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91.
The aerobic nitrogen fixing xylanolytic bacterium Paenibacillus pabuli strain ATSKP produces loosely attached capsular polysaccharide KP-EPS. On 0.5% birchwood xylan 70 ± 5.02 mg of KP-EPS was
produced per gram dry weight of cells by the fourth day of growth in the absence of combined nitrogen source at 30°C. It was
separated and purified using centrifugation, cold acetone precipitation and dialysis and is a sulfate containing heteropolymer
as revealed by FT-IR spectrometry and elemental analysis. CHN analysis revealed the presence of 37.50% carbon, 5.90% hydrogen
and 8.28% nitrogen in KP-EPS. Absence of phosphorus was confirmed by 31P NMR. ICP-OES analysis showed the presence of various metals in small concentrations. Specific binding with aniline blue
suggested the presence of (1,3)-β-d-glucan. Thermal gravimetric analysis and differential scanning calorimetric analysis confirmed its thermal stability as high
as 200°C. The EPS was not pseudo plastic and the viscosity was less than xanthan. The intrinsic viscosity did not reduce drastically
when dissolved in 0.1 M NaCl. 相似文献
92.
Traditional concealed information paradigms rely on the idea that stimuli that are meaningful to a person (critical items)
will draw attentional resources disproportionately, relative to stimuli that are not (irrelevant items), generating detectable
differences on a suitable dependent variable (behavioral, psychophysiological, or neural). Here, we introduce a behavioral
paradigm that could be used to reveal concealed information by exploiting the link between concealed information and attentional
processes more directly. This novel paradigm is based on the attentional blink phenomenon in which detection of a stimulus
reduces detection accuracy rates of subsequent target stimuli within a 200–500 ms time window. We hypothesized that a well-known
face used as a critical item could capture attentional resources automatically, making it harder to detect the occurrence
of a subsequently presented target face. The results confirmed this hypothesis, and showed that concealed knowledge of a famous
face could be detected in 9 out of 12 individuals by looking for a relative dip in target detection accuracy after the presentation
of a critical item. 相似文献
93.
Jason J. Paxman Natalie A. Borg James Horne Philip E. Thompson Yanni Chin Pooja Sharma Jamie S. Simpson Jerome Wielens Susannah Piek Charlene M. Kahler Harry Sakellaris Mary Pearce Stephen P. Bottomley Jamie Rossjohn Martin J. Scanlon 《The Journal of biological chemistry》2009,284(26):17835-17845
Oxidative protein folding in Gram-negative bacteria results in the formation of disulfide bonds between pairs of cysteine residues. This is a multistep process in which the dithiol-disulfide oxidoreductase enzyme, DsbA, plays a central role. The structure of DsbA comprises an all helical domain of unknown function and a thioredoxin domain, where active site cysteines shuttle between an oxidized, substrate-bound, reduced form and a DsbB-bound form, where DsbB is a membrane protein that reoxidizes DsbA. Most DsbA enzymes interact with a wide variety of reduced substrates and show little specificity. However, a number of DsbA enzymes have now been identified that have narrow substrate repertoires and appear to interact specifically with a smaller number of substrates. The transient nature of the DsbA-substrate complex has hampered our understanding of the factors that govern the interaction of DsbA enzymes with their substrates. Here we report the crystal structure of a complex between Escherichia coli DsbA and a peptide with a sequence derived from a substrate. The binding site identified in the DsbA-peptide complex was distinct from that observed for DsbB in the DsbA-DsbB complex. The structure revealed details of the DsbA-peptide interaction and suggested a mechanism by which DsbA can simultaneously show broad specificity for substrates yet exhibit specificity for DsbB. This mode of binding was supported by solution nuclear magnetic resonance data as well as functional data, which demonstrated that the substrate specificity of DsbA could be modified via changes at the binding interface identified in the structure of the complex. 相似文献
94.
Pungaliya PP Bai Y Lipinski K Anand VS Sen S Brown EL Bates B Reinhart PH West AB Hirst WD Braithwaite SP 《PloS one》2010,5(10):e13672
Mutations in LRRK2 (leucine-rich repeat kinase 2) have been identified as major genetic determinants of Parkinson's disease (PD). The most prevalent mutation, G2019S, increases LRRK2's kinase activity, therefore understanding the sites and substrates that LRRK2 phosphorylates is critical to understanding its role in disease aetiology. Since the physiological substrates of this kinase are unknown, we set out to reveal potential targets of LRRK2 G2019S by identifying its favored phosphorylation motif. A non-biased screen of an oriented peptide library elucidated F/Y-x-T-x-R/K as the core dependent substrate sequence. Bioinformatic analysis of the consensus phosphorylation motif identified several novel candidate substrates that potentially function in neuronal pathophysiology. Peptides corresponding to the most PD relevant proteins were efficiently phosphorylated by LRRK2 in vitro. Interestingly, the phosphomotif was also identified within LRRK2 itself. Autophosphorylation was detected by mass spectrometry and biochemical means at the only F-x-T-x-R site (Thr 1410) within LRRK2. The relevance of this site was assessed by measuring effects of mutations on autophosphorylation, kinase activity, GTP binding, GTP hydrolysis, and LRRK2 multimerization. These studies indicate that modification of Thr1410 subtly regulates GTP hydrolysis by LRRK2, but with minimal effects on other parameters measured. Together the identification of LRRK2's phosphorylation consensus motif, and the functional consequences of its phosphorylation, provide insights into downstream LRRK2-signaling pathways. 相似文献
95.
Rui Yin Johnathan D. Guest Ghazaleh Taherzadeh Ragul Gowthaman Ipsa Mittra Jane Quackenbush Brian G. Pierce 《PLoS computational biology》2021,17(9)
The SARS-CoV-2 pandemic highlights the need for a detailed molecular understanding of protective antibody responses. This is underscored by the emergence and spread of SARS-CoV-2 variants, including Alpha (B.1.1.7) and Delta (B.1.617.2), some of which appear to be less effectively targeted by current monoclonal antibodies and vaccines. Here we report a high resolution and comprehensive map of antibody recognition of the SARS-CoV-2 spike receptor binding domain (RBD), which is the target of most neutralizing antibodies, using computational structural analysis. With a dataset of nonredundant experimentally determined antibody-RBD structures, we classified antibodies by RBD residue binding determinants using unsupervised clustering. We also identified the energetic and conservation features of epitope residues and assessed the capacity of viral variant mutations to disrupt antibody recognition, revealing sets of antibodies predicted to effectively target recently described viral variants. This detailed structure-based reference of antibody RBD recognition signatures can inform therapeutic and vaccine design strategies. 相似文献
96.
Himalayan soils undergo dramatic temporal changes in their microclimatic properties. The soil habitats in the high altitude
cold habitats of Himalayas are little explored with respect to bacterial diversity and metabolic potentials of the bacterial
species. Soil habitat in Western Himalayas is dominated by the genera of Pseudomonas, Arthrobacter, Bacillus, and Flavobacterium. Strains were found to be diverse in their metabolic potentials to utilize different carbon sources by growing them on media
containing 114 different sole carbon sources. Bacillus sp. STL9 was supported by the lowest number (12.3%) of the carbon sources while growth was observed in 73.7% of the carbon
sources tested for the Pseudomonas sp. SPS2. Carbohydrates appeared to be preferred carbon sources for these Himalayan isolates followed by amino acids and
proteins. These microbes also produced various extra-cellular hydrolytic enzymes having biotechnological potentials, lipase
being the one secreted by most strains (85.7%) followed by β-galactosidase (42.8%). Antibiotic resistance profiling for 85
different antibiotics has also been described. 相似文献
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The genus Psorotheciopsis Rehm recorded by Cunningham from Calcutta in 1879 has been rediscovered for India after a gap of 135 years. The taxonomic characters of Psorotheciopsis patellarioides (Rehm) Rolf Santesson are provided to facilitate the identification of the species. (© 2013 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim) 相似文献