Riodocea (Rubiaceae, Gardenieae), a new genus from the Brazilian Atlantic forest

The genusRiodocea is here described from material collected in the várzea forest of the Rio Doce Valley, northern Espírito Santo.Riodocea is a monotypic genus probably related to the Amazonian endemicKutchubaea. A line drawing shows general morphology and photomicrographs show pollen morphology ofRiodocea pulcherrima. Distribution maps ofRiodocea andKutchubaea are included. The valley of the Rio Doce is here included in the Bahian Hylaea, defined as a subregion of the Brazilian Atlantic forest. The connections between the Amazonian Hylaea and the Bahian Hylaea are discussed.     

Oncogene alterations in primary,recurrent, and metastatic human bone tumors

We investigated the structure and the expression of various oncogenes in three of the most common human bone tumors—osteosarcoma (36 samples from 34 patients), giant cell tumor (10 patients), and chondrosarcoma (18 patients)—in an attempt to identify the genetic alterations associated with these malignancies. Alterations of RB and p53 were detected only in osteosarcomas. Alterations of c-myc, N-myc, and c-fos were detected in osteosarcomas and giant cell tumors. Ras alterations (H-ras, Ki-ras, N-ras) were rare. Chondrosarcomas did not contain any detectable genetic alterations. Our results suggest that alterations of c-myc, N-myc, and c-fos oncogenes occur in osteosarcomas, in addition to those previously described for the tumor suppressor genes RB and p53. Moreover, statistical analyses indicate that c-fos alterations occur more frequently in osteosarcoma patients with recurrent or metastatic disease. © 1996 Wiley-Liss, Inc.     

Mediterranean sea cliff plants: morphological and physiological responses to environmental conditions

Aims The plants of Mediterranean sea cliff ecosystems are resistant to several environmental challenges. In this study, six species typical of the coastal rocky cliffs have been analyzed in order to evaluate their diverse morphological and physiological responses to their environment across the seasons, and to examine the strategy of the ecological group to which each species belongs. Since these species are widespread across the Mediterranean region, our aim was also to highlight their ecophysiological features in habitats where the direct influence of the sea is stronger.Methods The selected species are characteristic of the sea cliffs of Elba island (Tyrrhenian sea, Italy): the halophyte Crithmum maritimum, the semideciduous Helichrysum italicum and Lavandula stoechas and the sclerophylls Myrtus communis, Quercus ilex and Rhamnus alaternus. Four morphological traits—canopy height, leaf area, specific leaf area and leaf dry matter content—and two physiological traits—leaf water potential (LWP) and photosynthetic efficiency (PE), measured before the dawn and at midday—were analyzed. Water potential was measured by a pressure chamber and photosynthetic efficiency was determined by the analysis of chlorophyll fluorescence. Plant performance was also evaluated by calculating chronic (PI chr) and dynamic photoinhibition (PI dyn).Important findings Crithmum maritimum showed high resistance to the recurrent dry periods, because of the high water storage capacity of its leaves and its PE declined markedly only in July, under the harshest climatic conditions. Semideciduous taxa utilize primarily an avoidance strategy, which aims at reducing the overall leaf surface, while sclerophylls mostly show a tolerance strategy towards the prevailing stressors, as demonstrated by LWP and PE, that are lower in the sclerophylls than in the semideciduous taxa during summer, due to osmoregulation and photoinhibition, respectively. Furthermore, variability of physiological parameters was higher in the sclerophylls than in the semideciduous taxa, because the former had to withstand wider oscillations of their LWP and PE. The sclerophyllous taxa underwent a slight loss of PE also in winter, likely owing to the combined action of low temperature and high irradiance. In Mediterranean sea cliff ecosystems, the stressful combination of high irradiance, high temperatures and low rainfall typical of the summer season may have been intensified by the shallow soil which displays a poor water storage capacity. On the other hand, winter stress, caused by high solar radiation and low temperatures, does not seem to seriously affect the performance of the studied species.     

Spatial dynamics and mixing of bluefin tuna in the Atlantic Ocean and Mediterranean Sea revealed using next‐generation sequencing

The Atlantic bluefin tuna is a highly migratory species emblematic of the challenges associated with shared fisheries management. In an effort to resolve the species’ stock dynamics, a genomewide search for spatially informative single nucleotide polymorphisms (SNPs) was undertaken, by way of sequencing reduced representation libraries. An allele frequency approach to SNP discovery was used, combining the data of 555 larvae and young‐of‐the‐year (LYOY) into pools representing major geographical areas and mapping against a newly assembled genomic reference. From a set of 184,895 candidate loci, 384 were selected for validation using 167 LYOY. A highly discriminatory genotyping panel of 95 SNPs was ultimately developed by selecting loci with the most pronounced differences between western Atlantic and Mediterranean Sea LYOY. The panel was evaluated by genotyping a different set of LYOY (n = 326), and from these, 77.8% and 82.1% were correctly assigned to western Atlantic and Mediterranean Sea origins, respectively. The panel revealed temporally persistent differentiation among LYOY from the western Atlantic and Mediterranean Sea (F_ST = 0.008, p = .034). The composition of six mixed feeding aggregations in the Atlantic Ocean and Mediterranean Sea was characterized using genotypes from medium (n = 184) and large (n = 48) adults, applying population assignment and mixture analyses. The results provide evidence of persistent population structuring across broad geographic areas and extensive mixing in the Atlantic Ocean, particularly in the mid‐Atlantic Bight and Gulf of St. Lawrence. The genomic reference and genotyping tools presented here constitute novel resources useful for future research and conservation efforts.     

Solution structure of a BolA-like protein from Mus musculus

The BolA-like proteins are widely conserved from prokaryotes to eukaryotes. The BolA-like proteins seem to be involved in cell proliferation or cell-cycle regulation, but the molecular function is still unknown. Here we determined the structure of a mouse BolA-like protein. The overall topology is alphabetabetaalphaalphabetaalpha, in which beta(1) and beta(2) are antiparallel, and beta(3) is parallel to beta(2). This fold is similar to the class II KH fold, except for the absence of the GXXG loop, which is well conserved in the KH fold. The conserved residues in the BolA-like proteins are assembled on the one side of the protein.     

Ligand induced P---H bond formation and a comparison of the reactivity of two isomers of the carbonyl hydride [Pt2(μ-PBu2)2(H)(CO)(PBu2H)]CF3SO3

The Pt₂ ^(II) isomeric terminal hydrides [(CO)(H)Pt(μ-PBu^t ₂)₂Pt(PBu^t ₂H)]CF₃SO₃ (1a), and [(CO)Pt(μ-PBu^t ₂)₂Pt(PBu^t ₂H)(H)]CF₃SO₃ (1b), react rapidly with 1 atm of carbon monoxide to give the same mixture of two isomers of the Pt₂ ^(I) dicarbonyl [Pt₂(μ-PBu^t ₂)(CO)₂(PBu^t ₂H)₂]CF₃SO₃ (3-Pt); the solid state structure of the isomer bearing the carbonyl ligands pseudo-trans to the bridging phosphide was solved by X-ray diffraction. A remarkable difference was instead found between the reactivity of 1a and 1b towards carbon disulfide or isoprene. In both cases 1b reacts slowly to afford [Pt₂(μ-PBu^t ₂)(μ,η²,η²-CS₂)(PBu^t ₂H)₂]CF₃SO₃ (4-Pt), and [Pt₂(μ-PBu^t ₂)(μ,η²,η²-isoprene) (PBu^t ₂H)₂]CF₃SO₃ (6-Pt), respectively. In the same experimental conditions, 1a is totally inert. A common mechanism, proceeding through the preassociation of the incoming ligand followed by the P---H bond formation between one of the bridging P atoms and the hydride ligand, has been suggested for these reactions.     

The intrinsically disordered linker of E. coli SSB is critical for the release from single‐stranded DNA

The Escherichia coli single stranded DNA binding protein (SSB) is crucial for DNA replication, recombination and repair. Within each process, it has two seemingly disparate roles: it stabilizes single‐stranded DNA (ssDNA) intermediates generated during DNA processing and, forms complexes with a group of proteins known as the SSB‐interactome. Key to both roles is the C‐terminal, one‐third of the protein, in particular the intrinsically disordered linker (IDL). Previously, they have shown using a series of linker deletion mutants that the IDL links both ssDNA and target protein binding by mediating interactions with the oligosaccharide/oligonucleotide binding fold in the target. In this study, they examine the role of the linker region in SSB function in a variety of DNA metabolic processes in vitro. Using the same linker mutants, the results show that in addition to association reactions (either DNA or protein), the IDL is critical for the release of SSB from DNA. This release can be under conditions of ssDNA competition or active displacement by a DNA helicase or recombinase. Consistent with their previous work these results indicate that SSB linker mutants are defective for SSB–SSB interactions, and when the IDL is removed a terminal SSB–DNA complex results. Formation of this complex inhibits downstream processing of DNA by helicases such as RecG or PriA as well as recombination, mediated by RecA. A model, based on the evidence herein, is presented to explain how the IDL acts in SSB function.     

Analysis of the reproductive cycle of female wild marble trout <Emphasis Type="Italic">Salmo marmoratus</Emphasis> in a prealpine brook of the Soča River basin (Northeast Italy)

The reproductive cycle of female wild marble trout Salmo marmoratus was studied in a prealpine watercourse (Northeast Italy). Gonadosomatic index, oocyte growth and plasma levels of 17β-oestradiol and testosterone were bimonthly measured during one year to obtain a detailed dataset and to gain useful tools for the identification of the reproductive stage without impact for the species. Monitored features showed significant variations during the study period: gonadosomatic index and oocyte size increased slightly but significantly during the first part of the cycle (from February to June), while steroid levels remained quite constant; for all parameters, major increases were highlighted between August and the spawning season (which occurred from the middle of November to the middle of December). Ranges and trends observed for gonadosomatic index (from 0.87 ± 0.41% to 10.91 ± 3.37%) and oocyte diameter (from 0.692 ± 0.031 mm to 4.624 ± 0.208 mm) were generally in agreement with literature regarding salmonids, while plasma levels of 17β-oestradiol (from 0.214 ± 0.015 ng ml^?1 to 78.090 ± 23.882 ng ml^?1) and testosterone (from 0.327 ± 0.086 ng ml^?1 to 71.800 ± 29.406 ng ml^?1) showed wider ranges. A strong non-linear relationship was found between oocyte size and 17β-oestradiol plasma concentration (r ² = 0.890) and especially between oocyte size and testosterone plasma concentration (r ² = 0.947). This last relationship could likely be used to obtain information relative to the gonadal development, especially in the case of an endangered species like Salmo marmoratus, which needs non-invasive tools for management.     

Biodeterioration of ornamental marble statues in the Boboli Gardens (Florence, Italy)

The colonisation of ornamental marble statues in theBoboli Gardens of Florence (Italy) by photosyntheticmicro-organisms was investigated. The greenmicroalga Coccomyxa was the first colonizer ofnewly restored marble surfaces, appearing one yearafter the periodic cleaning and restoration of thestatues. Two years after restoration this alga gaverise to very thin green biofilms, with densitiesreaching about 3 × 10² cells cm^-2. Later,the biofilms were enriched by cyanobacterial forms,which became dominant. In about six years, aphotosynthetic microbial community, amounting to about3 × 10⁴ cells cm^-2, and structurally similarto that occurring on the unrestored statues wasdeveloped. This epilithic community showed amarked biodiversity; the main representative formsincluded Chroococcidiopsis, Leptolyngbya,Pleurocapsa, Coccomyxa and Apatococcus.Coccomyxa initiated the colonisation of themarble surfaces, favoured in this process by itsfacultative oligotrophic capacity and high cellsurface hydrophobicity, combined with tolerance ofhigh light intensity. The other investigated isolatedstrains did not show this set of features. Thesecretion of polysaccharidic substances and cellsurface hydrophobicity enhancing the capacity toadhere, favoured permanent colonisation of thecyanobacterial population. Indeed, the majority of thecyanobacterial strains (90%), were shown to besurrounded by exopolysaccharidic envelops, whichcontributed to the formation of stable microbialbiofilms, and possessed variable cell surfacehydrophobicity.