Revision of the late Visean-Serpukhovian (Mississippian) calcareous algae, foraminifers and microproblematica from Balia-Maden (NW Turkey)

The taxonomic revision of the carbonate microbiota of the limestone lenses intercalated into the Carboniferous siliciclastic series of Balia-Maden (Turkey) shows that most lenses are early or middle Brigantian in age (latest Visean), only a single lens being of younger age (late Serpukhovian). Calcareous microbiota are abundant in the Balia-Maden lenses carbonates. Microfacies analysis shows the dominance of shallow water environments. The Brigantian assemblage is accurately illustrated. The new foraminiferal taxon Cribrospira baliamadeni nov. sp. is morphologically similar to type-material of Cribrospira panderi von Möller, but has a porous wall with wider pores, almost keriothecal. C. baliamadeni nov. sp. corresponds to the misinterpreted Bradyina and Janischewskina of the previous literature on Balia-Maden lenses. These limestones show a great diversity of algosponges (carbonate microproblematica). Among them, (1) small, atypical Fasciella previously confused with Eosigmoilina; (2) an abundant form described for the first time, Frustulata reticulata nov. sp.; and (3) typical Falsocalcifolium punctatum (Maslov), important for the biostratigraphic implications, are also mentioned. The single Serpukhovian lens consists of a grainstone and contains the age-sensitive alga Archaeolithophyllum johnsoni Racz, and the foraminifers Monotaxinoides gracilis and Janischewskina sp.     

Phylogenetically poor plant communities receive more alien species, which more easily coexist with natives

Alien species can be a major threat to ecological communities, but we do not know why some community types allow the entry of many more alien species than do others. Here, for the first time, we suggest that evolutionary diversity inherent to the constituent species of a community may determine its present receptiveness to alien species. Using recent large databases from observational studies, we find robust evidence that assemblage of plant community types from few phylogenetic lineages (in plots without aliens) corresponds to higher receptiveness to aliens. Establishment of aliens in phylogenetically poor communities corresponds to increased phylogenetic dispersion of recipient communities and to coexistence with rather than replacement of natives. This coexistence between natives and distantly related aliens in recipient communities of low phylogenetic dispersion may reflect patterns of trait assembly. In communities without aliens, low phylogenetic dispersion corresponds to increased dispersion of most traits, and establishment of aliens corresponds to increased trait concentration. We conclude that if quantified across the tree of life, high biodiversity correlates with decreasing receptiveness to aliens. Low phylogenetic biodiversity, in contrast, facilitates coexistence between natives and aliens even if they share similar trait states.     

In vivo phage display: identification of organ-specific peptides using deep sequencing and differential profiling across tissues

In vivo phage display is widely used for identification of organ- or disease-specific homing peptides. However, the current in vivo phage biopanning approaches fail to assess biodistribution of specific peptide phages across tissues during the screen, thus necessitating laborious and time-consuming post-screening validation studies on individual peptide phages. Here, we adopted bioinformatics tools used for RNA sequencing for analysis of high-throughput sequencing (HTS) data to estimate the representation of individual peptides during biopanning in vivo. The data from in vivo phage screen were analyzed using differential binding—relative representation of each peptide in the target organ versus in a panel of control organs. Application of this approach in a model study using low-diversity peptide T7 phage library with spiked-in brain homing phage demonstrated brain-specific differential binding of brain homing phage and resulted in identification of novel lung- and brain-specific homing peptides. Our study provides a broadly applicable approach to streamline in vivo peptide phage biopanning and to increase its reproducibility and success rate.     

Ecological significance of leaf life span among Central European grass species

Interspecific variation in leaf life span reflects the variation in nutrient conservation ability among different plant species and is considered to be associated with nutrient availability in the characteristic habitat. As defoliation interferes with nutrient conservation by the long-lived leaves, we hypothesized that disturbance rate is another important environmental factor working as a selective force on interspecific variation in leaf life span. In order to investigate this, we measured leaf life span of 32 grass species in mature garden-grown individuals. Variation in leaf life span was compared to measured leaf traits, to available data on species occurrence along gradients of nutrient availability and disturbance, and to published relative growth rates of the species. Leaf life span was associated positively with leaf tissue mass density and negatively with specific leaf area. Leaf life span correlated negatively with the disturbance rate in the characteristic habitat of a species, but not with nutrient availability. The latter relationship did not come about due to the long leaf life spans of species from nutrient-rich habitats with a relatively low disturbance rate, and to some extent also due to the short leaf life spans of annual species from relatively nutrient-poor sites. We conclude that although leaf longevity is an important means of reducing nutrient losses, this is a selective advantage only if the plant is not subjected to frequent defoliation. The frequently postulated association between leaf life span of a species and nutrient availability in its characteristic habitat may occur among species of habitats with positively correlated nutrient availability and disturbance rate. Leaf life span is negatively associated with seedling RGR, but there may be deviations in this relationship due to species with contrasting characteristics at seedling stage and at maturity.     

Dark diversity in dry calcareous grasslands is determined by dispersal ability and stress‐tolerance

Temperate calcareous grasslands are characterized by high levels of species richness at small spatial scales. Nevertheless, many species from a habitat‐specific regional species pool may be absent from local communities and represent the ‘dark diversity’ of these sites. Here we investigate dry calcareous grasslands in northern Europe to determine what proportion of the habitat‐specific species pool is realized at small scales (i.e. how the community completeness varies) and which mechanisms may be contributing to the relative sizes of the observed and dark diversity. We test whether the absence of particular species in potentially suitable grassland sites is a consequence of dispersal limitation and/or a low ability to tolerate stress (e.g. drought and grazing). We analysed a total of 1223 vegetation plots (1 × 1 m) from dry calcareous grasslands in Sweden, Estonia and western Russia. The species co‐occurrence approach was used to estimate the dark diversity for each plot. We calculated the maximum dispersal distance for each of the 291 species in our dataset by using simple plant traits (dispersal syndrome, growth form and seed characteristics). Large seed size was used as proxy for small seed number; tall plant height and low S‐strategy type scores were used to characterise low stress‐tolerance. Levels of small‐scale community completeness were relatively low (more species were absent than present) and varied between the grasslands in different geographic areas. Species in the dark diversity were generally characterized by shorter dispersal distances and greater seed weight (fewer seeds) than species in the observed diversity. Species within the dark diversity were generally taller and had a lower tolerance of stressful conditions. We conclude that, even if temperate grasslands have high levels of small‐scale plant diversity, the majority of potentially suitable species in the regional species pool may be absent as a result of dispersal limitation and low stress‐tolerance.     

Harnessing the biodiversity value of Central and Eastern European farmland

A large proportion of European biodiversity today depends on habitat provided by low‐intensity farming practices, yet this resource is declining as European agriculture intensifies. Within the European Union, particularly the central and eastern new member states have retained relatively large areas of species‐rich farmland, but despite increased investment in nature conservation here in recent years, farmland biodiversity trends appear to be worsening. Although the high biodiversity value of Central and Eastern European farmland has long been reported, the amount of research in the international literature focused on farmland biodiversity in this region remains comparatively tiny, and measures within the EU Common Agricultural Policy are relatively poorly adapted to support it. In this opinion study, we argue that, 10 years after the accession of the first eastern EU new member states, the continued under‐representation of the low‐intensity farmland in Central and Eastern Europe in the international literature and EU policy is impeding the development of sound, evidence‐based conservation interventions. The biodiversity benefits for Europe of existing low‐intensity farmland, particularly in the central and eastern states, should be harnessed before they are lost. Instead of waiting for species‐rich farmland to further decline, targeted research and monitoring to create locally appropriate conservation strategies for these habitats is needed now.     

Cutting More from Cut Forests: Edge Effects on Foraging and Herbivory of Leaf-Cutting Ants in Brazil

Edge-mediated changes in species composition are known to result in modified species interactions. Because of the crucial trophic position of herbivores and their far-reaching impact on plant communities, it is important to understand how edge influences herbivory. In the present paper, we investigated whether and how leaf-cutting ant foraging is altered in the forest edge, as this habitat is characterized by an increased proportion of pioneer species. We assessed basic foraging data as well as the herbivory rate ( i.e. , the proportion of the leaf material harvested by a colony in relation to the available leaf area in the foraging area) of Atta cephalotes colonies at the edge versus interior sites of a large remnant of the Atlantic forest in Northeast Brazil. Our results indicated clear edge effects on leaf-cutting ants: equally sized A. cephalotes colonies located at the forest edge removed about twice as much leaf area from their foraging grounds than interior colonies (14.3 vs. 7.8%/col/yr). This greater colony-level impact within the forest edge zone was a consequence of markedly reduced foraging areas (0.9 vs. 2.3 ha/col/yr) and moderately lower leaf area index in this habitat, whereas harvest rates were the same. Our results suggest that forest edges induce increased leaf-cutting ant herbivory, probably via the release of resource limitation. Together with the increase of leaf-cutting ant populations along forest edges, this may amplify environmental changes induced by habitat fragmentation.     

The role of GDNF in patterning the excretory system

Mesenchymal-epithelial interactions are an important source of information for pattern formation during organogenesis. In the developing excretory system, one of the secreted mesenchymal factors thought to play a critical role in patterning the growth and branching of the epithelial ureteric bud is GDNF. We have tested the requirement for GDNF as a paracrine chemoattractive factor by altering its site of expression during excretory system development. Normally, GDNF is secreted by the metanephric mesenchyme and acts via receptors on the Wolffian duct and ureteric bud epithelium. Misexpression of GDNF in the Wolffian duct and ureteric buds resulted in formation of multiple, ectopic buds, which branched independently of the metanephric mesenchyme. This confirmed the ability of GDNF to induce ureter outgrowth and epithelial branching in vivo. However, in mutant mice lacking endogenous GDNF, kidney development was rescued to a substantial degree by GDNF supplied only by the Wolffian duct and ureteric bud. These results indicate that mesenchymal GDNF is not required as a chemoattractive factor to pattern the growth of the ureteric bud within the developing kidney, and that any positional information provided by the mesenchymal expression of GDNF may provide for renal branching morphogenesis is redundant with other signals.