLGA microspheres, presenting faster and slower release of, respectively, DNAhsp65 and the recombinant hsp65 protein was also developed. These formulations were tested in mice as well as in guinea pigs by comparison with the efficacy and toxicity induced by the naked DNA preparation or BCG. The single-shot prime-boost formulation clearly presented good efficacy and diminished lung pathology in both mice and guinea pigs. 相似文献
27.
Andrew D Morgan Michael A Brockhurst Laura DC Lopez-Pascua Csaba Pal Angus Buckling 《BMC evolutionary biology》2007,7(1):1
Background
The dynamics of antagonistic host-parasite coevolution are believed to be crucially dependent on the rate of migration between populations. We addressed how the rate of simultaneous migration of host and parasite affected resistance and infectivity evolution of coevolving meta-populations of the bacterium Pseudomonas fluorescens and a viral parasite (bacteriophage). The increase in genetic variation resulting from small amounts of migration is expected to increase rates of adaptation of both host and parasite. However, previous studies suggest phages should benefit more from migration than bacteria; because in the absence of migration, phages are more genetically limited and have a lower evolutionary potential compared to the bacteria. 相似文献28.
Concentric electrodes have been fabricated from 304 stainless steel in which a small anode (0.031 cm2) and large cathode (4.87 cm2) are induced by the application of a current density of 11A cm–2 at the anode. It has previously been shown that reproducible pitting and maintenance of a galvanic current occurs only in the presence of a consortium of bacteria containing sulphate-reducing bacteria (SRB). Actively corroding systems that had maintained a galvanic current for at least 24 h after the applied current was removed were treated with inhibitors of the SRB. The only inhibitor tested which had any marked effect on the galvanic current was sodium molybdate which is a known inhibitor of corrosion as well as SRB. 相似文献
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Background
Globalization and subsequent growth in international trade in animals and animal products has increased the importance of international disease reporting. Efficient and reliable surveillance systems are needed in order to document the disease status of a population at a given time. In this context, passive surveillance plays an important role in early warning systems. However, it is not yet routinely integrated in the assessment of disease surveillance systems because different factors like the disease awareness (DA) of people reporting suspect cases influence the detection performance of passive surveillance. In this paper, we used scenario tree methodology in order to evaluate and compare the quality and benefit of abortion testing (ABT) for Brucella melitensis (Bm) between the disease free situation in Switzerland (CH) and a hypothetical disease free situation in Bosnia and Herzegovina (BH), taking into account DA levels assumed for the current endemic situation in BH.Results
The structure and input parameters of the scenario tree were identical for CH and BH with the exception of population data in small ruminants and the DA in farmers and veterinarians. The sensitivity analysis of the stochastic scenario tree model showed that the small ruminant population structure and the DA of farmers were important influential parameters with regard to the unit sensitivity of ABT in both CH and BH. The DA of both farmers and veterinarians was assumed to be higher in BH than in CH due to the current endemic situation in BH. Although the same DA cannot necessarily be assumed for the modelled hypothetical disease free situation as for the actual endemic situation, it shows the importance of the higher vigilance of people reporting suspect cases on the probability that an average unit processed in the ABT-component would test positive.Conclusion
The actual sensitivity of passive surveillance approaches heavily depends on the context in which they are applied. Scenario tree modelling allows for the evaluation of such passive surveillance system components under assumed disease free situation. Despite data gaps, this is a real opportunity to compare different situations and to explore consequences of changes that could be made.30.
Ornella J Rullo Jennifer MP Woo Miriam F Parsa Alice DC Hoftman Paul Maranian David A Elashoff Timothy B Niewold Jennifer M Grossman Bevra H Hahn Maureen McMahon Deborah K McCurdy Betty P Tsao 《Arthritis research & therapy》2013,15(1):R18