Shrimp Molecular Responses to Viral Pathogens

From almost negligible amounts in 1970, the quantity of cultivated shrimp (∼3 million metric tons in 2007) has risen to approach that of the capture fishery and it constitutes a vital source of export income for many countries. Despite this success, viral diseases along the way have caused billions of dollars of losses for shrimp farmers. Desire to reduce the losses to white spot syndrome virus in particular, has stimulated much research since 2000 on the shrimp response to viral pathogens at the molecular level. The objective of the work is to develop novel, practical methods for improved disease control. This review covers the background and limitations of the current work, baseline studies and studies on humoral responses, on binding between shrimp and viral structural proteins and on intracellular responses. It also includes discussion of several important phenomena (i.e., the quasi immune response, viral co-infections, viral sequences in the shrimp genome and persistent viral infections) for which little or no molecular information is currently available, but is much needed.     

Traits associated with naturalization in <Emphasis Type=Italic>Anolis</Emphasis> lizards: comparison of morphological,distributional, anthropogenic,and phylogenetic models

The worldwide spread of invasive species affects native biodiversity and causes economic loss, but also allows better understanding of historical biogeographic patterns. Prediction of likely invaders facilitates economic and conservation decisions and gives insight into characteristics that have allowed natural colonization over evolutionary time. However, it is not clear what types of characters best predict naturalization or even whether naturalization is predictable at all. Squamate reptiles have been understudied subjects for invasion biology. Lizards of the genus Anolis have been highly successful colonizers both recently and over evolutionary time. Nineteen of the approximately 350 described species of Anolis have established naturalized populations. We constructed models of naturalization using morphological, distributional, anthropogenic, and phylogenetic characters and compared these single character class models to each other and to a composite model incorporating all four classes. We show that (1) each class of variables significantly predicts invasion, (2) a composite model significantly outperforms each of the submodels, and (3) the final composite model displays extraordinary ability to objectively identify naturalized species of Anolis.     

Light intensity is a limiting factor to the inland expansion of Cape ivy (<Emphasis Type=Italic>Delairea odorata</Emphasis>)

Cape ivy (Delairea odorata) is a highly invasive climbing perennial vine that is primarily distributed in coastal communities of California and Oregon, with patchy infestations in some inland riparian areas. In this study, we evaluated light as a potential environmental limitation to the spread of Cape ivy into inland regions of the western United States. Cape ivy was collected from four locations representing the north to south range. Plants were grown for 9 to 11 weeks in full sunlight and under two shade regimes (20 and 6% of full sunlight). The experiment was conducted twice at two temperature regimes. Results show some within- and among-population variability, with the southernmost San Diego County population having the highest biomass under the warmer growing conditions and the three northern populations responding most favorably in the cooler growing conditions. Despite the minor differences within and between populations, Cape ivy grew very poorly in full sunlight in both experiments. Although plants growing under 6% light grew better than those in full sunlight, they were far less robust compared to plants growing at 20% light. Our results indicate that while Cape ivy will not persist in areas with prolonged high intensity sunlight, characterized by much of the interior regions of California and Oregon, it is expected to invade and spread in areas with reduced light, including coastal regions frequently exposed to fog or cloudy conditions, or sub-canopy layers of riparian forests or woodlands. These communities should be the target areas for early detection and rapid response programs to prevent further Cape ivy invasion.     

Aspect-oriented development of cluster computing software

In complex software systems, modularity and readability tend to be degraded owing to inseparable interactions between concerns that are distinct features in a program. Such interactions result in tangled code that is hard to develop and maintain. Aspect-Oriented Programming (AOP) is a powerful method for modularizing source code and for decoupling cross-cutting concerns. A decade of growing research on AOP has brought the paradigm into many exciting areas. However, pioneering work on AOP has not flourished enough to enrich the design of distributed systems using the refined AOP paradigm. This article investigates three case studies that cover time-honored issues such as fault-tolerant computing, network heterogeneity, and object replication in the cluster computing community using the AOP paradigm. The aspects that we define here are simple, intuitive, and reusable. Our intensive experiences show that (i) AOP can improve the modularity of cluster computing software by separating the source code into base and instrumented parts, and (ii) AOP helps developers to deploy additional features to legacy cluster computing software without harming code modularity and system performance.     

Stochastic dynamics of leukemic cells under an intermittent targeted therapy

The evolutionary dynamics of cancerous cell populations in a model of Chronic Myeloid Leukemia (CML) is investigated in the presence of an intermittent targeted therapy. Cancer development and progression is modeled by simulating the stochastic evolution of initially healthy cells which can experience genetic mutations and modify their reproductive behavior, becoming leukemic clones. Front line therapy for the treatment of patients affected by CML is based on the administration of tyrosine kinase inhibitors, namely imatinib (Gleevec) or, more recently, dasatinib or nilotinib. Despite the fact that they represent the first example of a successful molecular targeted therapy, the development of resistance to these drugs is observed in a proportion of patients, especially those in advanced stages. In this study, we simulate an imatinib-like treatment of CML by modifying the fitness and the death rate of cancerous cells and describe the several scenarios in the evolutionary dynamics of white blood cells as a consequence of the efficacy of the different modeled therapies. The patient response to the therapy is investigated by simulating a drug administration following a continuous or pulsed time scheduling. A permanent disappearance of leukemic clones is achieved with a continuous therapy. This theoretical behavior is in a good agreement with that observed in previous clinical investigations. However, these findings demonstrate that an intermittent therapy could represent a valid alternative in patients with high risk of toxicity. A suitable tuned pulsed therapy can also reduce the probability of developing resistance.     

Climate,Livestock, and Vegetation: What Drives Fire Increase in the Arid Ecosystems of Southern Russia?

Fire is an important natural disturbance process in arid grasslands but current fire regimes are largely the result of both human and natural processes and their interactions. The collapse of the Soviet Union in 1991 spurred substantial socioeconomic changes and was ultimately followed by a rapid increase in burned area in southern Russia. What is unclear is whether this increase in burned area was caused by decreasing livestock numbers, vegetation changes, climate change, or interactions of these factors. Our research goal was to identify the driving forces behind the increase in burned area in the arid grasslands of southern Russia. Our study area encompassed 19,000 km² in the Republic of Kalmykia in southern Russia. We analyzed annual burned area from 1986 to 2006 as a function of livestock population, NDVI, precipitation, temperature, and broad-scale oscillation indices using best subset regressions and structural equation modeling. Our results supported the hypothesis that vegetation recovered within 5–6 years after the livestock declined in the beginning of the 1990s, to a point at which large fires could be sustained. Climate was an important explanatory factor for burning, but mainly after 1996 when lower livestock numbers allowed fuels to accumulate. Ultimately, our results highlight the complexity of coupled human-natural systems, and provide an example of how abrupt socioeconomic change may affect fire regimes.     

The impact of acquired brain damage in terms of epidemiology,economics and loss in quality of life

Background  

Patients with acquired brain damage (ABD) have suffered a brain lesion that interrupts vital development in the physical, psychological and social spheres. Stroke and traumatic brain injury (TBI) are the two main causes. The objectives of this study were to estimate the incidence and prevalence of ABD in the population of the Basque Country and Navarre in 2008, to calculate the associated cost of the care required and finally to assess the loss in health-related quality of life.