Replication slippage may cause parallel evolution in the secondary structures of mitochondrial transfer RNAs

Presence of the dihydrouridine (D) stem in the mitochondrial cysteine tRNA is unusually variable among lepidosaurian reptiles. Phylogenetic and comparative analyses of cysteine tRNA gene sequences identify eight parallel losses of the D-stem, resulting in D-arm replacement loops. Sampling within the monophyletic Acrodonta provides no evidence for reversal. Slipped-strand mispairing of noncontiguous repeated sequences during replication or direct replication slippage can explain repeats observed within cysteine tRNAs that contain a D-arm replacement loop. These two mechanisms involving replication slippage can account for the loss of the cysteine tRNA D-stem in several lepidosaurian lineages, and may represent general mechanisms by which the secondary structures of mitochondrial tRNAs are altered.      

The Dark Side of Humanity: The Work of Robert Herte and Its Legacy

The Dark Side of Humanity: The Work of Robert Herte and Its Legacy, Robert Parkin. Amsterdam: Harwood Academic Publishers, 1996. 226 pp.     

Molecular characterisation of gibberellin 20-oxidases. Structure-function studies on recombinant enzymes and chimaeric proteins

Gibberellin (GA) 20-oxidases are multifunctional enzymes that catalyse reactions at an important branch point in the GA biosynthetic pathway. These enzymes oxidise the C-20 methyl group of a diterpene carboxylic acid precursor (e.g. GA₁₂) to form an alcohol (in our case GA₁₅-open lactone) and an aldehyde (GA₂₄). The aldehyde is either oxidised to a tricarboxylic acid (GA₂₅) or, with loss of carbon-20 and lactonisation, to a C₁₉-GA (GA₉). This branching is interesting to study, because C₁₉-GA derivatives function as plant hormones in different tissues, whereas the C₂₀-GA tricarboxylic acids have no known function. We have constructed chimaeric proteins by combining a GA 20-oxidase from immature seeds of Cucurbita maxima L., which produces mainly C-20 carboxylic acids, with a 20-oxidase from Marah macrocarpus immature seeds, which forms predominantly CC₁₉-GAs. The cDNAs encoding these two very similar 20-oxidases were digested with restriction endonucleases Van 911. Bcl 1, and Bsa WI, and six chimaeric sequences were produced by recombination of the DNA fragments. The pCM1 -construct was obtained by exchanging nt 303–809 of the Cucurbita cDNA with the homologous DNA from the March 20-oxidase. In pCM2, pCM3, pCM4, pCM5 and pCM6, nt 810–992, nt 993–end, nt 303–992, nt 810–end, and nt 311–end were exchanged, respectively. All constructs were cloned in a pUC18 vector and functionally expressed in E. coli NM522 cells. GA 20-oxidase activity was detectable in cell-lysates from the transformed E. coli, but the extent and kind of conversion depended on the construct. Highest conversion of GA₁₂was found with pCM1 and pCM3, one-tenth of this conversion was observed with pCM5 and pCM6, and one-hundredth was obtained with the hybrid proteins from pCM2 and pCM4. With pCM2 and pCM4, neither the C₁₉-end product, GA₉, nor the C₂₀-end product, GA₂₅-was formed. However, after transformation with constructs pCM1, pCM3, pCM5 or pCM6. GA₉accounted for 30, 40, 60 and 90%, respectively, of the end products formed. Thus, the segments originating from M. macrocarpus conferred upon the chimaeric proteins an increasing ability to direct the biosynthetic flow into C₁₉-GAs in this order. Although GA₂₄is the immediate precursor, much less end products were formed by using this substrate.     

Biomarkers of marine pollution observed in species of mullet living in two eastern Mediterranean harbours

The activities of enzymes associated with xenobiotic metabolism and or oxidative processes, and the levels of aromatic DNA adducts, have been determined in the livers of grey mullet Oedalechilus labeo and Lisa ramada living in two eastern Mediterranean harbours. Glutathione peroxidase GSH P activity was 2.5 times higher 9 IU g-1 liver and glutathione reductase GSSG R activity was twice as high 2.5 IU g-1 liver in fish from the more polluted harbour at Mersin than in the harbour near Erdemli. Superoxide dismutase SOD activity was 25 lower 4.3 IU g-1 liver in the more polluted harbour. The concentrations of glutathione and malondialdehyde varied both with species and environment by a factor of 2.5-3. DNA adducts in liver were determined by 32P postlabelling. In Oedalechilus labeo in the more polluted harbour, adduct levels were 258 21 adducts per 108 nucleotides mean SE ; two groups of Lisa ramada were distinguished having 261 48 and 30 6 adducts per 108 nucleotides, respectively. The average adduct level in a group of mullet of mixed species in the less polluted harbour was 3.3 2.3 adducts per 108 nucleotides. The results illuminate the ability of mullet to live in contaminated marine environments, and show that enzyme activities and liver DNA adduct levels can serve as indicators of marine pollution.     

Effects of aerial spray volume, coverage, and abamectin on Scirtothrips perseae (Thysanoptera: Thripidae).

Helicopter applications using abamectin in different spray volumes were made against Scirtothrips perseae Nakahara in Ventura County, CA. On small (2.2 m tall) trees, spray coverage on water-sensitive papers was 24-48% and 43-97% for 468 and 935 liter/ha volume treatments, respectively. On large (6.2-8.1 m tall) trees, spray coverage was lower and quite variable, from 1 to 28% and 10 to 70% for 468 and 935 liter/ha treatments, respectively. On small trees, 468, 701, and 935 liter/ha with a high abamectin rate (26 g [AI]/ha) were equally effective against larvae from 13 to 27 d after treatment (DAT). On medium (4.2 m tall) trees, 468 and 935 liter/ha with the high rate were equally effective from 23 to 113 DAT. On large (6.5-8.1 m tall) trees, 468 and 935 liter/ha with a low abamectin rate (13 g [AI]/ha) were ineffective in three tests. In a fourth large (6.8 m tall) tree test, 468 and 935 liter/ha with the high rate were effective at 3 and 37 DAT. In a fifth large (6.2 m tall) tree test, 468-1,403 liter/ha with the high and 935 liter/ha with the low rate were equally effective 2-22 DAT. After all effective treatments, thrips numbers were lower than in controls for 1-3 mo. However, stable and highest reductions in populations were sometimes delayed until 20-23 DAT even when coverage was high. The variability in spray coverage on the lower levels of large trees and the delayed effect may explain inconsistencies in the reporting of or in actual aerial application results.     

El Nuevo Mundo: The Landscape of Latino Los Angeles

El Nuevo Mundo: The Landscape of Latino Los Angeles. Photographs by Camilo José Vergara. National Building Museum, Washington, D.C., December 3, 1998-March 19, 1999; Cooper-Hewitt National Design Museum, New York City, June 25-September 5, 1999; Natural History Museum of Los Angeles County, Los Angeles, January 29–July 16, 2000 (review venue); Graham Foundation, Chicago, November 15,2000–January 25,2001.
ElNuevo Mundo: The Landscape of Latino Los Angeles. Photographs by Camilo José Vergara. Gustavo Leclerc. Michael J. Dear. and J. Dallas Dishman. eds. Los Angeles: Southern California Studies Center, 2000.48 pp.     

KINETICS OF NITRATE,AMMONIUM, AND UREA UPTAKE BY FOUR INTERTIDAL SEAWEEDS FROM NEW ZEALAND1

The competitive ability for N uptake by four intertidal seaweeds, Stictosiphonia arbuscula (Harvey) King et Puttock, Apophlaea lyallii Hook. f. et Harvey, Scytothamnus australis Hook. f. et Harvey, and Xiphophora gladiata (Labillardière) Montagne ex Harvey, from New Zealand is described by the uptake kinetics for NO₃^?, NH₄⁺, and urea. This is the first study to report uptake kinetics for N uptake by a range of southern hemisphere intertidal seaweeds in relation to season and zonation. Species growing at the highest shore positions had higher NO₃^? and urea uptake at both high and low concentrations and had unsaturable NH₄⁺ uptake in both summer and winter. Although there was evidence of some feedback inhibition of V_max for NO₃^? uptake by Stictosiphonia arbuscula growing at the lower vertical limits of its range, rates were high compared with species growing lower on the shore. Our results highlight the superior competitive ability for N uptake of certain high intertidal seaweeds, and consistent with our previous findings we can conclude that intertidal seaweeds in southeast New Zealand are adapted to maximizing N acquisition in a potentially N‐limiting environment.     

Fractal fluctuations in human respiration.

The present study was designed to characterize respiratory fluctuations in awake, healthy adult humans under resting conditions. For this purpose, we recorded respiratory movements with a strain-gauge pneumograph in 20 subjects. We then used Allan factor, Fano factor, and dispersional analysis to test whether the fluctuations in the number of breaths, respiratory period, and breath amplitude were fractal (i.e., time-scale-invariant) or random in occurrence. Specifically, we measured the slopes of the power laws in the Allan factor, Fano factor, and dispersional analysis curves for original time series and compared these with the slopes of the curves for surrogates (randomized data sets). In addition, the Hurst exponent was calculated from the slope of the power law in the Allan factor curve to determine whether the long-range correlations among the fluctuations in breath number were positively or negatively correlated. The results can be summarized as follows. Fluctuations in all three parameters were fractal in nine subjects. There were four subjects in whom only the fluctuations in number of breaths and breath amplitude were fractal, three subjects in whom only the fluctuations in number of breaths were fractal, and two subjects in whom only fluctuations in breath number and respiratory period were fractal. Time-scale-invariant behavior was absent in the two remaining subjects. The results indicate that, in most cases, apparently random fluctuations in respiratory pattern are, in fact, correlated over more than one time scale. Moreover, the data suggest that fractal fluctuations in breath number, respiratory period, and breath amplitude are controlled by separate processes.