On the possibility of identifying human subjects using behavioural complexity analyses

Background: Identification of human subjects using a geometric approach to complexity analysis of behavioural data is designed to provide a basis for a more precise diagnosis leading towards personalised medicine. Methods: The approach is based on capturing behavioural time-series that can be characterized by a fractional dimension using non-invasive longer-time acquisitions of heart rate, perfusion, blood oxygenation, skin temperature, relative movement and steps frequency. The geometry based approach consists in the analysis of the area and centroid of convex hulls encapsulating the behavioural data represented in Euclidian index spaces based on the scaling properties of the self-similar normally distributed behavioural time-series of the above mentioned quantities. Results: An example demonstrating the presented approach of behavioural fingerprinting is provided using sensory data of eight healthy human subjects based on approximately fifteen hours of data acquisition. Our results show that healthy subjects can be factorized to different similarity groups based on a particular choice of a convex hull in the corresponding Euclidian space. One of the results indicates that healthy subjects share only a small part of the convex hull pertaining to a highly trained individual from the geometric comparison point of view. Similarly, the presented pair-wise individual geometric similarity measure indicates large differences among the subjects suggesting the possibility of neuro-fingerprinting. Conclusions: Recently introduced multi-channel body-attached sensors provide a possibility to acquire behavioural time-series that can be mathematically analysed to obtain various objective measures of behavioural patterns yielding behavioural diagnoses favouring personalised treatments of, e.g., neuropathologies or aging.     

Macroinvertebrates of flooded trees in the man-made Volta Lake (Ghana) with special reference to the burrowing Mayfly Povilla adusta Navas

Summary The species composition of periphytic macroinvertebrates on and in flooded trees differs at different localities on the Volta Lake. The main differences concern chironomid and trichopteran larvae. The reasons for this lie in the different exposure of trees to wave action, in the availability of soft wood and bark as a substrate, and in the distance of trees off-shore. All these factors determine the intensity of growth of the periphytic algae. The growth of the periphytic fauna will also be influenced by the density of phytoplankton on which it feeds. Other factors, such as oxygen concentration and the turbidity of the water, are also likely to affect the productivity of the whole community.The abundance of Povilla nymphs, the most common organism in trees, seems to depend on the type of the substrate. The bark of trees is exploited more than the wood, and trees with harder wood are less attacked than those with soft wood. Macroscopically, the male nymphs can be distinguished from female nymphs from a length of 6.0 mm, and they start to emerge when 9.0 mm long. Females emerge from 14.0 mm length. Nymphs tend to be heavier in dense populations. The difference in the weight of nymphs may be due to differences in availability of food.Nymphs of Povilla were found to feed both on solitary and attached periphytic algae, together with detritus and planktonic algae. Because of the great abundance of Povilla the nymphs of this species are of great importance in the conversion of algae into animal protein, being themselves heavily exploited by fish.No lunar periodicity, such as occurs on Lake Victoria, was found, and Povilla in the Volta Lake seems to emerge continuously.     

Whole cell cryo-electron tomography reveals distinct disassembly intermediates of vaccinia virus

At each round of infection, viruses fall apart to release their genome for replication, and then reassemble into stable particles within the same host cell. For most viruses, the structural details that underlie these disassembly and assembly reactions are poorly understood. Cryo-electron tomography (cryo-ET), a unique method to investigate large and asymmetric structures at the near molecular resolution, was previously used to study the complex structure of vaccinia virus (VV). Here we study the disassembly of VV by cryo-ET on intact, rapidly frozen, mammalian cells, infected for up to 60 minutes. Binding to the cell surface induced distinct structural rearrangements of the core, such as a shape change, the rearrangement of its surface spikes and de-condensation of the viral DNA. We propose that the cell surface induced changes, in particular the decondensation of the viral genome, are a prerequisite for the subsequent release of the vaccinia DNA into the cytoplasm, which is followed by its cytoplasmic replication. Generally, this is the first study that employs whole cell cryo-ET to address structural details of pathogen-host cell interaction.     

Dialects of an invasive songbird are preserved in its invaded but not native source range

Biological invasions are not only events with substantial environmental and socioeconomic impacts but are also interesting natural experiments, allowing the study of phenomena such as the cultural evolution of bird song following introduction. We took an excellent opportunity to compare the distribution of dialects of the yellowhammer Emberiza citrinella, a small Eurasian passerine, in its native source region (Great Britain) and invaded range (New Zealand) more than hundred years after relocation. Recent field recordings (including those provided by volunteers within a citizen science project) were complemented by those from archives, each assigned to appropriate dialect by visual inspection of a sonogram, and the resulting spatial patterns of dialect distribution were interpreted using historical data on the yellowhammer invasion. The two countries differ markedly in the composition and distribution of dialects. New Zealand populations sing a greater number of different dialects, seven in total, five of which were not detected in the current British population, but have been reported by previous studies from the continental Europe. Two identified localities of capture (Brighton, Sussex, UK) and release (Dunedin, Otago, NZ) differ even more strikingly, having no dialects in common. The largely sedentary nature of yellowhammers allows for two mutually exclusive explanations for European dialects being detected in New Zealand but not in Great Britain: 1) the corresponding song types have emerged de novo in New Zealand, through convergent cultural evolution; 2) the dialects have disappeared from Great Britain, while being preserved in New Zealand. Indirect evidence from the widespread occurrence of these dialects in continental Europe and the reported stability of yellowhammer song, supports the latter explanation. We suggest that the yellowhammer dialect system is an avian equivalent of a phenomenon already noted in human languages, in which ancient words or structures are retained in expatriate communities.     

Multiple stressors on biotic interactions: how climate change and alien species interact to affect pollination

Global change may substantially affect biodiversity and ecosystem functioning but little is known about its effects on essential biotic interactions. Since different environmental drivers rarely act in isolation it is important to consider interactive effects. Here, we focus on how two key drivers of anthropogenic environmental change, climate change and the introduction of alien species, affect plant–pollinator interactions. Based on a literature survey we identify climatically sensitive aspects of species interactions, assess potential effects of climate change on these mechanisms, and derive hypotheses that may form the basis of future research. We find that both climate change and alien species will ultimately lead to the creation of novel communities. In these communities certain interactions may no longer occur while there will also be potential for the emergence of new relationships. Alien species can both partly compensate for the often negative effects of climate change but also amplify them in some cases. Since potential positive effects are often restricted to generalist interactions among species, climate change and alien species in combination can result in significant threats to more specialist interactions involving native species.     

An outbreak of philophthalmosis in Larus michahellis and Larus fuscus gulls in Iberian Peninsula

Trematodes of the genus Philophthalmus Loos, 1899 are the eye parasites of birds and mammals, which use freshwater snails as their first intermediate hosts. Here we examined the presence of philophthalmids in a total of 1515 gulls (589 Larus fuscus and 926 Larus michahellis) admitted between January 2010 and October 2016 for rehabilitation at Olhão (Portugal), by the use of combined morphological and molecular analysis. We recorded the first infected L. fuscus and L. michahellis in July and November 2015, respectively. The philophthalmids were located in the conjunctival sac or under the nictitating membrane. Gulls infected with Philophthalmus lucipetus Rudolphi, 1819 presented no clinical signs, while those infected with Philophthalmus lacrymosus Braun, 1902 presented serious eye damage in the same host species. The prevalence of P. lucipetus reached 3.6% in L. fuscus and 0.8% in L. michahellis; the prevalence of P. lacrymosus reached 0.3% and 0.0%, respectively. The outbreak of P. lucipetus likely started in a narrowly defined area, since the first six cases, found between July and October 2015, originated from a single municipality, and only later more cases started to be retrieved from other municipalities of Portugal. These findings represent the first records of both philophthalmids in the Iberian Peninsula, their first records in L. michahellis and the first record of P. lacrymosus in L. fuscus. Further follow-up of the outbreak and the identification of intermediate hosts are needed.     

Primary structure of apolipophorin-III from the greater wax moth,Galleria mellonella

The complete amino acid sequence of apolipophorin-III (apoLp-III), a lipid-binding hemolymph protein from the greater wax moth,Galleria mellonella, was determined by protein sequencing. The mature protein consists of 163 amino acid residues forming a protein of 18,075.5 Da. Its sequence is similar to apoLp-III from other Lepidopteran species, but remarkably different from the apoLp-IIIs of insects from other orders. As shown by mass spectrometric analysis, the protein carries no modifications. Thus, all of its known physiological functions, including its recently discovered immune response-stimulating activity, must reside in the protein itself.     

Transmembrane adaptor protein WBP1L regulates CXCR4 signalling and murine haematopoiesis

WW domain binding protein 1‐like (WBP1L), also known as outcome predictor of acute leukaemia 1 (OPAL1), is a transmembrane adaptor protein, expression of which correlates with ETV6‐RUNX1 (t(12;21)(p13;q22)) translocation and favourable prognosis in childhood leukaemia. It has a broad expression pattern in haematopoietic and in non‐haematopoietic cells. However, its physiological function has been unknown. Here, we show that WBP1L negatively regulates signalling through a critical chemokine receptor CXCR4 in multiple leucocyte subsets and cell lines. We also show that WBP1L interacts with NEDD4‐family ubiquitin ligases and regulates CXCR4 ubiquitination and expression. Moreover, analysis of Wbp1l‐deficient mice revealed alterations in B cell development and enhanced efficiency of bone marrow cell transplantation. Collectively, our data show that WBP1L is a novel regulator of CXCR4 signalling and haematopoiesis.     

Phenology and polyploidy in annual Brachypodium species (Poaceae) along the aridity gradient in Israel

Local adaptation of plants along environmental gradients provides strong evidence for clinal evolution mediated by natural selection. Plants have developed diverse strategies to mitigate stress, for example, drought escape is a phenological strategy to avoid drought stress, while polyploidy was proposed as a genomic adaptation to stress. Polyploidy as an adaptation to aridity (an environmental parameter integrating temperature and precipitation) was previously documented in annual Brachypodium spp. (Poaceae) in the Western Mediterranean. Here, we examined whether polyploidy or phenology are associated with aridity in annual Brachypodium spp. along the aridity gradient in the Eastern Mediterranean. Using flow cytometry, we determined ploidy levels of plants from natural populations along the Israeli gradient, spanning ∼424 km from mesic Mediterranean to extreme desert climates. In a common garden we recorded time of seedling emergence, flowering and senescence. We tested whether the proportion of allotetraploids in the populations and phenological traits were associated with aridity. Contrary to a previous study in the Western Mediterranean, we found no effect of aridity on the proportion of allotetraploids and diploids within populations. Interestingly, phenology was associated with aridity: time of emergence was later, while flowering and senescence were earlier in desert plants. Our results indicate that in the Eastern Mediterranean, adaptation of Brachypodium to aridity is mediated mainly by phenology, rather than ploidy level. Therefore, we suggest that genome duplication is not the main driver of adaptation to environmental stress; rather, phenological change as a drought escape mechanism may be the major adaptation.